data_6PHN # _model_server_result.job_id OlgnIQ-JviycxTv0i3-94Q _model_server_result.datetime_utc '2024-11-23 08:24:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6phn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 6PHN # _exptl.entry_id 6PHN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PHN _cell.length_a 39.956 _cell.length_b 39.956 _cell.length_c 38.554 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PHN _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 4 A GLY 4 1_555 A N DTH 5 A DTH 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C DTH 5 A DTH 5 1_555 A N DPN 6 A DPN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C DPN 6 A DPN 6 1_555 A N DTH 7 A DTH 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 A C DTH 7 A DTH 7 1_555 A N DSN 8 A DSN 8 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C DTH 7 A DTH 7 1_555 A N DSN 8 A DSN 8 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C DSN 8 A DSN 8 1_555 A N DAS 9 A DAS 9 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 A C DSN 8 A DSN 8 1_555 A N DAS 9 A DAS 9 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C DAS 9 A DAS 9 1_555 A N DTY 10 A DTY 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C DTY 10 A DTY 10 1_555 A N DSN 11 A DSN 11 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.331 ? covale ? covale10 A C DTY 10 A DTY 10 1_555 A N DSN 11 A DSN 11 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.326 ? covale ? covale11 A C DSN 11 A DSN 11 1_555 A N DLY 12 A DLY 12 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.33 ? covale ? covale12 A C DSN 11 A DSN 11 1_555 A N DLY 12 A DLY 12 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.328 ? covale ? covale13 A C DLY 12 A DLY 12 1_555 A N DTY 13 A DTY 13 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 A C DLY 12 A DLY 12 1_555 A N DTY 13 A DTY 13 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 A C DTY 13 A DTY 13 1_555 A N DLE 14 A DLE 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale16 A C DLE 14 A DLE 14 1_555 A N DAS 15 A DAS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale17 A C DAS 15 A DAS 15 1_555 A N DSN 16 A DSN 16 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.33 ? covale ? covale18 A C DAS 15 A DAS 15 1_555 A N DSN 16 A DSN 16 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.331 ? covale ? covale19 A C DSN 16 A DSN 16 1_555 A N DAR 17 A DAR 17 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale20 A C DSN 16 A DSN 16 1_555 A N DAR 17 A DAR 17 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale21 A C DAR 17 A DAR 17 1_555 A N DAR 18 A DAR 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale22 A C DAR 18 A DAR 18 1_555 A N DAL 19 A DAL 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale23 A C DAL 19 A DAL 19 1_555 A N DGN 20 A DGN 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale24 A C DGN 20 A DGN 20 1_555 A N DAS 21 A DAS 21 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.326 ? covale ? covale25 A C DGN 20 A DGN 20 1_555 A N DAS 21 A DAS 21 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.331 ? covale ? covale26 A C DAS 21 A DAS 21 1_555 A N DPN 22 A DPN 22 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale27 A C DAS 21 A DAS 21 1_555 A N DPN 22 A DPN 22 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale28 A C DPN 22 A DPN 22 1_555 A N VAL 23 A VAL 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale29 A C VAL 23 A VAL 23 1_555 A N DGN 24 A DGN 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale30 A C DGN 24 A DGN 24 1_555 A N DTR 25 A DTR 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale31 A C DTR 25 A DTR 25 1_555 A N DLE 26 A DLE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale32 A C DLE 26 A DLE 26 1_555 A N MED 27 A MED 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale33 A C MED 27 A MED 27 1_555 A N DSG 28 A DSG 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6PHN _atom_sites.fract_transf_matrix[1][1] 0.025028 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025028 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025938 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 101 1 NA NA . C 3 HOH A 1 201 39 HOH HOH . C 3 HOH A 2 202 5 HOH HOH . C 3 HOH A 3 203 20 HOH HOH . C 3 HOH A 4 204 7 HOH HOH . C 3 HOH A 5 205 31 HOH HOH . C 3 HOH A 6 206 30 HOH HOH . C 3 HOH A 7 207 14 HOH HOH . C 3 HOH A 8 208 2 HOH HOH . C 3 HOH A 9 209 38 HOH HOH . C 3 HOH A 10 210 17 HOH HOH . C 3 HOH A 11 211 4 HOH HOH . C 3 HOH A 12 212 9 HOH HOH . C 3 HOH A 13 213 33 HOH HOH . C 3 HOH A 14 214 6 HOH HOH . C 3 HOH A 15 215 22 HOH HOH . C 3 HOH A 16 216 41 HOH HOH . C 3 HOH A 17 217 8 HOH HOH . C 3 HOH A 18 218 35 HOH HOH . C 3 HOH A 19 219 10 HOH HOH . C 3 HOH A 20 220 21 HOH HOH . C 3 HOH A 21 221 3 HOH HOH . C 3 HOH A 22 222 19 HOH HOH . C 3 HOH A 23 223 18 HOH HOH . C 3 HOH A 24 224 1 HOH HOH . C 3 HOH A 25 225 16 HOH HOH . C 3 HOH A 26 226 34 HOH HOH . C 3 HOH A 27 227 44 HOH HOH . C 3 HOH A 28 228 40 HOH HOH . C 3 HOH A 29 229 25 HOH HOH . C 3 HOH A 30 230 28 HOH HOH . C 3 HOH A 31 231 42 HOH HOH . C 3 HOH A 32 232 32 HOH HOH . C 3 HOH A 33 233 11 HOH HOH . C 3 HOH A 34 234 23 HOH HOH . C 3 HOH A 35 235 37 HOH HOH . C 3 HOH A 36 236 36 HOH HOH . C 3 HOH A 37 237 15 HOH HOH . C 3 HOH A 38 238 24 HOH HOH . C 3 HOH A 39 239 13 HOH HOH . C 3 HOH A 40 240 12 HOH HOH . C 3 HOH A 41 241 27 HOH HOH . C 3 HOH A 42 242 26 HOH HOH . C 3 HOH A 43 243 43 HOH HOH . C 3 HOH A 44 244 29 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 0 _atom_site.Cartn_y -19.978 _atom_site.Cartn_z -3.184 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 46 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 1 #