data_6PGS # _model_server_result.job_id 7MqP5x47PIy3jw3OHJJf_g _model_server_result.datetime_utc '2024-11-09 02:04:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pgs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 6PGS # _exptl.entry_id 6PGS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6PGS _cell.length_a 243.919 _cell.length_b 243.919 _cell.length_c 109.732 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PGS _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 BMA BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG D 1 NAG 3 n C NAG 2 C 2 NAG D 1 NAG 3 n C BMA 3 C 3 BMA D 1 BMA 3 n C BMA 4 C 4 BMA D 1 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 187 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 15 A ASN 15 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale2 A SG CYS 323 A CYS 323 1_555 E C1 PLM . A PLM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.628 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale5 C O3 BMA . C BMA 3 1_555 C C1 BMA . C BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 388 n n C1 O2 PLM doub 389 n n C1 C2 PLM sing 390 n n O1 H PLM sing 391 n n C2 C3 PLM sing 392 n n C2 H21 PLM sing 393 n n C2 H22 PLM sing 394 n n C3 C4 PLM sing 395 n n C3 H31 PLM sing 396 n n C3 H32 PLM sing 397 n n C4 C5 PLM sing 398 n n C4 H41 PLM sing 399 n n C4 H42 PLM sing 400 n n C5 C6 PLM sing 401 n n C5 H51 PLM sing 402 n n C5 H52 PLM sing 403 n n C6 C7 PLM sing 404 n n C6 H61 PLM sing 405 n n C6 H62 PLM sing 406 n n C7 C8 PLM sing 407 n n C7 H71 PLM sing 408 n n C7 H72 PLM sing 409 n n C8 C9 PLM sing 410 n n C8 H81 PLM sing 411 n n C8 H82 PLM sing 412 n n C9 CA PLM sing 413 n n C9 H91 PLM sing 414 n n C9 H92 PLM sing 415 n n CA CB PLM sing 416 n n CA HA1 PLM sing 417 n n CA HA2 PLM sing 418 n n CB CC PLM sing 419 n n CB HB1 PLM sing 420 n n CB HB2 PLM sing 421 n n CC CD PLM sing 422 n n CC HC1 PLM sing 423 n n CC HC2 PLM sing 424 n n CD CE PLM sing 425 n n CD HD1 PLM sing 426 n n CD HD2 PLM sing 427 n n CE CF PLM sing 428 n n CE HE1 PLM sing 429 n n CE HE2 PLM sing 430 n n CF CG PLM sing 431 n n CF HF1 PLM sing 432 n n CF HF2 PLM sing 433 n n CG HG1 PLM sing 434 n n CG HG2 PLM sing 435 n n CG HG3 PLM sing 436 n n # _atom_sites.entry_id 6PGS _atom_sites.fract_transf_matrix[1][1] 0.0041 _atom_sites.fract_transf_matrix[1][2] 0.002367 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004734 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 BOG A 1 401 1 BOG BOG . E 5 PLM A 1 402 1 PLM PLM . F 6 64Z A 1 403 1 64Z 64Z . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . E 5 25.702 14.433 55.856 1 117.7 ? C1 PLM 402 A 1 HETATM 2 O O2 PLM . . . E 5 25.584 13.893 56.904 1 142.7 ? O2 PLM 402 A 1 HETATM 3 C C2 PLM . . . E 5 25.3 15.903 55.766 1 116.64 ? C2 PLM 402 A 1 HETATM 4 C C3 PLM . . . E 5 25.283 16.572 57.139 1 111.18 ? C3 PLM 402 A 1 HETATM 5 C C4 PLM . . . E 5 24.164 17.602 57.27 1 106.17 ? C4 PLM 402 A 1 HETATM 6 C C5 PLM . . . E 5 24.364 18.519 58.474 1 94.85 ? C5 PLM 402 A 1 HETATM 7 C C6 PLM . . . E 5 23.472 19.755 58.406 1 90.43 ? C6 PLM 402 A 1 HETATM 8 C C7 PLM . . . E 5 24.185 21.004 58.915 1 79.25 ? C7 PLM 402 A 1 HETATM 9 C C8 PLM . . . E 5 23.373 22.273 58.673 1 85.71 ? C8 PLM 402 A 1 HETATM 10 C C9 PLM . . . E 5 24.274 23.488 58.47 1 86.28 ? C9 PLM 402 A 1 HETATM 11 C CA PLM . . . E 5 23.488 24.779 58.256 1 93.24 ? CA PLM 402 A 1 HETATM 12 C CB PLM . . . E 5 24.375 25.88 57.684 1 98.96 ? CB PLM 402 A 1 HETATM 13 C CC PLM . . . E 5 23.937 27.276 58.119 1 94.89 ? CC PLM 402 A 1 HETATM 14 C CD PLM . . . E 5 24.94 28.34 57.682 1 91.28 ? CD PLM 402 A 1 HETATM 15 C CE PLM . . . E 5 24.518 29.744 58.106 1 92.37 ? CE PLM 402 A 1 HETATM 16 C CF PLM . . . E 5 25.315 30.826 57.382 1 91.48 ? CF PLM 402 A 1 HETATM 17 C CG PLM . . . E 5 24.897 32.23 57.81 1 96.4 ? CG PLM 402 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 17 #