data_6PJ2 # _model_server_result.job_id eUGI3XXEPpykaNXauRaJ_g _model_server_result.datetime_utc '2024-11-25 17:35:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pj2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":9206}' # _entry.id 6PJ2 # _exptl.entry_id 6PJ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PJ2 _cell.length_a 54.364 _cell.length_b 59.637 _cell.length_c 58.587 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PJ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 135 A CYS 1097 1_555 B ZN ZN . A ZN 9201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc2 A SG CYS 137 A CYS 1099 1_555 B ZN ZN . A ZN 9201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc3 A SG CYS 183 A CYS 1145 1_555 B ZN ZN . A ZN 9201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc4 A ND1 HIS 187 A HIS 1149 1_555 B ZN ZN . A ZN 9201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6PJ2 _atom_sites.fract_transf_matrix[1][1] 0.018395 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016768 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017069 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 9201 9201 ZN ZN . C 3 OM7 A 1 9202 1301 OM7 OM7 . D 4 EDO A 1 9203 1302 EDO EDO . E 4 EDO A 1 9204 1303 EDO EDO . F 4 EDO A 1 9205 1304 EDO EDO . G 4 EDO A 1 9206 1305 EDO EDO . H 5 SO4 A 1 9207 1999 SO4 SO4 . I 6 HOH A 1 9301 1401 HOH HOH . I 6 HOH A 2 9302 1402 HOH HOH . I 6 HOH A 3 9303 1403 HOH HOH . I 6 HOH A 4 9304 1404 HOH HOH . I 6 HOH A 5 9305 1405 HOH HOH . I 6 HOH A 6 9306 1406 HOH HOH . I 6 HOH A 7 9307 1407 HOH HOH . I 6 HOH A 8 9308 1408 HOH HOH . I 6 HOH A 9 9309 1409 HOH HOH . I 6 HOH A 10 9310 1410 HOH HOH . I 6 HOH A 11 9311 1411 HOH HOH . I 6 HOH A 12 9312 1412 HOH HOH . I 6 HOH A 13 9313 1413 HOH HOH . I 6 HOH A 14 9314 1414 HOH HOH . I 6 HOH A 15 9315 1415 HOH HOH . I 6 HOH A 16 9316 1416 HOH HOH . I 6 HOH A 17 9317 1417 HOH HOH . I 6 HOH A 18 9318 1418 HOH HOH . I 6 HOH A 19 9319 1419 HOH HOH . I 6 HOH A 20 9320 1420 HOH HOH . I 6 HOH A 21 9321 1421 HOH HOH . I 6 HOH A 22 9322 1422 HOH HOH . I 6 HOH A 23 9323 1423 HOH HOH . I 6 HOH A 24 9324 1424 HOH HOH . I 6 HOH A 25 9325 1425 HOH HOH . I 6 HOH A 26 9326 1426 HOH HOH . I 6 HOH A 27 9327 1427 HOH HOH . I 6 HOH A 28 9328 1428 HOH HOH . I 6 HOH A 29 9329 1429 HOH HOH . I 6 HOH A 30 9330 1430 HOH HOH . I 6 HOH A 31 9331 1431 HOH HOH . I 6 HOH A 32 9332 1432 HOH HOH . I 6 HOH A 33 9333 1433 HOH HOH . I 6 HOH A 34 9334 1434 HOH HOH . I 6 HOH A 35 9335 1435 HOH HOH . I 6 HOH A 36 9336 1436 HOH HOH . I 6 HOH A 37 9337 1437 HOH HOH . I 6 HOH A 38 9338 1438 HOH HOH . I 6 HOH A 39 9339 1439 HOH HOH . I 6 HOH A 40 9340 1440 HOH HOH . I 6 HOH A 41 9341 1441 HOH HOH . I 6 HOH A 42 9342 1442 HOH HOH . I 6 HOH A 43 9343 1443 HOH HOH . I 6 HOH A 44 9344 1444 HOH HOH . I 6 HOH A 45 9345 1445 HOH HOH . I 6 HOH A 46 9346 1446 HOH HOH . I 6 HOH A 47 9347 1447 HOH HOH . I 6 HOH A 48 9348 1448 HOH HOH . I 6 HOH A 49 9349 1449 HOH HOH . I 6 HOH A 50 9350 1450 HOH HOH . I 6 HOH A 51 9351 1451 HOH HOH . I 6 HOH A 52 9352 1452 HOH HOH . I 6 HOH A 53 9353 1453 HOH HOH . I 6 HOH A 54 9354 1454 HOH HOH . I 6 HOH A 55 9355 1455 HOH HOH . I 6 HOH A 56 9356 1456 HOH HOH . I 6 HOH A 57 9357 1457 HOH HOH . I 6 HOH A 58 9358 1458 HOH HOH . I 6 HOH A 59 9359 1459 HOH HOH . I 6 HOH A 60 9360 1460 HOH HOH . I 6 HOH A 61 9361 1461 HOH HOH . I 6 HOH A 62 9362 1462 HOH HOH . I 6 HOH A 63 9363 1463 HOH HOH . I 6 HOH A 64 9364 1464 HOH HOH . I 6 HOH A 65 9365 1465 HOH HOH . I 6 HOH A 66 9366 1466 HOH HOH . I 6 HOH A 67 9367 1467 HOH HOH . I 6 HOH A 68 9368 1468 HOH HOH . I 6 HOH A 69 9369 1469 HOH HOH . I 6 HOH A 70 9370 1470 HOH HOH . I 6 HOH A 71 9371 1471 HOH HOH . I 6 HOH A 72 9372 1472 HOH HOH . I 6 HOH A 73 9373 1473 HOH HOH . I 6 HOH A 74 9374 1474 HOH HOH . I 6 HOH A 75 9375 1475 HOH HOH . I 6 HOH A 76 9376 1476 HOH HOH . I 6 HOH A 77 9377 1477 HOH HOH . I 6 HOH A 78 9378 1478 HOH HOH . I 6 HOH A 79 9379 1479 HOH HOH . I 6 HOH A 80 9380 1480 HOH HOH . I 6 HOH A 81 9381 1481 HOH HOH . I 6 HOH A 82 9382 1482 HOH HOH . I 6 HOH A 83 9383 1483 HOH HOH . I 6 HOH A 84 9384 1484 HOH HOH . I 6 HOH A 85 9385 1485 HOH HOH . I 6 HOH A 86 9386 1486 HOH HOH . I 6 HOH A 87 9387 1487 HOH HOH . I 6 HOH A 88 9388 1488 HOH HOH . I 6 HOH A 89 9389 1489 HOH HOH . I 6 HOH A 90 9390 1490 HOH HOH . I 6 HOH A 91 9391 1491 HOH HOH . I 6 HOH A 92 9392 1492 HOH HOH . I 6 HOH A 93 9393 1493 HOH HOH . I 6 HOH A 94 9394 1494 HOH HOH . I 6 HOH A 95 9395 1495 HOH HOH . I 6 HOH A 96 9396 1496 HOH HOH . I 6 HOH A 97 9397 1497 HOH HOH . I 6 HOH A 98 9398 1498 HOH HOH . I 6 HOH A 99 9399 1499 HOH HOH . I 6 HOH A 100 9400 1500 HOH HOH . I 6 HOH A 101 9401 1501 HOH HOH . I 6 HOH A 102 9402 1502 HOH HOH . I 6 HOH A 103 9403 1503 HOH HOH . I 6 HOH A 104 9404 1504 HOH HOH . I 6 HOH A 105 9405 1505 HOH HOH . I 6 HOH A 106 9406 1506 HOH HOH . I 6 HOH A 107 9407 1507 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 4 -42.607 14.278 -11.66 1 63.54 ? C1 EDO 9206 A 1 HETATM 2 O O1 EDO . . . G 4 -42.461 13.294 -10.63 1 62.99 ? O1 EDO 9206 A 1 HETATM 3 C C2 EDO . . . G 4 -43.582 15.356 -11.203 1 64.59 ? C2 EDO 9206 A 1 HETATM 4 O O2 EDO . . . G 4 -43.76 16.315 -12.251 1 65.49 ? O2 EDO 9206 A 1 HETATM 5 H H11 EDO . . . G 4 -41.637 14.727 -11.883 1 76.43 ? H11 EDO 9206 A 1 HETATM 6 H H12 EDO . . . G 4 -42.977 13.806 -12.573 1 76.43 ? H12 EDO 9206 A 1 HETATM 7 H HO1 EDO . . . G 4 -41.887 12.582 -10.944 1 75.76 ? HO1 EDO 9206 A 1 HETATM 8 H H21 EDO . . . G 4 -43.196 15.85 -10.31 1 77.68 ? H21 EDO 9206 A 1 HETATM 9 H H22 EDO . . . G 4 -44.542 14.903 -10.948 1 77.68 ? H22 EDO 9206 A 1 HETATM 10 H HO2 EDO . . . G 4 -44.465 16.931 -12.008 1 78.77 ? HO2 EDO 9206 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #