data_6PFL
#
_model_server_result.job_id            rTgESukI_VbbNk0fJbkORQ 
_model_server_result.datetime_utc      '2024-11-22 10:15:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pfl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1801}' 
#
_entry.id    6PFL 
#
_exptl.entry_id    6PFL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              559.316 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENOSINE-5-DIPHOSPHORIBOSE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6PFL 
_cell.length_a            50.423 
_cell.length_b            50.423 
_cell.length_c            128.412 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PFL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 42.804 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C15 H23 N5 O14 P2' 
_chem_comp.formula_weight    559.316 
_chem_comp.id                APR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENOSINE-5-DIPHOSPHORIBOSE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 APR sing 13 n y 
N1 C6 APR doub 14 n y 
C2 N3 APR doub 15 n y 
C2 H2 APR sing 16 n n 
N3 C4 APR sing 17 n y 
C4 C5 APR doub 18 n y 
C4 N9 APR sing 19 n y 
C5 C6 APR sing 20 n y 
C5 N7 APR sing 21 n y 
C6 N6 APR sing 22 n n 
N6 H61 APR sing 23 n n 
N6 H62 APR sing 24 n n 
N7 C8 APR doub 25 n y 
C8 N9 APR sing 26 n y 
C8 H8 APR sing 27 n n 
N9 C1' APR sing 28 n n 
C1' C2' APR sing 29 n n 
C1' O4' APR sing 30 n n 
C1' "H'1" APR sing 31 n n 
C2' O2' APR sing 32 n n 
C2' C3' APR sing 33 n n 
C2' "H'2" APR sing 34 n n 
O2' "HO'2" APR sing 35 n n 
C3' O3' APR sing 36 n n 
C3' C4' APR sing 37 n n 
C3' "H'3" APR sing 38 n n 
O3' "HO'3" APR sing 39 n n 
O4' C4' APR sing 40 n n 
C4' C5' APR sing 41 n n 
C4' "H'4" APR sing 42 n n 
C5' O5' APR sing 43 n n 
C5' "H5'1" APR sing 44 n n 
C5' "H5'2" APR sing 45 n n 
O5' PA APR sing 46 n n 
PA O1A APR doub 47 n n 
PA O2A APR sing 48 n n 
PA O3A APR sing 49 n n 
O2A HOA2 APR sing 50 n n 
O3A PB APR sing 51 n n 
PB O1B APR doub 52 n n 
PB O2B APR sing 53 n n 
PB O5D APR sing 54 n n 
O2B HOB2 APR sing 55 n n 
O5D C5D APR sing 56 n n 
C5D C4D APR sing 57 n n 
C5D H5R1 APR sing 58 n n 
C5D H5R2 APR sing 59 n n 
O4D C1D APR sing 60 n n 
O4D C4D APR sing 61 n n 
O1D C1D APR sing 62 n n 
O1D HOR1 APR sing 63 n n 
C1D C2D APR sing 64 n n 
C1D "HR'1" APR sing 65 n n 
O2D C2D APR sing 66 n n 
O2D HOR2 APR sing 67 n n 
C2D C3D APR sing 68 n n 
C2D "HR'2" APR sing 69 n n 
O3D C3D APR sing 70 n n 
O3D HOR3 APR sing 71 n n 
C3D C4D APR sing 72 n n 
C3D "HR'3" APR sing 73 n n 
C4D "HR'4" APR sing 74 n n 
#
_atom_sites.entry_id                     6PFL 
_atom_sites.fract_transf_matrix[1][1]    0.019832 
_atom_sites.fract_transf_matrix[1][2]    0.01145 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0229 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007787 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 APR A 1 1801 1701 APR APR . 
D 3 UNX A 1 1802 3 UNX UNX . 
E 2 APR B 1 1801 1701 APR APR . 
F 3 UNX B 1 1802 1 UNX UNX . 
G 3 UNX B 1 1803 2 UNX UNX . 
H 4 HOH A 1 1901 8 HOH HOH . 
H 4 HOH A 2 1902 11 HOH HOH . 
H 4 HOH A 3 1903 14 HOH HOH . 
H 4 HOH A 4 1904 4 HOH HOH . 
H 4 HOH A 5 1905 2 HOH HOH . 
H 4 HOH A 6 1906 1 HOH HOH . 
H 4 HOH A 7 1907 23 HOH HOH . 
H 4 HOH A 8 1908 22 HOH HOH . 
I 4 HOH B 1 1901 7 HOH HOH . 
I 4 HOH B 2 1902 3 HOH HOH . 
I 4 HOH B 3 1903 10 HOH HOH . 
I 4 HOH B 4 1904 13 HOH HOH . 
I 4 HOH B 5 1905 16 HOH HOH . 
I 4 HOH B 6 1906 20 HOH HOH . 
I 4 HOH B 7 1907 19 HOH HOH . 
I 4 HOH B 8 1908 9 HOH HOH . 
I 4 HOH B 9 1909 21 HOH HOH . 
I 4 HOH B 10 1910 24 HOH HOH . 
I 4 HOH B 11 1911 25 HOH HOH . 
I 4 HOH B 12 1912 17 HOH HOH . 
I 4 HOH B 13 1913 6 HOH HOH . 
I 4 HOH B 14 1914 18 HOH HOH . 
I 4 HOH B 15 1915 26 HOH HOH . 
I 4 HOH B 16 1916 5 HOH HOH . 
I 4 HOH B 17 1917 27 HOH HOH . 
I 4 HOH B 18 1918 12 HOH HOH . 
I 4 HOH B 19 1919 15 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 APR . . . E 2 0.131 -22.828 11.765 1 45.51 ? N1 APR 1801 B 1 
HETATM 2 C C2 APR . . . E 2 0.889 -23.933 11.786 1 43.27 ? C2 APR 1801 B 1 
HETATM 3 N N3 APR . . . E 2 0.731 -25.047 12.494 1 45.41 ? N3 APR 1801 B 1 
HETATM 4 C C4 APR . . . E 2 -0.354 -24.963 13.278 1 40.77 ? C4 APR 1801 B 1 
HETATM 5 C C5 APR . . . E 2 -1.218 -23.89 13.372 1 36.03 ? C5 APR 1801 B 1 
HETATM 6 C C6 APR . . . E 2 -0.953 -22.765 12.566 1 37.6 ? C6 APR 1801 B 1 
HETATM 7 N N6 APR . . . E 2 -1.687 -21.65 12.557 1 33.3 ? N6 APR 1801 B 1 
HETATM 8 N N7 APR . . . E 2 -2.217 -24.179 14.283 1 38.4 ? N7 APR 1801 B 1 
HETATM 9 C C8 APR . . . E 2 -1.924 -25.373 14.743 1 35.83 ? C8 APR 1801 B 1 
HETATM 10 N N9 APR . . . E 2 -0.809 -25.9 14.166 1 41.7 ? N9 APR 1801 B 1 
HETATM 11 C C1' APR . . . E 2 -0.224 -27.248 14.445 1 41.12 ? C1' APR 1801 B 1 
HETATM 12 C C2' APR . . . E 2 -0.05 -27.526 15.932 1 45.71 ? C2' APR 1801 B 1 
HETATM 13 O O2' APR . . . E 2 1.158 -27.024 16.442 1 48.52 ? O2' APR 1801 B 1 
HETATM 14 C C3' APR . . . E 2 -0.071 -29.056 15.961 1 50.3 ? C3' APR 1801 B 1 
HETATM 15 O O3' APR . . . E 2 1.241 -29.542 15.746 1 61.05 ? O3' APR 1801 B 1 
HETATM 16 O O4' APR . . . E 2 -1.127 -28.233 13.985 1 43.91 ? O4' APR 1801 B 1 
HETATM 17 C C4' APR . . . E 2 -1.023 -29.423 14.811 1 46.94 ? C4' APR 1801 B 1 
HETATM 18 C C5' APR . . . E 2 -2.406 -29.871 15.222 1 45.52 ? C5' APR 1801 B 1 
HETATM 19 O O5' APR . . . E 2 -2.996 -28.889 16.101 1 39.74 ? O5' APR 1801 B 1 
HETATM 20 P PA APR . . . E 2 -4.494 -28.449 15.827 1 39.66 ? PA APR 1801 B 1 
HETATM 21 O O1A APR . . . E 2 -4.677 -28.291 14.363 1 36.28 ? O1A APR 1801 B 1 
HETATM 22 O O2A APR . . . E 2 -4.874 -27.295 16.731 1 41.8 ? O2A APR 1801 B 1 
HETATM 23 O O3A APR . . . E 2 -5.339 -29.722 16.245 1 45.63 ? O3A APR 1801 B 1 
HETATM 24 P PB APR . . . E 2 -5.271 -31.076 17.096 1 54.92 ? PB APR 1801 B 1 
HETATM 25 O O1B APR . . . E 2 -4.552 -32.109 16.106 1 46.27 ? O1B APR 1801 B 1 
HETATM 26 O O2B APR . . . E 2 -4.437 -30.931 18.326 1 55.87 ? O2B APR 1801 B 1 
HETATM 27 O O5D APR . . . E 2 -6.709 -31.438 17.261 1 48.91 ? O5D APR 1801 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#