data_6PIB # _model_server_result.job_id ky4fE9dYm4NjosOzmTkZwQ _model_server_result.datetime_utc '2024-11-25 18:40:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pib # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6PIB # _exptl.entry_id 6PIB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 453.478 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[5-({4-[3-(trifluoromethyl)phenyl]piperazin-1-yl}sulfonyl)-2,3-dihydro-1H-indol-1-yl]ethan-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6PIB _cell.length_a 106.75 _cell.length_b 106.75 _cell.length_c 52.97 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PIB _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A CG ASP 9 A ASP 8 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc2 A OD1 ASP 9 A ASP 8 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? metalc ? metalc3 A NE2 HIS 11 A HIS 10 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc4 A OD2 ASP 42 A ASP 41 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc5 A OD2 ASP 42 A ASP 41 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc6 A OD1 ASN 80 A ASN 79 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc7 A NE2 HIS 115 A HIS 114 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc8 A ND1 HIS 196 A HIS 195 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc9 A NE2 HIS 198 A HIS 197 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc10 B MN MN . A MN 301 1_555 H O HOH . A HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc11 C MN MN . A MN 302 1_555 H O HOH . A HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? # _chem_comp.formula 'C21 H22 F3 N3 O3 S' _chem_comp.formula_weight 453.478 _chem_comp.id OKV _chem_comp.mon_nstd_flag . _chem_comp.name 1-[5-({4-[3-(trifluoromethyl)phenyl]piperazin-1-yl}sulfonyl)-2,3-dihydro-1H-indol-1-yl]ethan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 S09 OKV doub 237 n n C18 C16 OKV sing 238 n n C18 C19 OKV sing 239 n n C17 C16 OKV doub 240 n y C17 C12 OKV sing 241 n y C16 C15 OKV sing 242 n y S09 O10 OKV doub 243 n n S09 C12 OKV sing 244 n n S09 N06 OKV sing 245 n n C19 N20 OKV sing 246 n n C12 C13 OKV doub 247 n y C15 N20 OKV sing 248 n n C15 C14 OKV doub 249 n y N20 C21 OKV sing 250 n n C13 C14 OKV sing 251 n y N06 C05 OKV sing 252 n n N06 C07 OKV sing 253 n n C05 C04 OKV sing 254 n n C23 C21 OKV sing 255 n n C21 O22 OKV doub 256 n n C04 N03 OKV sing 257 n n C07 C08 OKV sing 258 n n C08 N03 OKV sing 259 n n N03 C02 OKV sing 260 n n C24 C02 OKV doub 261 n y C24 C25 OKV sing 262 n y C02 C01 OKV sing 263 n y F31 C28 OKV sing 264 n n F29 C28 OKV sing 265 n n C28 C25 OKV sing 266 n n C28 F30 OKV sing 267 n n C25 C26 OKV doub 268 n y C01 C27 OKV doub 269 n y C26 C27 OKV sing 270 n y C13 H1 OKV sing 271 n n C17 H2 OKV sing 272 n n C24 H3 OKV sing 273 n n C26 H4 OKV sing 274 n n C01 H5 OKV sing 275 n n C04 H6 OKV sing 276 n n C04 H7 OKV sing 277 n n C05 H8 OKV sing 278 n n C05 H9 OKV sing 279 n n C07 H10 OKV sing 280 n n C07 H11 OKV sing 281 n n C08 H12 OKV sing 282 n n C08 H13 OKV sing 283 n n C14 H14 OKV sing 284 n n C18 H15 OKV sing 285 n n C19 H16 OKV sing 286 n n C23 H17 OKV sing 287 n n C23 H18 OKV sing 288 n n C23 H19 OKV sing 289 n n C27 H20 OKV sing 290 n n C18 H21 OKV sing 291 n n C19 H22 OKV sing 292 n n # _atom_sites.entry_id 6PIB _atom_sites.fract_transf_matrix[1][1] 0.009368 _atom_sites.fract_transf_matrix[1][2] 0.005408 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010817 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018879 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 301 1 MN MN . C 2 MN A 1 302 2 MN MN . D 3 OKV A 1 303 1 OKV LIG . E 4 PG4 A 1 304 1 PG4 PG4 . F 4 PG4 A 1 305 2 PG4 PG4 . G 4 PG4 A 1 306 3 PG4 PG4 . H 5 HOH A 1 401 3 HOH HOH . H 5 HOH A 2 402 8 HOH HOH . H 5 HOH A 3 403 9 HOH HOH . H 5 HOH A 4 404 6 HOH HOH . H 5 HOH A 5 405 25 HOH HOH . H 5 HOH A 6 406 42 HOH HOH . H 5 HOH A 7 407 39 HOH HOH . H 5 HOH A 8 408 12 HOH HOH . H 5 HOH A 9 409 24 HOH HOH . H 5 HOH A 10 410 30 HOH HOH . H 5 HOH A 11 411 4 HOH HOH . H 5 HOH A 12 412 20 HOH HOH . H 5 HOH A 13 413 28 HOH HOH . H 5 HOH A 14 414 44 HOH HOH . H 5 HOH A 15 415 5 HOH HOH . H 5 HOH A 16 416 37 HOH HOH . H 5 HOH A 17 417 40 HOH HOH . H 5 HOH A 18 418 17 HOH HOH . H 5 HOH A 19 419 21 HOH HOH . H 5 HOH A 20 420 15 HOH HOH . H 5 HOH A 21 421 10 HOH HOH . H 5 HOH A 22 422 11 HOH HOH . H 5 HOH A 23 423 7 HOH HOH . H 5 HOH A 24 424 2 HOH HOH . H 5 HOH A 25 425 1 HOH HOH . H 5 HOH A 26 426 14 HOH HOH . H 5 HOH A 27 427 33 HOH HOH . H 5 HOH A 28 428 18 HOH HOH . H 5 HOH A 29 429 23 HOH HOH . H 5 HOH A 30 430 38 HOH HOH . H 5 HOH A 31 431 31 HOH HOH . H 5 HOH A 32 432 43 HOH HOH . H 5 HOH A 33 433 29 HOH HOH . H 5 HOH A 34 434 16 HOH HOH . H 5 HOH A 35 435 13 HOH HOH . H 5 HOH A 36 436 36 HOH HOH . H 5 HOH A 37 437 32 HOH HOH . H 5 HOH A 38 438 19 HOH HOH . H 5 HOH A 39 439 45 HOH HOH . H 5 HOH A 40 440 46 HOH HOH . H 5 HOH A 41 441 35 HOH HOH . H 5 HOH A 42 442 26 HOH HOH . H 5 HOH A 43 443 27 HOH HOH . H 5 HOH A 44 444 34 HOH HOH . H 5 HOH A 45 445 41 HOH HOH . H 5 HOH A 46 446 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 OKV . . . D 3 -7.945 -36.925 -6.376 1 49.88 ? C13 OKV 303 A 1 HETATM 2 C C15 OKV . . . D 3 -7.873 -34.539 -6.754 1 56.21 ? C15 OKV 303 A 1 HETATM 3 C C17 OKV . . . D 3 -9.571 -35.872 -7.831 1 55.92 ? C17 OKV 303 A 1 HETATM 4 C C21 OKV . . . D 3 -6.301 -32.582 -5.953 1 58.85 ? C21 OKV 303 A 1 HETATM 5 C C24 OKV . . . D 3 -14.249 -37.545 -2.703 1 51.1 ? C24 OKV 303 A 1 HETATM 6 C C26 OKV . . . D 3 -14.498 -37.907 -0.346 1 54.72 ? C26 OKV 303 A 1 HETATM 7 C C28 OKV . . . D 3 -16.292 -36.608 -1.562 1 58.62 ? C28 OKV 303 A 1 HETATM 8 C C01 OKV . . . D 3 -12.578 -38.771 -1.496 1 50.66 ? C01 OKV 303 A 1 HETATM 9 C C02 OKV . . . D 3 -13.054 -38.243 -2.683 1 50.58 ? C02 OKV 303 A 1 HETATM 10 C C04 OKV . . . D 3 -12.987 -38.112 -5.157 1 47.42 ? C04 OKV 303 A 1 HETATM 11 C C05 OKV . . . D 3 -11.957 -37.871 -6.258 1 51.69 ? C05 OKV 303 A 1 HETATM 12 C C07 OKV . . . D 3 -10.338 -39.24 -5.074 1 44.32 ? C07 OKV 303 A 1 HETATM 13 C C08 OKV . . . D 3 -11.348 -39.509 -3.965 1 48.31 ? C08 OKV 303 A 1 HETATM 14 C C12 OKV . . . D 3 -9.058 -37.015 -7.222 1 51.52 ? C12 OKV 303 A 1 HETATM 15 C C14 OKV . . . D 3 -7.351 -35.692 -6.138 1 56.64 ? C14 OKV 303 A 1 HETATM 16 C C16 OKV . . . D 3 -8.97 -34.623 -7.592 1 55.62 ? C16 OKV 303 A 1 HETATM 17 C C18 OKV . . . D 3 -9.328 -33.244 -8.119 1 58.1 ? C18 OKV 303 A 1 HETATM 18 C C19 OKV . . . D 3 -8.358 -32.295 -7.469 1 58.11 ? C19 OKV 303 A 1 HETATM 19 C C23 OKV . . . D 3 -6.032 -31.076 -6.009 1 52.5 ? C23 OKV 303 A 1 HETATM 20 C C25 OKV . . . D 3 -14.972 -37.379 -1.535 1 53.61 ? C25 OKV 303 A 1 HETATM 21 C C27 OKV . . . D 3 -13.301 -38.604 -0.325 1 55.67 ? C27 OKV 303 A 1 HETATM 22 F F29 OKV . . . D 3 -16.039 -35.304 -1.618 1 60.82 ? F29 OKV 303 A 1 HETATM 23 F F30 OKV . . . D 3 -16.987 -36.882 -0.461 1 66.37 ? F30 OKV 303 A 1 HETATM 24 F F31 OKV . . . D 3 -16.997 -36.967 -2.632 1 57.87 ? F31 OKV 303 A 1 HETATM 25 N N03 OKV . . . D 3 -12.327 -38.405 -3.866 1 52.74 ? N03 OKV 303 A 1 HETATM 26 N N06 OKV . . . D 3 -10.999 -38.959 -6.336 1 54.64 ? N06 OKV 303 A 1 HETATM 27 N N20 OKV . . . D 3 -7.44 -33.108 -6.679 1 58.72 ? N20 OKV 303 A 1 HETATM 28 O O10 OKV . . . D 3 -8.79 -39.658 -7.447 1 58.03 ? O10 OKV 303 A 1 HETATM 29 O O11 OKV . . . D 3 -10.441 -38.642 -8.853 1 49.45 ? O11 OKV 303 A 1 HETATM 30 O O22 OKV . . . D 3 -5.596 -33.303 -5.331 1 54.84 ? O22 OKV 303 A 1 HETATM 31 S S09 OKV . . . D 3 -9.823 -38.628 -7.525 1 49.23 ? S09 OKV 303 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #