data_6PJ1 # _model_server_result.job_id fqTKOGgfTxdV58EpYL3l9Q _model_server_result.datetime_utc '2024-11-15 20:48:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pj1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1202}' # _entry.id 6PJ1 # _exptl.entry_id 6PJ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PJ1 _cell.length_a 54.422 _cell.length_b 58.53 _cell.length_c 59.95 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PJ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 136 A CYS 1097 1_555 B ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc2 A SG CYS 138 A CYS 1099 1_555 B ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc3 A SG CYS 184 A CYS 1145 1_555 B ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc4 A ND1 HIS 188 A HIS 1149 1_555 B ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6PJ1 _atom_sites.fract_transf_matrix[1][1] 0.018375 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016681 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1201 1201 ZN ZN . C 3 EDO A 1 1202 1501 EDO EDO . D 3 EDO A 1 1203 1601 EDO EDO . E 3 EDO A 1 1204 1801 EDO EDO . F 4 GKM A 1 1205 2101 GKM LIG . G 3 EDO A 1 1206 2201 EDO EDO . H 5 SO4 A 1 1207 999 SO4 SO4 . I 6 HOH A 1 1301 136 HOH HOH . I 6 HOH A 2 1302 140 HOH HOH . I 6 HOH A 3 1303 79 HOH HOH . I 6 HOH A 4 1304 46 HOH HOH . I 6 HOH A 5 1305 11 HOH HOH . I 6 HOH A 6 1306 106 HOH HOH . I 6 HOH A 7 1307 178 HOH HOH . I 6 HOH A 8 1308 110 HOH HOH . I 6 HOH A 9 1309 38 HOH HOH . I 6 HOH A 10 1310 121 HOH HOH . I 6 HOH A 11 1311 62 HOH HOH . I 6 HOH A 12 1312 154 HOH HOH . I 6 HOH A 13 1313 36 HOH HOH . I 6 HOH A 14 1314 53 HOH HOH . I 6 HOH A 15 1315 13 HOH HOH . I 6 HOH A 16 1316 94 HOH HOH . I 6 HOH A 17 1317 18 HOH HOH . I 6 HOH A 18 1318 29 HOH HOH . I 6 HOH A 19 1319 150 HOH HOH . I 6 HOH A 20 1320 75 HOH HOH . I 6 HOH A 21 1321 2 HOH HOH . I 6 HOH A 22 1322 56 HOH HOH . I 6 HOH A 23 1323 73 HOH HOH . I 6 HOH A 24 1324 57 HOH HOH . I 6 HOH A 25 1325 44 HOH HOH . I 6 HOH A 26 1326 4 HOH HOH . I 6 HOH A 27 1327 159 HOH HOH . I 6 HOH A 28 1328 166 HOH HOH . I 6 HOH A 29 1329 134 HOH HOH . I 6 HOH A 30 1330 55 HOH HOH . I 6 HOH A 31 1331 128 HOH HOH . I 6 HOH A 32 1332 69 HOH HOH . I 6 HOH A 33 1333 131 HOH HOH . I 6 HOH A 34 1334 93 HOH HOH . I 6 HOH A 35 1335 176 HOH HOH . I 6 HOH A 36 1336 1 HOH HOH . I 6 HOH A 37 1337 177 HOH HOH . I 6 HOH A 38 1338 144 HOH HOH . I 6 HOH A 39 1339 74 HOH HOH . I 6 HOH A 40 1340 64 HOH HOH . I 6 HOH A 41 1341 5 HOH HOH . I 6 HOH A 42 1342 137 HOH HOH . I 6 HOH A 43 1343 77 HOH HOH . I 6 HOH A 44 1344 27 HOH HOH . I 6 HOH A 45 1345 67 HOH HOH . I 6 HOH A 46 1346 25 HOH HOH . I 6 HOH A 47 1347 37 HOH HOH . I 6 HOH A 48 1348 26 HOH HOH . I 6 HOH A 49 1349 92 HOH HOH . I 6 HOH A 50 1350 8 HOH HOH . I 6 HOH A 51 1351 88 HOH HOH . I 6 HOH A 52 1352 10 HOH HOH . I 6 HOH A 53 1353 100 HOH HOH . I 6 HOH A 54 1354 96 HOH HOH . I 6 HOH A 55 1355 49 HOH HOH . I 6 HOH A 56 1356 104 HOH HOH . I 6 HOH A 57 1357 43 HOH HOH . I 6 HOH A 58 1358 17 HOH HOH . I 6 HOH A 59 1359 130 HOH HOH . I 6 HOH A 60 1360 41 HOH HOH . I 6 HOH A 61 1361 9 HOH HOH . I 6 HOH A 62 1362 111 HOH HOH . I 6 HOH A 63 1363 103 HOH HOH . I 6 HOH A 64 1364 87 HOH HOH . I 6 HOH A 65 1365 32 HOH HOH . I 6 HOH A 66 1366 42 HOH HOH . I 6 HOH A 67 1367 84 HOH HOH . I 6 HOH A 68 1368 31 HOH HOH . I 6 HOH A 69 1369 52 HOH HOH . I 6 HOH A 70 1370 105 HOH HOH . I 6 HOH A 71 1371 85 HOH HOH . I 6 HOH A 72 1372 65 HOH HOH . I 6 HOH A 73 1373 12 HOH HOH . I 6 HOH A 74 1374 6 HOH HOH . I 6 HOH A 75 1375 7 HOH HOH . I 6 HOH A 76 1376 142 HOH HOH . I 6 HOH A 77 1377 86 HOH HOH . I 6 HOH A 78 1378 123 HOH HOH . I 6 HOH A 79 1379 47 HOH HOH . I 6 HOH A 80 1380 119 HOH HOH . I 6 HOH A 81 1381 91 HOH HOH . I 6 HOH A 82 1382 19 HOH HOH . I 6 HOH A 83 1383 141 HOH HOH . I 6 HOH A 84 1384 34 HOH HOH . I 6 HOH A 85 1385 20 HOH HOH . I 6 HOH A 86 1386 21 HOH HOH . I 6 HOH A 87 1387 3 HOH HOH . I 6 HOH A 88 1388 63 HOH HOH . I 6 HOH A 89 1389 108 HOH HOH . I 6 HOH A 90 1390 147 HOH HOH . I 6 HOH A 91 1391 95 HOH HOH . I 6 HOH A 92 1392 117 HOH HOH . I 6 HOH A 93 1393 71 HOH HOH . I 6 HOH A 94 1394 170 HOH HOH . I 6 HOH A 95 1395 109 HOH HOH . I 6 HOH A 96 1396 50 HOH HOH . I 6 HOH A 97 1397 30 HOH HOH . I 6 HOH A 98 1398 97 HOH HOH . I 6 HOH A 99 1399 51 HOH HOH . I 6 HOH A 100 1400 122 HOH HOH . I 6 HOH A 101 1401 15 HOH HOH . I 6 HOH A 102 1402 70 HOH HOH . I 6 HOH A 103 1403 68 HOH HOH . I 6 HOH A 104 1404 16 HOH HOH . I 6 HOH A 105 1405 98 HOH HOH . I 6 HOH A 106 1406 99 HOH HOH . I 6 HOH A 107 1407 45 HOH HOH . I 6 HOH A 108 1408 165 HOH HOH . I 6 HOH A 109 1409 80 HOH HOH . I 6 HOH A 110 1410 14 HOH HOH . I 6 HOH A 111 1411 113 HOH HOH . I 6 HOH A 112 1412 90 HOH HOH . I 6 HOH A 113 1413 35 HOH HOH . I 6 HOH A 114 1414 146 HOH HOH . I 6 HOH A 115 1415 116 HOH HOH . I 6 HOH A 116 1416 33 HOH HOH . I 6 HOH A 117 1417 160 HOH HOH . I 6 HOH A 118 1418 138 HOH HOH . I 6 HOH A 119 1419 124 HOH HOH . I 6 HOH A 120 1420 89 HOH HOH . I 6 HOH A 121 1421 23 HOH HOH . I 6 HOH A 122 1422 162 HOH HOH . I 6 HOH A 123 1423 72 HOH HOH . I 6 HOH A 124 1424 78 HOH HOH . I 6 HOH A 125 1425 101 HOH HOH . I 6 HOH A 126 1426 169 HOH HOH . I 6 HOH A 127 1427 164 HOH HOH . I 6 HOH A 128 1428 102 HOH HOH . I 6 HOH A 129 1429 76 HOH HOH . I 6 HOH A 130 1430 151 HOH HOH . I 6 HOH A 131 1431 22 HOH HOH . I 6 HOH A 132 1432 39 HOH HOH . I 6 HOH A 133 1433 127 HOH HOH . I 6 HOH A 134 1434 133 HOH HOH . I 6 HOH A 135 1435 58 HOH HOH . I 6 HOH A 136 1436 168 HOH HOH . I 6 HOH A 137 1437 153 HOH HOH . I 6 HOH A 138 1438 172 HOH HOH . I 6 HOH A 139 1439 107 HOH HOH . I 6 HOH A 140 1440 157 HOH HOH . I 6 HOH A 141 1441 158 HOH HOH . I 6 HOH A 142 1442 135 HOH HOH . I 6 HOH A 143 1443 129 HOH HOH . I 6 HOH A 144 1444 175 HOH HOH . I 6 HOH A 145 1445 83 HOH HOH . I 6 HOH A 146 1446 161 HOH HOH . I 6 HOH A 147 1447 81 HOH HOH . I 6 HOH A 148 1448 174 HOH HOH . I 6 HOH A 149 1449 112 HOH HOH . I 6 HOH A 150 1450 149 HOH HOH . I 6 HOH A 151 1451 115 HOH HOH . I 6 HOH A 152 1452 167 HOH HOH . I 6 HOH A 153 1453 60 HOH HOH . I 6 HOH A 154 1454 163 HOH HOH . I 6 HOH A 155 1455 152 HOH HOH . I 6 HOH A 156 1456 54 HOH HOH . I 6 HOH A 157 1457 132 HOH HOH . I 6 HOH A 158 1458 145 HOH HOH . I 6 HOH A 159 1459 40 HOH HOH . I 6 HOH A 160 1460 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 -3.464 -16.162 23.871 1 35.8 ? C1 EDO 1202 A 1 HETATM 2 O O1 EDO . . . C 3 -2.546 -16.56 24.896 1 45.45 ? O1 EDO 1202 A 1 HETATM 3 C C2 EDO . . . C 3 -4.094 -17.399 23.244 1 35.88 ? C2 EDO 1202 A 1 HETATM 4 O O2 EDO . . . C 3 -4.881 -18.075 24.23 1 48.29 ? O2 EDO 1202 A 1 HETATM 5 H H11 EDO . . . C 3 -2.938 -15.585 23.106 1 42.99 ? H11 EDO 1202 A 1 HETATM 6 H H12 EDO . . . C 3 -4.241 -15.524 24.296 1 42.99 ? H12 EDO 1202 A 1 HETATM 7 H HO1 EDO . . . C 3 -2.11 -15.777 25.259 1 54.56 ? HO1 EDO 1202 A 1 HETATM 8 H H21 EDO . . . C 3 -4.724 -17.109 22.4 1 43.07 ? H21 EDO 1202 A 1 HETATM 9 H H22 EDO . . . C 3 -3.315 -18.065 22.868 1 43.07 ? H22 EDO 1202 A 1 HETATM 10 H HO2 EDO . . . C 3 -5.341 -18.821 23.82 1 57.97 ? HO2 EDO 1202 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 30 _model_server_stats.element_count 10 #