data_6PFZ # _model_server_result.job_id A21_sitEiVNtJWSCdI6nBg _model_server_result.datetime_utc '2025-04-28 05:02:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pfz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":902}' # _entry.id 6PFZ # _exptl.entry_id 6PFZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.894 _cell.angle_gamma 90 _cell.entry_id 6PFZ _cell.length_a 84.976 _cell.length_b 100.355 _cell.length_c 136.196 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PFZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,M,N,O,P 1 1 B,C,G,H,I,J,K,L,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 K N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 306 D ASP 306 1_555 O CA CA . C CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc2 A O THR 332 D THR 332 1_555 O CA CA . C CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc3 A OD1 ASP 427 D ASP 427 1_555 P CA CA . C CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc4 A O LEU 428 D LEU 428 1_555 P CA CA . C CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? metalc ? metalc5 B OD2 ASP 306 A ASP 306 1_555 I CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc6 B O THR 332 A THR 332 1_555 I CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc7 B OD1 ASP 427 A ASP 427 1_555 L CA CA . B CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc8 B O LEU 428 A LEU 428 1_555 L CA CA . B CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc9 I CA CA . A CA 903 1_555 C OD1 ASP 427 B ASP 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc10 I CA CA . A CA 903 1_555 C O LEU 428 B LEU 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc11 C OD1 ASP 306 B ASP 306 1_555 L CA CA . B CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.132 ? metalc ? metalc12 C OD2 ASP 306 B ASP 306 1_555 L CA CA . B CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc13 C O THR 332 B THR 332 1_555 L CA CA . B CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc14 D OD2 ASP 306 C ASP 306 1_555 P CA CA . C CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc15 D O THR 332 C THR 332 1_555 P CA CA . C CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc16 D OD1 ASP 427 C ASP 427 1_555 O CA CA . C CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc17 D O LEU 428 C LEU 428 1_555 O CA CA . C CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 6PFZ _atom_sites.fract_transf_matrix[1][1] 0.011768 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000389 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009965 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD D 1 901 901 FAD FAD . F 3 COA D 1 902 902 COA COA . G 2 FAD A 1 901 901 FAD FAD . H 3 COA A 1 902 902 COA COA . I 4 CA A 1 903 4 CA CA . J 2 FAD B 1 901 901 FAD FAD . K 3 COA B 1 902 902 COA COA . L 4 CA B 1 903 3 CA CA . M 2 FAD C 1 901 901 FAD FAD . N 3 COA C 1 902 902 COA COA . O 4 CA C 1 903 1 CA CA . P 4 CA C 1 904 2 CA CA . Q 5 HOH A 1 1001 12 HOH HOH . Q 5 HOH A 2 1002 14 HOH HOH . Q 5 HOH A 3 1003 13 HOH HOH . R 5 HOH B 1 1001 7 HOH HOH . R 5 HOH B 2 1002 9 HOH HOH . R 5 HOH B 3 1003 1 HOH HOH . R 5 HOH B 4 1004 6 HOH HOH . R 5 HOH B 5 1005 8 HOH HOH . R 5 HOH B 6 1006 3 HOH HOH . R 5 HOH B 7 1007 11 HOH HOH . R 5 HOH B 8 1008 10 HOH HOH . R 5 HOH B 9 1009 2 HOH HOH . R 5 HOH B 10 1010 4 HOH HOH . R 5 HOH B 11 1011 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . F 3 -10.814 26.246 187.034 1 65.74 ? N1A COA 902 D 1 HETATM 2 C C2A COA . . . F 3 -12.028 26.017 187.564 1 72.43 ? C2A COA 902 D 1 HETATM 3 N N3A COA . . . F 3 -12.903 25.13 187.04 1 58 ? N3A COA 902 D 1 HETATM 4 C C4A COA . . . F 3 -12.555 24.459 185.946 1 54.55 ? C4A COA 902 D 1 HETATM 5 C C5A COA . . . F 3 -11.255 24.677 185.361 1 40.39 ? C5A COA 902 D 1 HETATM 6 C C6A COA . . . F 3 -10.418 25.58 185.947 1 36.36 ? C6A COA 902 D 1 HETATM 7 N N6A COA . . . F 3 -9.125 25.751 185.323 1 37.36 ? N6A COA 902 D 1 HETATM 8 N N7A COA . . . F 3 -11.132 23.815 184.192 1 55.91 ? N7A COA 902 D 1 HETATM 9 C C8A COA . . . F 3 -12.303 23.148 184.127 1 77.37 ? C8A COA 902 D 1 HETATM 10 N N9A COA . . . F 3 -13.098 23.534 185.143 1 69.7 ? N9A COA 902 D 1 HETATM 11 C C1B COA . . . F 3 -14.407 23 185.313 1 60.78 ? C1B COA 902 D 1 HETATM 12 C C2B COA . . . F 3 -14.766 22.415 186.63 1 47.53 ? C2B COA 902 D 1 HETATM 13 O O2B COA . . . F 3 -14.127 21.151 186.932 1 50.69 ? O2B COA 902 D 1 HETATM 14 C C3B COA . . . F 3 -16.149 22.12 186.337 1 55.52 ? C3B COA 902 D 1 HETATM 15 O O3B COA . . . F 3 -16.147 21.121 185.325 1 54.68 ? O3B COA 902 D 1 HETATM 16 P P3B COA . . . F 3 -16.842 19.694 185.663 1 143.87 ? P3B COA 902 D 1 HETATM 17 O O7A COA . . . F 3 -15.866 18.592 185.667 1 65.66 ? O7A COA 902 D 1 HETATM 18 O O8A COA . . . F 3 -17.413 19.601 187.018 1 54.7 1 O8A COA 902 D 1 HETATM 19 O O9A COA . . . F 3 -17.847 19.384 184.623 1 54.92 ? O9A COA 902 D 1 HETATM 20 C C4B COA . . . F 3 -16.663 23.308 185.636 1 58.19 ? C4B COA 902 D 1 HETATM 21 O O4B COA . . . F 3 -15.467 24.049 185.101 1 57.57 ? O4B COA 902 D 1 HETATM 22 C C5B COA . . . F 3 -17.395 24.021 186.704 1 52.58 ? C5B COA 902 D 1 HETATM 23 O O5B COA . . . F 3 -17.763 25.319 186.369 1 51.48 ? O5B COA 902 D 1 HETATM 24 P P1A COA . . . F 3 -18.484 26.014 187.672 1 221.27 ? P1A COA 902 D 1 HETATM 25 O O1A COA . . . F 3 -17.523 26.002 188.776 1 68.38 1 O1A COA 902 D 1 HETATM 26 O O2A COA . . . F 3 -18.753 27.44 187.487 1 61.89 ? O2A COA 902 D 1 HETATM 27 O O3A COA . . . F 3 -19.851 25.144 188.025 1 64.4 ? O3A COA 902 D 1 HETATM 28 P P2A COA . . . F 3 -21.02 24.813 186.894 1 37.47 ? P2A COA 902 D 1 HETATM 29 O O4A COA . . . F 3 -21.037 23.38 186.59 1 52.29 1 O4A COA 902 D 1 HETATM 30 O O5A COA . . . F 3 -20.776 25.431 185.583 1 63.48 ? O5A COA 902 D 1 HETATM 31 O O6A COA . . . F 3 -22.449 25.255 187.581 1 60.35 ? O6A COA 902 D 1 HETATM 32 C CBP COA . . . F 3 -23.244 25.996 189.68 1 50.89 ? CBP COA 902 D 1 HETATM 33 C CCP COA . . . F 3 -22.534 24.883 188.926 1 53.56 ? CCP COA 902 D 1 HETATM 34 C CDP COA . . . F 3 -24.556 26.302 188.938 1 37.66 ? CDP COA 902 D 1 HETATM 35 C CEP COA . . . F 3 -22.328 27.233 189.744 1 34.81 ? CEP COA 902 D 1 HETATM 36 C CAP COA . . . F 3 -23.52 25.458 191.083 1 69.02 ? CAP COA 902 D 1 HETATM 37 O OAP COA . . . F 3 -22.3 25.214 191.754 1 71.46 ? OAP COA 902 D 1 HETATM 38 C C9P COA . . . F 3 -24.357 26.436 191.917 1 76.27 ? C9P COA 902 D 1 HETATM 39 O O9P COA . . . F 3 -25.557 26.504 191.83 1 69.17 ? O9P COA 902 D 1 HETATM 40 N N8P COA . . . F 3 -23.633 27.289 192.844 1 75.91 ? N8P COA 902 D 1 HETATM 41 C C7P COA . . . F 3 -24.41 28.194 193.661 1 70.33 ? C7P COA 902 D 1 HETATM 42 C C6P COA . . . F 3 -24.983 27.253 194.718 1 82.18 ? C6P COA 902 D 1 HETATM 43 C C5P COA . . . F 3 -23.953 27.165 195.842 1 89.21 ? C5P COA 902 D 1 HETATM 44 O O5P COA . . . F 3 -22.873 26.678 195.651 1 70.02 ? O5P COA 902 D 1 HETATM 45 N N4P COA . . . F 3 -24.371 27.699 197.136 1 96.1 ? N4P COA 902 D 1 HETATM 46 C C3P COA . . . F 3 -23.464 27.689 198.248 1 81.95 ? C3P COA 902 D 1 HETATM 47 C C2P COA . . . F 3 -23.1 29.148 198.526 1 75.8 ? C2P COA 902 D 1 HETATM 48 S S1P COA . . . F 3 -21.319 29.348 198.805 1 89.33 ? S1P COA 902 D 1 # _model_server_stats.io_time_ms 104 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #