data_6PIV
#
_model_server_result.job_id            mu8EFU892j4Tm4LteNzGpQ 
_model_server_result.datetime_utc      '2024-10-09 23:28:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6piv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1203}' 
#
_entry.id    6PIV 
#
_exptl.entry_id    6PIV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PIV 
_cell.length_a            55.243 
_cell.length_b            58.677 
_cell.length_c            60.012 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PIV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 135 A CYS 1097 1_555 B ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc2 A SG CYS 137 A CYS 1099 1_555 B ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc3 A SG CYS 183 A CYS 1145 1_555 B ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc4 A ND1 HIS 187 A HIS 1149 1_555 B ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6PIV 
_atom_sites.fract_transf_matrix[1][1]    0.018102 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017042 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016663 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 1201 1201 ZN ZN . 
C 3 OLJ A 1 1202 1301 OLJ LIG . 
D 4 EDO A 1 1203 1401 EDO EDO . 
E 4 EDO A 1 1204 1501 EDO EDO . 
F 4 EDO A 1 1205 1801 EDO EDO . 
G 5 SO4 A 1 1206 1 SO4 SO4 . 
H 6 HOH A 1 1301 88 HOH HOH . 
H 6 HOH A 2 1302 79 HOH HOH . 
H 6 HOH A 3 1303 125 HOH HOH . 
H 6 HOH A 4 1304 122 HOH HOH . 
H 6 HOH A 5 1305 86 HOH HOH . 
H 6 HOH A 6 1306 49 HOH HOH . 
H 6 HOH A 7 1307 118 HOH HOH . 
H 6 HOH A 8 1308 69 HOH HOH . 
H 6 HOH A 9 1309 99 HOH HOH . 
H 6 HOH A 10 1310 84 HOH HOH . 
H 6 HOH A 11 1311 7 HOH HOH . 
H 6 HOH A 12 1312 4 HOH HOH . 
H 6 HOH A 13 1313 91 HOH HOH . 
H 6 HOH A 14 1314 57 HOH HOH . 
H 6 HOH A 15 1315 98 HOH HOH . 
H 6 HOH A 16 1316 25 HOH HOH . 
H 6 HOH A 17 1317 28 HOH HOH . 
H 6 HOH A 18 1318 3 HOH HOH . 
H 6 HOH A 19 1319 139 HOH HOH . 
H 6 HOH A 20 1320 16 HOH HOH . 
H 6 HOH A 21 1321 104 HOH HOH . 
H 6 HOH A 22 1322 15 HOH HOH . 
H 6 HOH A 23 1323 48 HOH HOH . 
H 6 HOH A 24 1324 31 HOH HOH . 
H 6 HOH A 25 1325 44 HOH HOH . 
H 6 HOH A 26 1326 20 HOH HOH . 
H 6 HOH A 27 1327 17 HOH HOH . 
H 6 HOH A 28 1328 12 HOH HOH . 
H 6 HOH A 29 1329 71 HOH HOH . 
H 6 HOH A 30 1330 18 HOH HOH . 
H 6 HOH A 31 1331 128 HOH HOH . 
H 6 HOH A 32 1332 19 HOH HOH . 
H 6 HOH A 33 1333 1 HOH HOH . 
H 6 HOH A 34 1334 67 HOH HOH . 
H 6 HOH A 35 1335 58 HOH HOH . 
H 6 HOH A 36 1336 105 HOH HOH . 
H 6 HOH A 37 1337 47 HOH HOH . 
H 6 HOH A 38 1338 64 HOH HOH . 
H 6 HOH A 39 1339 41 HOH HOH . 
H 6 HOH A 40 1340 121 HOH HOH . 
H 6 HOH A 41 1341 95 HOH HOH . 
H 6 HOH A 42 1342 120 HOH HOH . 
H 6 HOH A 43 1343 97 HOH HOH . 
H 6 HOH A 44 1344 9 HOH HOH . 
H 6 HOH A 45 1345 63 HOH HOH . 
H 6 HOH A 46 1346 68 HOH HOH . 
H 6 HOH A 47 1347 61 HOH HOH . 
H 6 HOH A 48 1348 52 HOH HOH . 
H 6 HOH A 49 1349 94 HOH HOH . 
H 6 HOH A 50 1350 101 HOH HOH . 
H 6 HOH A 51 1351 66 HOH HOH . 
H 6 HOH A 52 1352 116 HOH HOH . 
H 6 HOH A 53 1353 8 HOH HOH . 
H 6 HOH A 54 1354 138 HOH HOH . 
H 6 HOH A 55 1355 55 HOH HOH . 
H 6 HOH A 56 1356 74 HOH HOH . 
H 6 HOH A 57 1357 21 HOH HOH . 
H 6 HOH A 58 1358 75 HOH HOH . 
H 6 HOH A 59 1359 2 HOH HOH . 
H 6 HOH A 60 1360 10 HOH HOH . 
H 6 HOH A 61 1361 90 HOH HOH . 
H 6 HOH A 62 1362 136 HOH HOH . 
H 6 HOH A 63 1363 11 HOH HOH . 
H 6 HOH A 64 1364 36 HOH HOH . 
H 6 HOH A 65 1365 14 HOH HOH . 
H 6 HOH A 66 1366 34 HOH HOH . 
H 6 HOH A 67 1367 72 HOH HOH . 
H 6 HOH A 68 1368 60 HOH HOH . 
H 6 HOH A 69 1369 30 HOH HOH . 
H 6 HOH A 70 1370 81 HOH HOH . 
H 6 HOH A 71 1371 65 HOH HOH . 
H 6 HOH A 72 1372 103 HOH HOH . 
H 6 HOH A 73 1373 13 HOH HOH . 
H 6 HOH A 74 1374 32 HOH HOH . 
H 6 HOH A 75 1375 42 HOH HOH . 
H 6 HOH A 76 1376 144 HOH HOH . 
H 6 HOH A 77 1377 37 HOH HOH . 
H 6 HOH A 78 1378 35 HOH HOH . 
H 6 HOH A 79 1379 62 HOH HOH . 
H 6 HOH A 80 1380 83 HOH HOH . 
H 6 HOH A 81 1381 5 HOH HOH . 
H 6 HOH A 82 1382 39 HOH HOH . 
H 6 HOH A 83 1383 117 HOH HOH . 
H 6 HOH A 84 1384 147 HOH HOH . 
H 6 HOH A 85 1385 6 HOH HOH . 
H 6 HOH A 86 1386 96 HOH HOH . 
H 6 HOH A 87 1387 112 HOH HOH . 
H 6 HOH A 88 1388 148 HOH HOH . 
H 6 HOH A 89 1389 106 HOH HOH . 
H 6 HOH A 90 1390 53 HOH HOH . 
H 6 HOH A 91 1391 78 HOH HOH . 
H 6 HOH A 92 1392 56 HOH HOH . 
H 6 HOH A 93 1393 22 HOH HOH . 
H 6 HOH A 94 1394 27 HOH HOH . 
H 6 HOH A 95 1395 76 HOH HOH . 
H 6 HOH A 96 1396 59 HOH HOH . 
H 6 HOH A 97 1397 54 HOH HOH . 
H 6 HOH A 98 1398 102 HOH HOH . 
H 6 HOH A 99 1399 50 HOH HOH . 
H 6 HOH A 100 1400 123 HOH HOH . 
H 6 HOH A 101 1401 29 HOH HOH . 
H 6 HOH A 102 1402 77 HOH HOH . 
H 6 HOH A 103 1403 100 HOH HOH . 
H 6 HOH A 104 1404 131 HOH HOH . 
H 6 HOH A 105 1405 127 HOH HOH . 
H 6 HOH A 106 1406 43 HOH HOH . 
H 6 HOH A 107 1407 85 HOH HOH . 
H 6 HOH A 108 1408 23 HOH HOH . 
H 6 HOH A 109 1409 110 HOH HOH . 
H 6 HOH A 110 1410 124 HOH HOH . 
H 6 HOH A 111 1411 134 HOH HOH . 
H 6 HOH A 112 1412 70 HOH HOH . 
H 6 HOH A 113 1413 33 HOH HOH . 
H 6 HOH A 114 1414 113 HOH HOH . 
H 6 HOH A 115 1415 146 HOH HOH . 
H 6 HOH A 116 1416 143 HOH HOH . 
H 6 HOH A 117 1417 92 HOH HOH . 
H 6 HOH A 118 1418 115 HOH HOH . 
H 6 HOH A 119 1419 73 HOH HOH . 
H 6 HOH A 120 1420 89 HOH HOH . 
H 6 HOH A 121 1421 140 HOH HOH . 
H 6 HOH A 122 1422 38 HOH HOH . 
H 6 HOH A 123 1423 40 HOH HOH . 
H 6 HOH A 124 1424 111 HOH HOH . 
H 6 HOH A 125 1425 126 HOH HOH . 
H 6 HOH A 126 1426 114 HOH HOH . 
H 6 HOH A 127 1427 135 HOH HOH . 
H 6 HOH A 128 1428 45 HOH HOH . 
H 6 HOH A 129 1429 129 HOH HOH . 
H 6 HOH A 130 1430 145 HOH HOH . 
H 6 HOH A 131 1431 26 HOH HOH . 
H 6 HOH A 132 1432 130 HOH HOH . 
H 6 HOH A 133 1433 107 HOH HOH . 
H 6 HOH A 134 1434 109 HOH HOH . 
H 6 HOH A 135 1435 87 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 4 -3.212 -16.916 23.583 1 26.5 ? C1 EDO 1203 A 1 
HETATM 2 O O1 EDO . . . D 4 -2.875 -16.486 24.907 1 37.48 ? O1 EDO 1203 A 1 
HETATM 3 C C2 EDO . . . D 4 -4.65 -17.416 23.541 1 23.65 ? C2 EDO 1203 A 1 
HETATM 4 O O2 EDO . . . D 4 -4.747 -18.647 24.267 1 33.16 ? O2 EDO 1203 A 1 
HETATM 5 H H11 EDO . . . D 4 -2.536 -17.715 23.273 1 31.92 ? H11 EDO 1203 A 1 
HETATM 6 H H12 EDO . . . D 4 -3.092 -16.085 22.885 1 31.92 ? H12 EDO 1203 A 1 
HETATM 7 H HO1 EDO . . . D 4 -1.965 -16.158 24.918 1 45.1 ? HO1 EDO 1203 A 1 
HETATM 8 H H21 EDO . . . D 4 -4.959 -17.57 22.506 1 28.49 ? H21 EDO 1203 A 1 
HETATM 9 H H22 EDO . . . D 4 -5.315 -16.672 23.983 1 28.49 ? H22 EDO 1203 A 1 
HETATM 10 H HO2 EDO . . . D 4 -5.673 -18.919 24.319 1 39.91 ? HO2 EDO 1203 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           10 
#