data_6PIZ
#
_model_server_result.job_id            2_wmXsCzMzG-W0uU_L7WlA 
_model_server_result.datetime_utc      '2024-10-09 23:29:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6piz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1204}' 
#
_entry.id    6PIZ 
#
_exptl.entry_id    6PIZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PIZ 
_cell.length_a            54.886 
_cell.length_b            58.609 
_cell.length_c            59.871 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PIZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 136 A CYS 1097 1_555 J ZN ZN . A ZN 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc2 A SG CYS 138 A CYS 1099 1_555 J ZN ZN . A ZN 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc3 A SG CYS 184 A CYS 1145 1_555 J ZN ZN . A ZN 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc4 A ND1 HIS 188 A HIS 1149 1_555 J ZN ZN . A ZN 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     6PIZ 
_atom_sites.fract_transf_matrix[1][1]    0.01822 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017062 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016703 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 1201 2999 SO4 SO4 . 
C 2 SO4 A 1 1202 2998 SO4 SO4 . 
D 3 ON4 A 1 1203 1301 ON4 LIG . 
E 4 GOL A 1 1204 1302 GOL GOL . 
F 5 EDO A 1 1205 1303 EDO EDO . 
G 5 EDO A 1 1206 1304 EDO EDO . 
H 5 EDO A 1 1207 1305 EDO EDO . 
I 5 EDO A 1 1208 1306 EDO EDO . 
J 6 ZN A 1 1209 3307 ZN ZN . 
K 7 HOH A 1 1401 1401 HOH HOH . 
K 7 HOH A 2 1402 1402 HOH HOH . 
K 7 HOH A 3 1403 1403 HOH HOH . 
K 7 HOH A 4 1404 1404 HOH HOH . 
K 7 HOH A 5 1405 1405 HOH HOH . 
K 7 HOH A 6 1406 1406 HOH HOH . 
K 7 HOH A 7 1407 1407 HOH HOH . 
K 7 HOH A 8 1408 1408 HOH HOH . 
K 7 HOH A 9 1409 1409 HOH HOH . 
K 7 HOH A 10 1410 1410 HOH HOH . 
K 7 HOH A 11 1411 1411 HOH HOH . 
K 7 HOH A 12 1412 1412 HOH HOH . 
K 7 HOH A 13 1413 1413 HOH HOH . 
K 7 HOH A 14 1414 1414 HOH HOH . 
K 7 HOH A 15 1415 1415 HOH HOH . 
K 7 HOH A 16 1416 1416 HOH HOH . 
K 7 HOH A 17 1417 1417 HOH HOH . 
K 7 HOH A 18 1418 1418 HOH HOH . 
K 7 HOH A 19 1419 1419 HOH HOH . 
K 7 HOH A 20 1420 1420 HOH HOH . 
K 7 HOH A 21 1421 1421 HOH HOH . 
K 7 HOH A 22 1422 1422 HOH HOH . 
K 7 HOH A 23 1423 1423 HOH HOH . 
K 7 HOH A 24 1424 1424 HOH HOH . 
K 7 HOH A 25 1425 1425 HOH HOH . 
K 7 HOH A 26 1426 1426 HOH HOH . 
K 7 HOH A 27 1427 1427 HOH HOH . 
K 7 HOH A 28 1428 1428 HOH HOH . 
K 7 HOH A 29 1429 1429 HOH HOH . 
K 7 HOH A 30 1430 1430 HOH HOH . 
K 7 HOH A 31 1431 1431 HOH HOH . 
K 7 HOH A 32 1432 1432 HOH HOH . 
K 7 HOH A 33 1433 1433 HOH HOH . 
K 7 HOH A 34 1434 1434 HOH HOH . 
K 7 HOH A 35 1435 1435 HOH HOH . 
K 7 HOH A 36 1436 1436 HOH HOH . 
K 7 HOH A 37 1437 1437 HOH HOH . 
K 7 HOH A 38 1438 1438 HOH HOH . 
K 7 HOH A 39 1439 1439 HOH HOH . 
K 7 HOH A 40 1440 1440 HOH HOH . 
K 7 HOH A 41 1441 1441 HOH HOH . 
K 7 HOH A 42 1442 1442 HOH HOH . 
K 7 HOH A 43 1443 1443 HOH HOH . 
K 7 HOH A 44 1444 1444 HOH HOH . 
K 7 HOH A 45 1445 1445 HOH HOH . 
K 7 HOH A 46 1446 1446 HOH HOH . 
K 7 HOH A 47 1447 1447 HOH HOH . 
K 7 HOH A 48 1448 1448 HOH HOH . 
K 7 HOH A 49 1449 1449 HOH HOH . 
K 7 HOH A 50 1450 1450 HOH HOH . 
K 7 HOH A 51 1451 1451 HOH HOH . 
K 7 HOH A 52 1452 1452 HOH HOH . 
K 7 HOH A 53 1453 1453 HOH HOH . 
K 7 HOH A 54 1454 1454 HOH HOH . 
K 7 HOH A 55 1455 1455 HOH HOH . 
K 7 HOH A 56 1456 1456 HOH HOH . 
K 7 HOH A 57 1457 1457 HOH HOH . 
K 7 HOH A 58 1458 1458 HOH HOH . 
K 7 HOH A 59 1459 1459 HOH HOH . 
K 7 HOH A 60 1460 1460 HOH HOH . 
K 7 HOH A 61 1461 1461 HOH HOH . 
K 7 HOH A 62 1462 1462 HOH HOH . 
K 7 HOH A 63 1463 1463 HOH HOH . 
K 7 HOH A 64 1464 1464 HOH HOH . 
K 7 HOH A 65 1465 1465 HOH HOH . 
K 7 HOH A 66 1466 1466 HOH HOH . 
K 7 HOH A 67 1467 1467 HOH HOH . 
K 7 HOH A 68 1468 1468 HOH HOH . 
K 7 HOH A 69 1469 1469 HOH HOH . 
K 7 HOH A 70 1470 1470 HOH HOH . 
K 7 HOH A 71 1471 1471 HOH HOH . 
K 7 HOH A 72 1472 1472 HOH HOH . 
K 7 HOH A 73 1473 1473 HOH HOH . 
K 7 HOH A 74 1474 1474 HOH HOH . 
K 7 HOH A 75 1475 1475 HOH HOH . 
K 7 HOH A 76 1476 1476 HOH HOH . 
K 7 HOH A 77 1477 1477 HOH HOH . 
K 7 HOH A 78 1478 1478 HOH HOH . 
K 7 HOH A 79 1479 1479 HOH HOH . 
K 7 HOH A 80 1480 1480 HOH HOH . 
K 7 HOH A 81 1481 1481 HOH HOH . 
K 7 HOH A 82 1482 1482 HOH HOH . 
K 7 HOH A 83 1483 1483 HOH HOH . 
K 7 HOH A 84 1484 1484 HOH HOH . 
K 7 HOH A 85 1485 1485 HOH HOH . 
K 7 HOH A 86 1486 1486 HOH HOH . 
K 7 HOH A 87 1487 1487 HOH HOH . 
K 7 HOH A 88 1488 1488 HOH HOH . 
K 7 HOH A 89 1489 1489 HOH HOH . 
K 7 HOH A 90 1490 1490 HOH HOH . 
K 7 HOH A 91 1491 1491 HOH HOH . 
K 7 HOH A 92 1492 1492 HOH HOH . 
K 7 HOH A 93 1493 1493 HOH HOH . 
K 7 HOH A 94 1494 1494 HOH HOH . 
K 7 HOH A 95 1495 1495 HOH HOH . 
K 7 HOH A 96 1496 1496 HOH HOH . 
K 7 HOH A 97 1497 1497 HOH HOH . 
K 7 HOH A 98 1498 1498 HOH HOH . 
K 7 HOH A 99 1499 1499 HOH HOH . 
K 7 HOH A 100 1500 1500 HOH HOH . 
K 7 HOH A 101 1501 1501 HOH HOH . 
K 7 HOH A 102 1502 1502 HOH HOH . 
K 7 HOH A 103 1503 1503 HOH HOH . 
K 7 HOH A 104 1504 1504 HOH HOH . 
K 7 HOH A 105 1505 1505 HOH HOH . 
K 7 HOH A 106 1506 1506 HOH HOH . 
K 7 HOH A 107 1507 1507 HOH HOH . 
K 7 HOH A 108 1508 1508 HOH HOH . 
K 7 HOH A 109 1509 1509 HOH HOH . 
K 7 HOH A 110 1510 1510 HOH HOH . 
K 7 HOH A 111 1511 1511 HOH HOH . 
K 7 HOH A 112 1512 1512 HOH HOH . 
K 7 HOH A 113 1513 1513 HOH HOH . 
K 7 HOH A 114 1514 1514 HOH HOH . 
K 7 HOH A 115 1515 1515 HOH HOH . 
K 7 HOH A 116 1516 1516 HOH HOH . 
K 7 HOH A 117 1517 1517 HOH HOH . 
K 7 HOH A 118 1518 1518 HOH HOH . 
K 7 HOH A 119 1519 1519 HOH HOH . 
K 7 HOH A 120 1520 1520 HOH HOH . 
K 7 HOH A 121 1521 1521 HOH HOH . 
K 7 HOH A 122 1522 1522 HOH HOH . 
K 7 HOH A 123 1523 1523 HOH HOH . 
K 7 HOH A 124 1524 1524 HOH HOH . 
K 7 HOH A 125 1525 1525 HOH HOH . 
K 7 HOH A 126 1526 1526 HOH HOH . 
K 7 HOH A 127 1527 1527 HOH HOH . 
K 7 HOH A 128 1528 1528 HOH HOH . 
K 7 HOH A 129 1529 1529 HOH HOH . 
K 7 HOH A 130 1530 1530 HOH HOH . 
K 7 HOH A 131 1531 1531 HOH HOH . 
K 7 HOH A 132 1532 1532 HOH HOH . 
K 7 HOH A 133 1533 1533 HOH HOH . 
K 7 HOH A 134 1534 1534 HOH HOH . 
K 7 HOH A 135 1535 1535 HOH HOH . 
K 7 HOH A 136 1536 1536 HOH HOH . 
K 7 HOH A 137 1537 1537 HOH HOH . 
K 7 HOH A 138 1538 1538 HOH HOH . 
K 7 HOH A 139 1539 1539 HOH HOH . 
K 7 HOH A 140 1540 1540 HOH HOH . 
K 7 HOH A 141 1541 1541 HOH HOH . 
K 7 HOH A 142 1542 1542 HOH HOH . 
K 7 HOH A 143 1543 1543 HOH HOH . 
K 7 HOH A 144 1544 1544 HOH HOH . 
K 7 HOH A 145 1545 1545 HOH HOH . 
K 7 HOH A 146 1546 1546 HOH HOH . 
K 7 HOH A 147 1547 1547 HOH HOH . 
K 7 HOH A 148 1548 1548 HOH HOH . 
K 7 HOH A 149 1549 1549 HOH HOH . 
K 7 HOH A 150 1550 1550 HOH HOH . 
K 7 HOH A 151 1551 1551 HOH HOH . 
K 7 HOH A 152 1552 1552 HOH HOH . 
K 7 HOH A 153 1553 1553 HOH HOH . 
K 7 HOH A 154 1554 1554 HOH HOH . 
K 7 HOH A 155 1555 1555 HOH HOH . 
K 7 HOH A 156 1556 1556 HOH HOH . 
K 7 HOH A 157 1557 1557 HOH HOH . 
K 7 HOH A 158 1558 1558 HOH HOH . 
K 7 HOH A 159 1559 1559 HOH HOH . 
K 7 HOH A 160 1560 1560 HOH HOH . 
K 7 HOH A 161 1561 1561 HOH HOH . 
K 7 HOH A 162 1562 1562 HOH HOH . 
K 7 HOH A 163 1563 1563 HOH HOH . 
K 7 HOH A 164 1564 1564 HOH HOH . 
K 7 HOH A 165 1565 1565 HOH HOH . 
K 7 HOH A 166 1566 1566 HOH HOH . 
K 7 HOH A 167 1567 1567 HOH HOH . 
K 7 HOH A 168 1568 1568 HOH HOH . 
K 7 HOH A 169 1569 1569 HOH HOH . 
K 7 HOH A 170 1570 1570 HOH HOH . 
K 7 HOH A 171 1571 1571 HOH HOH . 
K 7 HOH A 172 1572 1572 HOH HOH . 
K 7 HOH A 173 1573 1573 HOH HOH . 
K 7 HOH A 174 1574 1574 HOH HOH . 
K 7 HOH A 175 1575 1575 HOH HOH . 
K 7 HOH A 176 1576 1576 HOH HOH . 
K 7 HOH A 177 1577 1577 HOH HOH . 
K 7 HOH A 178 1578 1578 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 4 -3.976 -16.716 24.716 1 42.06 ? C1 GOL 1204 A 1 
HETATM 2 O O1 GOL . . . E 4 -2.769 -16.422 24.074 1 37.57 ? O1 GOL 1204 A 1 
HETATM 3 C C2 GOL . . . E 4 -4.658 -17.868 23.963 1 29.33 ? C2 GOL 1204 A 1 
HETATM 4 O O2 GOL . . . E 4 -4.277 -19.135 24.418 1 35.03 ? O2 GOL 1204 A 1 
HETATM 5 C C3 GOL . . . E 4 -4.258 -17.701 22.547 1 33.08 ? C3 GOL 1204 A 1 
HETATM 6 O O3 GOL . . . E 4 -2.897 -17.343 22.579 1 44.71 ? O3 GOL 1204 A 1 
HETATM 7 H H11 GOL . . . E 4 -4.577 -15.955 24.736 1 50.51 ? H11 GOL 1204 A 1 
HETATM 8 H H12 GOL . . . E 4 -3.847 -16.978 25.641 1 50.51 ? H12 GOL 1204 A 1 
HETATM 9 H HO1 GOL . . . E 4 -2.332 -15.918 24.601 1 45.12 ? HO1 GOL 1204 A 1 
HETATM 10 H H2 GOL . . . E 4 -5.616 -17.798 24.096 1 35.23 ? H2 GOL 1204 A 1 
HETATM 11 H HO2 GOL . . . E 4 -4.977 -19.613 24.477 1 42.08 ? HO2 GOL 1204 A 1 
HETATM 12 H H31 GOL . . . E 4 -4.433 -18.525 22.066 1 39.74 ? H31 GOL 1204 A 1 
HETATM 13 H H32 GOL . . . E 4 -4.827 -17.035 22.13 1 39.74 ? H32 GOL 1204 A 1 
HETATM 14 H HO3 GOL . . . E 4 -2.508 -17.905 23.085 1 53.69 ? HO3 GOL 1204 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           14 
#