data_6PFZ # _model_server_result.job_id 4spdpbdMXik_nwUvmu-5uA _model_server_result.datetime_utc '2025-04-26 12:25:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pfz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":903}' # _entry.id 6PFZ # _exptl.entry_id 6PFZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.894 _cell.angle_gamma 90 _cell.entry_id 6PFZ _cell.length_a 84.976 _cell.length_b 100.355 _cell.length_c 136.196 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PFZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,M,N,O,P 1 1 B,C,G,H,I,J,K,L,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 L N N ? 4 O N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 306 D ASP 306 1_555 O CA CA . C CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc2 A O THR 332 D THR 332 1_555 O CA CA . C CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc3 A OD1 ASP 427 D ASP 427 1_555 P CA CA . C CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc4 A O LEU 428 D LEU 428 1_555 P CA CA . C CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? metalc ? metalc5 B OD2 ASP 306 A ASP 306 1_555 I CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc6 B O THR 332 A THR 332 1_555 I CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc7 B OD1 ASP 427 A ASP 427 1_555 L CA CA . B CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc8 B O LEU 428 A LEU 428 1_555 L CA CA . B CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc9 I CA CA . A CA 903 1_555 C OD1 ASP 427 B ASP 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc10 I CA CA . A CA 903 1_555 C O LEU 428 B LEU 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc11 C OD1 ASP 306 B ASP 306 1_555 L CA CA . B CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.132 ? metalc ? metalc12 C OD2 ASP 306 B ASP 306 1_555 L CA CA . B CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc13 C O THR 332 B THR 332 1_555 L CA CA . B CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc14 D OD2 ASP 306 C ASP 306 1_555 P CA CA . C CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc15 D O THR 332 C THR 332 1_555 P CA CA . C CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc16 D OD1 ASP 427 C ASP 427 1_555 O CA CA . C CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc17 D O LEU 428 C LEU 428 1_555 O CA CA . C CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6PFZ _atom_sites.fract_transf_matrix[1][1] 0.011768 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000389 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009965 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD D 1 901 901 FAD FAD . F 3 COA D 1 902 902 COA COA . G 2 FAD A 1 901 901 FAD FAD . H 3 COA A 1 902 902 COA COA . I 4 CA A 1 903 4 CA CA . J 2 FAD B 1 901 901 FAD FAD . K 3 COA B 1 902 902 COA COA . L 4 CA B 1 903 3 CA CA . M 2 FAD C 1 901 901 FAD FAD . N 3 COA C 1 902 902 COA COA . O 4 CA C 1 903 1 CA CA . P 4 CA C 1 904 2 CA CA . Q 5 HOH A 1 1001 12 HOH HOH . Q 5 HOH A 2 1002 14 HOH HOH . Q 5 HOH A 3 1003 13 HOH HOH . R 5 HOH B 1 1001 7 HOH HOH . R 5 HOH B 2 1002 9 HOH HOH . R 5 HOH B 3 1003 1 HOH HOH . R 5 HOH B 4 1004 6 HOH HOH . R 5 HOH B 5 1005 8 HOH HOH . R 5 HOH B 6 1006 3 HOH HOH . R 5 HOH B 7 1007 11 HOH HOH . R 5 HOH B 8 1008 10 HOH HOH . R 5 HOH B 9 1009 2 HOH HOH . R 5 HOH B 10 1010 4 HOH HOH . R 5 HOH B 11 1011 5 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id O _atom_site.label_entity_id 4 _atom_site.Cartn_x -17.528 _atom_site.Cartn_y 19.104 _atom_site.Cartn_z 204.573 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 62.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 903 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #