data_6PGZ # _model_server_result.job_id hSOUBYC1551Cr2iFx1ZRsw _model_server_result.datetime_utc '2024-11-13 06:18:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pgz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6PGZ # _exptl.entry_id 6PGZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 264.385 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.93 _cell.angle_gamma 90 _cell.entry_id 6PGZ _cell.length_a 51.941 _cell.length_b 53.328 _cell.length_c 58.607 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PGZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 75 A CYS 75 1_555 C S1 MTN . A MTN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? covale ? covale2 B SG CYS 75 B CYS 75 1_555 E S1 MTN . B MTN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? # _chem_comp.formula 'C10 H18 N O3 S2' _chem_comp.formula_weight 264.385 _chem_comp.id MTN _chem_comp.mon_nstd_flag . _chem_comp.name 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MTSL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 N1 MTN sing 237 n n N1 C1 MTN sing 238 n n N1 C5 MTN sing 239 n n C1 C2 MTN sing 240 n n C1 C8 MTN sing 241 n n C1 C9 MTN sing 242 n n C2 C3 MTN doub 243 n n C2 H2 MTN sing 244 n n C3 C4 MTN sing 245 n n C3 C5 MTN sing 246 n n C4 S1 MTN sing 247 n n C4 H41 MTN sing 248 n n C4 H42 MTN sing 249 n n C5 C6 MTN sing 250 n n C5 C7 MTN sing 251 n n C6 H61 MTN sing 252 n n C6 H62 MTN sing 253 n n C6 H63 MTN sing 254 n n C7 H71 MTN sing 255 n n C7 H72 MTN sing 256 n n C7 H73 MTN sing 257 n n C8 H81 MTN sing 258 n n C8 H82 MTN sing 259 n n C8 H83 MTN sing 260 n n C9 H91 MTN sing 261 n n C9 H92 MTN sing 262 n n C9 H93 MTN sing 263 n n S1 S2 MTN sing 264 n n S2 O2 MTN doub 265 n n S2 O3 MTN doub 266 n n S2 C12 MTN sing 267 n n C12 H4 MTN sing 268 n n C12 H1 MTN sing 269 n n C12 H3 MTN sing 270 n n # _atom_sites.entry_id 6PGZ _atom_sites.fract_transf_matrix[1][1] 0.019253 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004419 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018752 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017506 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MTN A 1 201 300 MTN MTN . D 3 CL A 1 202 305 CL CL . E 2 MTN B 1 300 300 MTN MTN . F 4 HOH A 1 301 27 HOH HOH . F 4 HOH A 2 302 13 HOH HOH . F 4 HOH A 3 303 46 HOH HOH . F 4 HOH A 4 304 37 HOH HOH . F 4 HOH A 5 305 48 HOH HOH . F 4 HOH A 6 306 25 HOH HOH . F 4 HOH A 7 307 41 HOH HOH . F 4 HOH A 8 308 54 HOH HOH . F 4 HOH A 9 309 9 HOH HOH . F 4 HOH A 10 310 3 HOH HOH . F 4 HOH A 11 311 70 HOH HOH . F 4 HOH A 12 312 38 HOH HOH . F 4 HOH A 13 313 71 HOH HOH . F 4 HOH A 14 314 58 HOH HOH . F 4 HOH A 15 315 30 HOH HOH . F 4 HOH A 16 316 14 HOH HOH . F 4 HOH A 17 317 4 HOH HOH . F 4 HOH A 18 318 33 HOH HOH . F 4 HOH A 19 319 44 HOH HOH . F 4 HOH A 20 320 56 HOH HOH . F 4 HOH A 21 321 6 HOH HOH . F 4 HOH A 22 322 40 HOH HOH . F 4 HOH A 23 323 19 HOH HOH . F 4 HOH A 24 324 69 HOH HOH . F 4 HOH A 25 325 62 HOH HOH . F 4 HOH A 26 326 64 HOH HOH . F 4 HOH A 27 327 42 HOH HOH . F 4 HOH A 28 328 32 HOH HOH . F 4 HOH A 29 329 68 HOH HOH . F 4 HOH A 30 330 43 HOH HOH . F 4 HOH A 31 331 59 HOH HOH . F 4 HOH A 32 332 76 HOH HOH . F 4 HOH A 33 333 65 HOH HOH . G 4 HOH B 1 401 50 HOH HOH . G 4 HOH B 2 402 34 HOH HOH . G 4 HOH B 3 403 17 HOH HOH . G 4 HOH B 4 404 67 HOH HOH . G 4 HOH B 5 405 20 HOH HOH . G 4 HOH B 6 406 15 HOH HOH . G 4 HOH B 7 407 18 HOH HOH . G 4 HOH B 8 408 57 HOH HOH . G 4 HOH B 9 409 10 HOH HOH . G 4 HOH B 10 410 22 HOH HOH . G 4 HOH B 11 411 78 HOH HOH . G 4 HOH B 12 412 39 HOH HOH . G 4 HOH B 13 413 35 HOH HOH . G 4 HOH B 14 414 36 HOH HOH . G 4 HOH B 15 415 7 HOH HOH . G 4 HOH B 16 416 5 HOH HOH . G 4 HOH B 17 417 11 HOH HOH . G 4 HOH B 18 418 51 HOH HOH . G 4 HOH B 19 419 21 HOH HOH . G 4 HOH B 20 420 23 HOH HOH . G 4 HOH B 21 421 47 HOH HOH . G 4 HOH B 22 422 2 HOH HOH . G 4 HOH B 23 423 61 HOH HOH . G 4 HOH B 24 424 24 HOH HOH . G 4 HOH B 25 425 29 HOH HOH . G 4 HOH B 26 426 60 HOH HOH . G 4 HOH B 27 427 28 HOH HOH . G 4 HOH B 28 428 66 HOH HOH . G 4 HOH B 29 429 74 HOH HOH . G 4 HOH B 30 430 75 HOH HOH . G 4 HOH B 31 431 77 HOH HOH . G 4 HOH B 32 432 45 HOH HOH . G 4 HOH B 33 433 49 HOH HOH . G 4 HOH B 34 434 63 HOH HOH . G 4 HOH B 35 435 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MTN . . . C 2 13.005 26.466 13.812 1 34.12 ? O1 MTN 201 A 1 HETATM 2 N N1 MTN . . . C 2 13.997 25.488 14.259 1 31.46 ? N1 MTN 201 A 1 HETATM 3 C C1 MTN . . . C 2 15.18 25.071 13.485 1 26.25 ? C1 MTN 201 A 1 HETATM 4 C C2 MTN . . . C 2 15.735 23.926 14.305 1 22.83 ? C2 MTN 201 A 1 HETATM 5 C C3 MTN . . . C 2 15.036 23.733 15.406 1 21.13 ? C3 MTN 201 A 1 HETATM 6 C C4 MTN . . . C 2 15.139 22.498 16.263 1 20.7 ? C4 MTN 201 A 1 HETATM 7 S S1 MTN . . . C 2 16.81 22.373 16.953 1 26.95 ? S1 MTN 201 A 1 HETATM 8 C C5 MTN . . . C 2 13.957 24.789 15.553 1 33.06 ? C5 MTN 201 A 1 HETATM 9 C C6 MTN . . . C 2 12.59 24.138 15.777 1 28.81 ? C6 MTN 201 A 1 HETATM 10 C C7 MTN . . . C 2 14.282 25.774 16.677 1 31.53 ? C7 MTN 201 A 1 HETATM 11 C C8 MTN . . . C 2 16.196 26.211 13.396 1 30.21 ? C8 MTN 201 A 1 HETATM 12 C C9 MTN . . . C 2 14.767 24.589 12.094 1 26.82 ? C9 MTN 201 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #