data_6PIY
#
_model_server_result.job_id            XFYLEwOKYYFjakLy6brSag 
_model_server_result.datetime_utc      '2024-12-18 18:36:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6piy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1206}' 
#
_entry.id    6PIY 
#
_exptl.entry_id    6PIY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PIY 
_cell.length_a            55.212 
_cell.length_b            58.649 
_cell.length_c            59.81 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PIY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 116 A CYS 1097 1_555 C ZN ZN . A ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc2 A SG CYS 118 A CYS 1099 1_555 C ZN ZN . A ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc3 A SG CYS 164 A CYS 1145 1_555 C ZN ZN . A ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc4 A ND1 HIS 168 A HIS 1149 1_555 C ZN ZN . A ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6PIY 
_atom_sites.fract_transf_matrix[1][1]    0.018112 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017051 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01672 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 OMS A 1 1201 1201 OMS LIG . 
C 3 ZN A 1 1202 1301 ZN ZN . 
D 4 EDO A 1 1203 1501 EDO EDO . 
E 4 EDO A 1 1204 1601 EDO EDO . 
F 4 EDO A 1 1205 1701 EDO EDO . 
G 4 EDO A 1 1206 1801 EDO EDO . 
H 5 SO4 A 1 1207 1 SO4 SO4 . 
I 5 SO4 A 1 1208 1 SO4 SO4 . 
J 5 SO4 A 1 1209 2 SO4 SO4 . 
K 6 HOH A 1 1301 70 HOH HOH . 
K 6 HOH A 2 1302 138 HOH HOH . 
K 6 HOH A 3 1303 82 HOH HOH . 
K 6 HOH A 4 1304 94 HOH HOH . 
K 6 HOH A 5 1305 51 HOH HOH . 
K 6 HOH A 6 1306 198 HOH HOH . 
K 6 HOH A 7 1307 30 HOH HOH . 
K 6 HOH A 8 1308 182 HOH HOH . 
K 6 HOH A 9 1309 32 HOH HOH . 
K 6 HOH A 10 1310 205 HOH HOH . 
K 6 HOH A 11 1311 137 HOH HOH . 
K 6 HOH A 12 1312 37 HOH HOH . 
K 6 HOH A 13 1313 93 HOH HOH . 
K 6 HOH A 14 1314 3 HOH HOH . 
K 6 HOH A 15 1315 44 HOH HOH . 
K 6 HOH A 16 1316 18 HOH HOH . 
K 6 HOH A 17 1317 179 HOH HOH . 
K 6 HOH A 18 1318 49 HOH HOH . 
K 6 HOH A 19 1319 134 HOH HOH . 
K 6 HOH A 20 1320 45 HOH HOH . 
K 6 HOH A 21 1321 155 HOH HOH . 
K 6 HOH A 22 1322 33 HOH HOH . 
K 6 HOH A 23 1323 25 HOH HOH . 
K 6 HOH A 24 1324 128 HOH HOH . 
K 6 HOH A 25 1325 136 HOH HOH . 
K 6 HOH A 26 1326 19 HOH HOH . 
K 6 HOH A 27 1327 102 HOH HOH . 
K 6 HOH A 28 1328 34 HOH HOH . 
K 6 HOH A 29 1329 78 HOH HOH . 
K 6 HOH A 30 1330 10 HOH HOH . 
K 6 HOH A 31 1331 165 HOH HOH . 
K 6 HOH A 32 1332 16 HOH HOH . 
K 6 HOH A 33 1333 98 HOH HOH . 
K 6 HOH A 34 1334 61 HOH HOH . 
K 6 HOH A 35 1335 56 HOH HOH . 
K 6 HOH A 36 1336 26 HOH HOH . 
K 6 HOH A 37 1337 79 HOH HOH . 
K 6 HOH A 38 1338 116 HOH HOH . 
K 6 HOH A 39 1339 62 HOH HOH . 
K 6 HOH A 40 1340 11 HOH HOH . 
K 6 HOH A 41 1341 39 HOH HOH . 
K 6 HOH A 42 1342 201 HOH HOH . 
K 6 HOH A 43 1343 15 HOH HOH . 
K 6 HOH A 44 1344 17 HOH HOH . 
K 6 HOH A 45 1345 59 HOH HOH . 
K 6 HOH A 46 1346 2 HOH HOH . 
K 6 HOH A 47 1347 180 HOH HOH . 
K 6 HOH A 48 1348 81 HOH HOH . 
K 6 HOH A 49 1349 177 HOH HOH . 
K 6 HOH A 50 1350 48 HOH HOH . 
K 6 HOH A 51 1351 13 HOH HOH . 
K 6 HOH A 52 1352 106 HOH HOH . 
K 6 HOH A 53 1353 76 HOH HOH . 
K 6 HOH A 54 1354 42 HOH HOH . 
K 6 HOH A 55 1355 57 HOH HOH . 
K 6 HOH A 56 1356 9 HOH HOH . 
K 6 HOH A 57 1357 6 HOH HOH . 
K 6 HOH A 58 1358 73 HOH HOH . 
K 6 HOH A 59 1359 80 HOH HOH . 
K 6 HOH A 60 1360 27 HOH HOH . 
K 6 HOH A 61 1361 31 HOH HOH . 
K 6 HOH A 62 1362 118 HOH HOH . 
K 6 HOH A 63 1363 181 HOH HOH . 
K 6 HOH A 64 1364 24 HOH HOH . 
K 6 HOH A 65 1365 5 HOH HOH . 
K 6 HOH A 66 1366 103 HOH HOH . 
K 6 HOH A 67 1367 176 HOH HOH . 
K 6 HOH A 68 1368 174 HOH HOH . 
K 6 HOH A 69 1369 54 HOH HOH . 
K 6 HOH A 70 1370 74 HOH HOH . 
K 6 HOH A 71 1371 35 HOH HOH . 
K 6 HOH A 72 1372 68 HOH HOH . 
K 6 HOH A 73 1373 20 HOH HOH . 
K 6 HOH A 74 1374 28 HOH HOH . 
K 6 HOH A 75 1375 1 HOH HOH . 
K 6 HOH A 76 1376 7 HOH HOH . 
K 6 HOH A 77 1377 120 HOH HOH . 
K 6 HOH A 78 1378 197 HOH HOH . 
K 6 HOH A 79 1379 22 HOH HOH . 
K 6 HOH A 80 1380 150 HOH HOH . 
K 6 HOH A 81 1381 146 HOH HOH . 
K 6 HOH A 82 1382 23 HOH HOH . 
K 6 HOH A 83 1383 141 HOH HOH . 
K 6 HOH A 84 1384 8 HOH HOH . 
K 6 HOH A 85 1385 149 HOH HOH . 
K 6 HOH A 86 1386 40 HOH HOH . 
K 6 HOH A 87 1387 115 HOH HOH . 
K 6 HOH A 88 1388 12 HOH HOH . 
K 6 HOH A 89 1389 71 HOH HOH . 
K 6 HOH A 90 1390 53 HOH HOH . 
K 6 HOH A 91 1391 36 HOH HOH . 
K 6 HOH A 92 1392 46 HOH HOH . 
K 6 HOH A 93 1393 147 HOH HOH . 
K 6 HOH A 94 1394 66 HOH HOH . 
K 6 HOH A 95 1395 43 HOH HOH . 
K 6 HOH A 96 1396 14 HOH HOH . 
K 6 HOH A 97 1397 21 HOH HOH . 
K 6 HOH A 98 1398 184 HOH HOH . 
K 6 HOH A 99 1399 112 HOH HOH . 
K 6 HOH A 100 1400 107 HOH HOH . 
K 6 HOH A 101 1401 163 HOH HOH . 
K 6 HOH A 102 1402 119 HOH HOH . 
K 6 HOH A 103 1403 164 HOH HOH . 
K 6 HOH A 104 1404 202 HOH HOH . 
K 6 HOH A 105 1405 58 HOH HOH . 
K 6 HOH A 106 1406 60 HOH HOH . 
K 6 HOH A 107 1407 87 HOH HOH . 
K 6 HOH A 108 1408 132 HOH HOH . 
K 6 HOH A 109 1409 126 HOH HOH . 
K 6 HOH A 110 1410 47 HOH HOH . 
K 6 HOH A 111 1411 193 HOH HOH . 
K 6 HOH A 112 1412 152 HOH HOH . 
K 6 HOH A 113 1413 104 HOH HOH . 
K 6 HOH A 114 1414 69 HOH HOH . 
K 6 HOH A 115 1415 131 HOH HOH . 
K 6 HOH A 116 1416 188 HOH HOH . 
K 6 HOH A 117 1417 4 HOH HOH . 
K 6 HOH A 118 1418 148 HOH HOH . 
K 6 HOH A 119 1419 100 HOH HOH . 
K 6 HOH A 120 1420 190 HOH HOH . 
K 6 HOH A 121 1421 77 HOH HOH . 
K 6 HOH A 122 1422 161 HOH HOH . 
K 6 HOH A 123 1423 160 HOH HOH . 
K 6 HOH A 124 1424 101 HOH HOH . 
K 6 HOH A 125 1425 187 HOH HOH . 
K 6 HOH A 126 1426 29 HOH HOH . 
K 6 HOH A 127 1427 170 HOH HOH . 
K 6 HOH A 128 1428 67 HOH HOH . 
K 6 HOH A 129 1429 55 HOH HOH . 
K 6 HOH A 130 1430 127 HOH HOH . 
K 6 HOH A 131 1431 88 HOH HOH . 
K 6 HOH A 132 1432 200 HOH HOH . 
K 6 HOH A 133 1433 108 HOH HOH . 
K 6 HOH A 134 1434 114 HOH HOH . 
K 6 HOH A 135 1435 83 HOH HOH . 
K 6 HOH A 136 1436 129 HOH HOH . 
K 6 HOH A 137 1437 203 HOH HOH . 
K 6 HOH A 138 1438 72 HOH HOH . 
K 6 HOH A 139 1439 52 HOH HOH . 
K 6 HOH A 140 1440 192 HOH HOH . 
K 6 HOH A 141 1441 195 HOH HOH . 
K 6 HOH A 142 1442 38 HOH HOH . 
K 6 HOH A 143 1443 169 HOH HOH . 
K 6 HOH A 144 1444 162 HOH HOH . 
K 6 HOH A 145 1445 194 HOH HOH . 
K 6 HOH A 146 1446 157 HOH HOH . 
K 6 HOH A 147 1447 196 HOH HOH . 
K 6 HOH A 148 1448 189 HOH HOH . 
K 6 HOH A 149 1449 124 HOH HOH . 
K 6 HOH A 150 1450 92 HOH HOH . 
K 6 HOH A 151 1451 159 HOH HOH . 
K 6 HOH A 152 1452 185 HOH HOH . 
K 6 HOH A 153 1453 75 HOH HOH . 
K 6 HOH A 154 1454 204 HOH HOH . 
K 6 HOH A 155 1455 133 HOH HOH . 
K 6 HOH A 156 1456 139 HOH HOH . 
K 6 HOH A 157 1457 199 HOH HOH . 
K 6 HOH A 158 1458 63 HOH HOH . 
K 6 HOH A 159 1459 173 HOH HOH . 
K 6 HOH A 160 1460 95 HOH HOH . 
K 6 HOH A 161 1461 167 HOH HOH . 
K 6 HOH A 162 1462 84 HOH HOH . 
K 6 HOH A 163 1463 64 HOH HOH . 
K 6 HOH A 164 1464 178 HOH HOH . 
K 6 HOH A 165 1465 125 HOH HOH . 
K 6 HOH A 166 1466 140 HOH HOH . 
K 6 HOH A 167 1467 151 HOH HOH . 
K 6 HOH A 168 1468 96 HOH HOH . 
K 6 HOH A 169 1469 85 HOH HOH . 
K 6 HOH A 170 1470 145 HOH HOH . 
K 6 HOH A 171 1471 86 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 4 -27.086 -23.436 19.03 1 47.9 ? C1 EDO 1206 A 1 
HETATM 2 O O1 EDO . . . G 4 -26.419 -23.812 20.24 1 49.03 ? O1 EDO 1206 A 1 
HETATM 3 C C2 EDO . . . G 4 -27.715 -24.667 18.419 1 37.81 ? C2 EDO 1206 A 1 
HETATM 4 O O2 EDO . . . G 4 -27.755 -25.673 19.431 1 43.41 ? O2 EDO 1206 A 1 
HETATM 5 H H11 EDO . . . G 4 -27.854 -22.69 19.242 1 57.51 ? H11 EDO 1206 A 1 
HETATM 6 H H12 EDO . . . G 4 -26.373 -22.995 18.331 1 57.51 ? H12 EDO 1206 A 1 
HETATM 7 H HO1 EDO . . . G 4 -26.173 -23.018 20.732 1 58.87 ? HO1 EDO 1206 A 1 
HETATM 8 H H21 EDO . . . G 4 -27.128 -25.01 17.565 1 45.4 ? H21 EDO 1206 A 1 
HETATM 9 H H22 EDO . . . G 4 -28.724 -24.444 18.065 1 45.4 ? H22 EDO 1206 A 1 
HETATM 10 H HO2 EDO . . . G 4 -28.483 -26.283 19.251 1 52.12 ? HO2 EDO 1206 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           346 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           10 
#