data_6PFZ # _model_server_result.job_id aBhLtXa51YXhB8aR-t_4Fg _model_server_result.datetime_utc '2025-04-17 23:56:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pfz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":902}' # _entry.id 6PFZ # _exptl.entry_id 6PFZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.894 _cell.angle_gamma 90 _cell.entry_id 6PFZ _cell.length_a 84.976 _cell.length_b 100.355 _cell.length_c 136.196 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PFZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,M,N,O,P 1 1 B,C,G,H,I,J,K,L,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 K N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 306 D ASP 306 1_555 O CA CA . C CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc2 A O THR 332 D THR 332 1_555 O CA CA . C CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc3 A OD1 ASP 427 D ASP 427 1_555 P CA CA . C CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc4 A O LEU 428 D LEU 428 1_555 P CA CA . C CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? metalc ? metalc5 B OD2 ASP 306 A ASP 306 1_555 I CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc6 B O THR 332 A THR 332 1_555 I CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc7 B OD1 ASP 427 A ASP 427 1_555 L CA CA . B CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc8 B O LEU 428 A LEU 428 1_555 L CA CA . B CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc9 I CA CA . A CA 903 1_555 C OD1 ASP 427 B ASP 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc10 I CA CA . A CA 903 1_555 C O LEU 428 B LEU 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc11 C OD1 ASP 306 B ASP 306 1_555 L CA CA . B CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.132 ? metalc ? metalc12 C OD2 ASP 306 B ASP 306 1_555 L CA CA . B CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc13 C O THR 332 B THR 332 1_555 L CA CA . B CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc14 D OD2 ASP 306 C ASP 306 1_555 P CA CA . C CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc15 D O THR 332 C THR 332 1_555 P CA CA . C CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc16 D OD1 ASP 427 C ASP 427 1_555 O CA CA . C CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc17 D O LEU 428 C LEU 428 1_555 O CA CA . C CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 6PFZ _atom_sites.fract_transf_matrix[1][1] 0.011768 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000389 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009965 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD D 1 901 901 FAD FAD . F 3 COA D 1 902 902 COA COA . G 2 FAD A 1 901 901 FAD FAD . H 3 COA A 1 902 902 COA COA . I 4 CA A 1 903 4 CA CA . J 2 FAD B 1 901 901 FAD FAD . K 3 COA B 1 902 902 COA COA . L 4 CA B 1 903 3 CA CA . M 2 FAD C 1 901 901 FAD FAD . N 3 COA C 1 902 902 COA COA . O 4 CA C 1 903 1 CA CA . P 4 CA C 1 904 2 CA CA . Q 5 HOH A 1 1001 12 HOH HOH . Q 5 HOH A 2 1002 14 HOH HOH . Q 5 HOH A 3 1003 13 HOH HOH . R 5 HOH B 1 1001 7 HOH HOH . R 5 HOH B 2 1002 9 HOH HOH . R 5 HOH B 3 1003 1 HOH HOH . R 5 HOH B 4 1004 6 HOH HOH . R 5 HOH B 5 1005 8 HOH HOH . R 5 HOH B 6 1006 3 HOH HOH . R 5 HOH B 7 1007 11 HOH HOH . R 5 HOH B 8 1008 10 HOH HOH . R 5 HOH B 9 1009 2 HOH HOH . R 5 HOH B 10 1010 4 HOH HOH . R 5 HOH B 11 1011 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . H 3 29.62 0.341 156.034 1 62.38 ? N1A COA 902 A 1 HETATM 2 C C2A COA . . . H 3 28.445 0.644 155.451 1 52.38 ? C2A COA 902 A 1 HETATM 3 N N3A COA . . . H 3 27.671 1.663 155.864 1 35.92 ? N3A COA 902 A 1 HETATM 4 C C4A COA . . . H 3 28.09 2.408 156.882 1 33.16 ? C4A COA 902 A 1 HETATM 5 C C5A COA . . . H 3 29.363 2.122 157.544 1 31.4 ? C5A COA 902 A 1 HETATM 6 C C6A COA . . . H 3 30.094 1.051 157.065 1 39.05 ? C6A COA 902 A 1 HETATM 7 N N6A COA . . . H 3 31.354 0.738 157.711 1 32.95 ? N6A COA 902 A 1 HETATM 8 N N7A COA . . . H 3 29.564 3.112 158.623 1 33.86 ? N7A COA 902 A 1 HETATM 9 C C8A COA . . . H 3 28.448 3.9 158.545 1 47.27 ? C8A COA 902 A 1 HETATM 10 N N9A COA . . . H 3 27.625 3.469 157.551 1 46.11 ? N9A COA 902 A 1 HETATM 11 C C1B COA . . . H 3 26.368 4.088 157.227 1 53.33 ? C1B COA 902 A 1 HETATM 12 C C2B COA . . . H 3 25.83 4.001 155.828 1 43.95 ? C2B COA 902 A 1 HETATM 13 O O2B COA . . . H 3 26.589 4.615 154.751 1 38.96 ? O2B COA 902 A 1 HETATM 14 C C3B COA . . . H 3 24.613 4.765 156.049 1 48.39 ? C3B COA 902 A 1 HETATM 15 O O3B COA . . . H 3 24.97 6.129 156.37 1 45.76 ? O3B COA 902 A 1 HETATM 16 P P3B COA . . . H 3 23.725 7.126 156.072 1 48.68 ? P3B COA 902 A 1 HETATM 17 O O7A COA . . . H 3 24.18 8.465 155.658 1 37.67 ? O7A COA 902 A 1 HETATM 18 O O8A COA . . . H 3 22.881 6.663 154.948 1 50.11 1 O8A COA 902 A 1 HETATM 19 O O9A COA . . . H 3 22.852 7.282 157.248 1 51.46 ? O9A COA 902 A 1 HETATM 20 C C4B COA . . . H 3 24.034 4.158 157.266 1 49.4 ? C4B COA 902 A 1 HETATM 21 O O4B COA . . . H 3 25.186 3.519 158.004 1 59.8 ? O4B COA 902 A 1 HETATM 22 C C5B COA . . . H 3 23.002 3.183 156.821 1 37.96 ? C5B COA 902 A 1 HETATM 23 O O5B COA . . . H 3 23.446 1.884 156.479 1 43.62 ? O5B COA 902 A 1 HETATM 24 P P1A COA . . . H 3 22.473 0.901 155.526 1 81.16 ? P1A COA 902 A 1 HETATM 25 O O1A COA . . . H 3 23.272 0.425 154.383 1 62.47 1 O1A COA 902 A 1 HETATM 26 O O2A COA . . . H 3 22.111 -0.311 156.283 1 53.77 ? O2A COA 902 A 1 HETATM 27 O O3A COA . . . H 3 21.11 1.637 154.904 1 63.64 ? O3A COA 902 A 1 HETATM 28 P P2A COA . . . H 3 19.751 2.062 155.763 1 45.42 ? P2A COA 902 A 1 HETATM 29 O O4A COA . . . H 3 19.476 3.512 155.673 1 41.34 1 O4A COA 902 A 1 HETATM 30 O O5A COA . . . H 3 19.974 1.887 157.191 1 64.53 ? O5A COA 902 A 1 HETATM 31 O O6A COA . . . H 3 18.471 1.105 155.343 1 67.58 ? O6A COA 902 A 1 HETATM 32 C CBP COA . . . H 3 17.373 -0.351 153.737 1 79.93 ? CBP COA 902 A 1 HETATM 33 C CCP COA . . . H 3 18.055 1.008 154.007 1 79.8 ? CCP COA 902 A 1 HETATM 34 C CDP COA . . . H 3 16.444 -0.771 154.89 1 71.78 ? CDP COA 902 A 1 HETATM 35 C CEP COA . . . H 3 18.445 -1.477 153.609 1 66.54 ? CEP COA 902 A 1 HETATM 36 C CAP COA . . . H 3 16.481 -0.047 152.496 1 84.44 ? CAP COA 902 A 1 HETATM 37 O OAP COA . . . H 3 17.102 0.89 151.606 1 61.17 ? OAP COA 902 A 1 HETATM 38 C C9P COA . . . H 3 15.854 -1.277 151.769 1 84.21 ? C9P COA 902 A 1 HETATM 39 O O9P COA . . . H 3 14.69 -1.537 151.896 1 70.57 ? O9P COA 902 A 1 HETATM 40 N N8P COA . . . H 3 16.643 -2.148 150.905 1 86.43 ? N8P COA 902 A 1 HETATM 41 C C7P COA . . . H 3 15.981 -3.252 150.219 1 75.42 ? C7P COA 902 A 1 HETATM 42 C C6P COA . . . H 3 15.451 -2.599 148.933 1 77.38 ? C6P COA 902 A 1 HETATM 43 C C5P COA . . . H 3 16.626 -2.479 147.94 1 78.46 ? C5P COA 902 A 1 HETATM 44 O O5P COA . . . H 3 17.609 -1.803 148.106 1 66.27 ? O5P COA 902 A 1 HETATM 45 N N4P COA . . . H 3 16.463 -3.234 146.728 1 77.52 ? N4P COA 902 A 1 HETATM 46 C C3P COA . . . H 3 17.493 -3.279 145.736 1 63.96 ? C3P COA 902 A 1 HETATM 47 C C2P COA . . . H 3 17.583 -4.811 145.696 1 80.88 ? C2P COA 902 A 1 HETATM 48 S S1P COA . . . H 3 19.141 -5.512 145.111 1 91.74 ? S1P COA 902 A 1 # _model_server_stats.io_time_ms 216 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #