data_6PK6
#
_model_server_result.job_id            0RsIKV9fbuMTo4ms9u7X2Q 
_model_server_result.datetime_utc      '2025-01-14 23:34:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pk6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1102}' 
#
_entry.id    6PK6 
#
_exptl.entry_id    6PK6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              407.509 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-(5-{[(2-aminophenyl)methyl]carbamoyl}thiophen-2-yl)-1-benzothiophene-2-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PK6 
_cell.length_a            69.132 
_cell.length_b            69.132 
_cell.length_c            104.533 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PK6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PRO 194 A PRO 848 1_555 A N PTR 195 A PTR 849 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale2 A C PTR 195 A PTR 849 1_555 A N LEU 196 A LEU 850 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
#
_chem_comp.formula           'C21 H17 N3 O2 S2' 
_chem_comp.formula_weight    407.509 
_chem_comp.id                OND 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-(5-{[(2-aminophenyl)methyl]carbamoyl}thiophen-2-yl)-1-benzothiophene-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S2 C21 OND sing 237 n y 
S2 C2 OND sing 238 n y 
C20 C21 OND doub 239 n y 
C20 C19 OND sing 240 n y 
O1 C1 OND doub 241 n n 
C21 C4 OND sing 242 n y 
C19 C18 OND doub 243 n y 
C2 C1 OND sing 244 n n 
C2 C3 OND doub 245 n y 
C1 N1 OND sing 246 n n 
C4 C3 OND sing 247 n y 
C4 C5 OND doub 248 n y 
C18 C5 OND sing 249 n y 
C5 C6 OND sing 250 n n 
C6 C7 OND doub 251 n y 
C6 S1 OND sing 252 n y 
C7 C8 OND sing 253 n y 
S1 C9 OND sing 254 n y 
C8 C9 OND doub 255 n y 
C9 C10 OND sing 256 n n 
C10 O2 OND doub 257 n n 
C10 N2 OND sing 258 n n 
N2 C11 OND sing 259 n n 
C11 C12 OND sing 260 n n 
C13 C12 OND doub 261 n y 
C13 C14 OND sing 262 n y 
C12 C17 OND sing 263 n y 
C14 C15 OND doub 264 n y 
C17 N3 OND sing 265 n n 
C17 C16 OND doub 266 n y 
C15 C16 OND sing 267 n y 
C3 H1 OND sing 268 n n 
N1 H2 OND sing 269 n n 
N1 H3 OND sing 270 n n 
N2 H4 OND sing 271 n n 
C7 H6 OND sing 272 n n 
C8 H8 OND sing 273 n n 
C11 H11 OND sing 274 n n 
C11 H12 OND sing 275 n n 
C13 H13 OND sing 276 n n 
C14 H14 OND sing 277 n n 
C15 H15 OND sing 278 n n 
C16 H16 OND sing 279 n n 
N3 H17 OND sing 280 n n 
N3 H18 OND sing 281 n n 
C18 H19 OND sing 282 n n 
C19 H20 OND sing 283 n n 
C20 H21 OND sing 284 n n 
#
_atom_sites.entry_id                     6PK6 
_atom_sites.fract_transf_matrix[1][1]    0.014465 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014465 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009566 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 1101 1101 SO4 SO4 . 
C 3 OND A 1 1102 1103 OND 329 . 
D 4 HOH A 1 1201 1255 HOH HOH . 
D 4 HOH A 2 1202 1280 HOH HOH . 
D 4 HOH A 3 1203 1351 HOH HOH . 
D 4 HOH A 4 1204 1224 HOH HOH . 
D 4 HOH A 5 1205 1301 HOH HOH . 
D 4 HOH A 6 1206 1281 HOH HOH . 
D 4 HOH A 7 1207 1321 HOH HOH . 
D 4 HOH A 8 1208 1228 HOH HOH . 
D 4 HOH A 9 1209 1266 HOH HOH . 
D 4 HOH A 10 1210 1241 HOH HOH . 
D 4 HOH A 11 1211 1317 HOH HOH . 
D 4 HOH A 12 1212 1230 HOH HOH . 
D 4 HOH A 13 1213 1240 HOH HOH . 
D 4 HOH A 14 1214 1231 HOH HOH . 
D 4 HOH A 15 1215 1339 HOH HOH . 
D 4 HOH A 16 1216 1326 HOH HOH . 
D 4 HOH A 17 1217 1304 HOH HOH . 
D 4 HOH A 18 1218 1338 HOH HOH . 
D 4 HOH A 19 1219 1246 HOH HOH . 
D 4 HOH A 20 1220 1314 HOH HOH . 
D 4 HOH A 21 1221 1211 HOH HOH . 
D 4 HOH A 22 1222 1286 HOH HOH . 
D 4 HOH A 23 1223 1300 HOH HOH . 
D 4 HOH A 24 1224 1336 HOH HOH . 
D 4 HOH A 25 1225 1285 HOH HOH . 
D 4 HOH A 26 1226 1309 HOH HOH . 
D 4 HOH A 27 1227 1284 HOH HOH . 
D 4 HOH A 28 1228 1337 HOH HOH . 
D 4 HOH A 29 1229 1221 HOH HOH . 
D 4 HOH A 30 1230 1288 HOH HOH . 
D 4 HOH A 31 1231 1210 HOH HOH . 
D 4 HOH A 32 1232 1333 HOH HOH . 
D 4 HOH A 33 1233 1200 HOH HOH . 
D 4 HOH A 34 1234 1229 HOH HOH . 
D 4 HOH A 35 1235 1232 HOH HOH . 
D 4 HOH A 36 1236 1260 HOH HOH . 
D 4 HOH A 37 1237 1308 HOH HOH . 
D 4 HOH A 38 1238 1273 HOH HOH . 
D 4 HOH A 39 1239 1298 HOH HOH . 
D 4 HOH A 40 1240 1259 HOH HOH . 
D 4 HOH A 41 1241 1215 HOH HOH . 
D 4 HOH A 42 1242 1307 HOH HOH . 
D 4 HOH A 43 1243 1243 HOH HOH . 
D 4 HOH A 44 1244 1203 HOH HOH . 
D 4 HOH A 45 1245 1264 HOH HOH . 
D 4 HOH A 46 1246 1222 HOH HOH . 
D 4 HOH A 47 1247 1277 HOH HOH . 
D 4 HOH A 48 1248 1258 HOH HOH . 
D 4 HOH A 49 1249 1312 HOH HOH . 
D 4 HOH A 50 1250 1315 HOH HOH . 
D 4 HOH A 51 1251 1252 HOH HOH . 
D 4 HOH A 52 1252 1249 HOH HOH . 
D 4 HOH A 53 1253 1292 HOH HOH . 
D 4 HOH A 54 1254 1213 HOH HOH . 
D 4 HOH A 55 1255 1299 HOH HOH . 
D 4 HOH A 56 1256 1205 HOH HOH . 
D 4 HOH A 57 1257 1236 HOH HOH . 
D 4 HOH A 58 1258 1217 HOH HOH . 
D 4 HOH A 59 1259 1212 HOH HOH . 
D 4 HOH A 60 1260 1202 HOH HOH . 
D 4 HOH A 61 1261 1316 HOH HOH . 
D 4 HOH A 62 1262 1271 HOH HOH . 
D 4 HOH A 63 1263 1208 HOH HOH . 
D 4 HOH A 64 1264 1220 HOH HOH . 
D 4 HOH A 65 1265 1294 HOH HOH . 
D 4 HOH A 66 1266 1201 HOH HOH . 
D 4 HOH A 67 1267 1234 HOH HOH . 
D 4 HOH A 68 1268 1296 HOH HOH . 
D 4 HOH A 69 1269 1289 HOH HOH . 
D 4 HOH A 70 1270 1263 HOH HOH . 
D 4 HOH A 71 1271 1267 HOH HOH . 
D 4 HOH A 72 1272 1257 HOH HOH . 
D 4 HOH A 73 1273 1227 HOH HOH . 
D 4 HOH A 74 1274 1238 HOH HOH . 
D 4 HOH A 75 1275 1244 HOH HOH . 
D 4 HOH A 76 1276 1276 HOH HOH . 
D 4 HOH A 77 1277 1347 HOH HOH . 
D 4 HOH A 78 1278 1335 HOH HOH . 
D 4 HOH A 79 1279 1214 HOH HOH . 
D 4 HOH A 80 1280 1226 HOH HOH . 
D 4 HOH A 81 1281 1318 HOH HOH . 
D 4 HOH A 82 1282 1295 HOH HOH . 
D 4 HOH A 83 1283 1261 HOH HOH . 
D 4 HOH A 84 1284 1349 HOH HOH . 
D 4 HOH A 85 1285 1320 HOH HOH . 
D 4 HOH A 86 1286 1254 HOH HOH . 
D 4 HOH A 87 1287 1305 HOH HOH . 
D 4 HOH A 88 1288 1325 HOH HOH . 
D 4 HOH A 89 1289 1341 HOH HOH . 
D 4 HOH A 90 1290 1270 HOH HOH . 
D 4 HOH A 91 1291 1253 HOH HOH . 
D 4 HOH A 92 1292 1233 HOH HOH . 
D 4 HOH A 93 1293 1235 HOH HOH . 
D 4 HOH A 94 1294 1329 HOH HOH . 
D 4 HOH A 95 1295 1248 HOH HOH . 
D 4 HOH A 96 1296 1239 HOH HOH . 
D 4 HOH A 97 1297 1206 HOH HOH . 
D 4 HOH A 98 1298 1343 HOH HOH . 
D 4 HOH A 99 1299 1283 HOH HOH . 
D 4 HOH A 100 1300 1311 HOH HOH . 
D 4 HOH A 101 1301 1245 HOH HOH . 
D 4 HOH A 102 1302 1209 HOH HOH . 
D 4 HOH A 103 1303 1251 HOH HOH . 
D 4 HOH A 104 1304 1319 HOH HOH . 
D 4 HOH A 105 1305 1216 HOH HOH . 
D 4 HOH A 106 1306 1331 HOH HOH . 
D 4 HOH A 107 1307 1278 HOH HOH . 
D 4 HOH A 108 1308 1279 HOH HOH . 
D 4 HOH A 109 1309 1225 HOH HOH . 
D 4 HOH A 110 1310 1237 HOH HOH . 
D 4 HOH A 111 1311 1247 HOH HOH . 
D 4 HOH A 112 1312 1204 HOH HOH . 
D 4 HOH A 113 1313 1219 HOH HOH . 
D 4 HOH A 114 1314 1287 HOH HOH . 
D 4 HOH A 115 1315 1346 HOH HOH . 
D 4 HOH A 116 1316 1291 HOH HOH . 
D 4 HOH A 117 1317 1272 HOH HOH . 
D 4 HOH A 118 1318 1334 HOH HOH . 
D 4 HOH A 119 1319 1275 HOH HOH . 
D 4 HOH A 120 1320 1306 HOH HOH . 
D 4 HOH A 121 1321 1242 HOH HOH . 
D 4 HOH A 122 1322 1303 HOH HOH . 
D 4 HOH A 123 1323 1340 HOH HOH . 
D 4 HOH A 124 1324 1290 HOH HOH . 
D 4 HOH A 125 1325 1313 HOH HOH . 
D 4 HOH A 126 1326 1268 HOH HOH . 
D 4 HOH A 127 1327 1342 HOH HOH . 
D 4 HOH A 128 1328 1265 HOH HOH . 
D 4 HOH A 129 1329 1310 HOH HOH . 
D 4 HOH A 130 1330 1250 HOH HOH . 
D 4 HOH A 131 1331 1207 HOH HOH . 
D 4 HOH A 132 1332 1282 HOH HOH . 
D 4 HOH A 133 1333 1223 HOH HOH . 
D 4 HOH A 134 1334 1302 HOH HOH . 
D 4 HOH A 135 1335 1218 HOH HOH . 
D 4 HOH A 136 1336 1332 HOH HOH . 
D 4 HOH A 137 1337 1348 HOH HOH . 
D 4 HOH A 138 1338 1344 HOH HOH . 
D 4 HOH A 139 1339 1330 HOH HOH . 
D 4 HOH A 140 1340 1293 HOH HOH . 
D 4 HOH A 141 1341 1328 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OND . . . C 3 14.356 9.631 -2.704 1 46.17 ? C1 OND 1102 A 1 
HETATM 2 C C2 OND . . . C 3 12.874 9.616 -2.714 1 44.19 ? C2 OND 1102 A 1 
HETATM 3 O O1 OND . . . C 3 14.951 9.859 -3.76 1 47.8 ? O1 OND 1102 A 1 
HETATM 4 C C3 OND . . . C 3 12.024 9.393 -1.672 1 42.71 ? C3 OND 1102 A 1 
HETATM 5 C C4 OND . . . C 3 10.635 9.388 -2.081 1 43.2 ? C4 OND 1102 A 1 
HETATM 6 N N1 OND . . . C 3 14.968 9.388 -1.564 1 46.95 ? N1 OND 1102 A 1 
HETATM 7 C C5 OND . . . C 3 9.472 9.148 -1.321 1 43.36 ? C5 OND 1102 A 1 
HETATM 8 N N2 OND . . . C 3 10.127 8.568 4.926 1 52.71 ? N2 OND 1102 A 1 
HETATM 9 C C6 OND . . . C 3 9.55 8.865 0.125 1 45.29 ? C6 OND 1102 A 1 
HETATM 10 S S1 OND . . . C 3 10.476 9.851 1.194 1 43.15 ? S1 OND 1102 A 1 
HETATM 11 C C7 OND . . . C 3 8.937 7.864 0.814 1 45.22 ? C7 OND 1102 A 1 
HETATM 12 C C8 OND . . . C 3 9.025 8.021 2.204 1 45.38 ? C8 OND 1102 A 1 
HETATM 13 C C9 OND . . . C 3 9.96 8.946 2.566 1 47.24 ? C9 OND 1102 A 1 
HETATM 14 C C10 OND . . . C 3 10.573 9.282 3.879 1 48.19 ? C10 OND 1102 A 1 
HETATM 15 O O2 OND . . . C 3 11.443 10.145 3.969 1 46.81 ? O2 OND 1102 A 1 
HETATM 16 C C11 OND . . . C 3 10.861 8.486 6.188 1 57.25 ? C11 OND 1102 A 1 
HETATM 17 C C12 OND . . . C 3 10.371 9.467 7.221 1 60.9 ? C12 OND 1102 A 1 
HETATM 18 C C13 OND . . . C 3 10.758 10.806 7.157 1 62.49 ? C13 OND 1102 A 1 
HETATM 19 C C14 OND . . . C 3 10.329 11.729 8.09 1 63.52 ? C14 OND 1102 A 1 
HETATM 20 C C15 OND . . . C 3 9.502 11.331 9.114 1 64.64 ? C15 OND 1102 A 1 
HETATM 21 C C16 OND . . . C 3 9.104 10.012 9.207 1 64.3 ? C16 OND 1102 A 1 
HETATM 22 C C17 OND . . . C 3 9.527 9.08 8.275 1 63.77 ? C17 OND 1102 A 1 
HETATM 23 N N3 OND . . . C 3 9.103 7.759 8.4 1 64.86 ? N3 OND 1102 A 1 
HETATM 24 C C18 OND . . . C 3 8.25 9.2 -1.96 1 43.19 ? C18 OND 1102 A 1 
HETATM 25 C C19 OND . . . C 3 8.139 9.47 -3.314 1 44.21 ? C19 OND 1102 A 1 
HETATM 26 C C20 OND . . . C 3 9.255 9.702 -4.082 1 42.28 ? C20 OND 1102 A 1 
HETATM 27 C C21 OND . . . C 3 10.507 9.661 -3.462 1 42.92 ? C21 OND 1102 A 1 
HETATM 28 S S2 OND . . . C 3 12.041 9.913 -4.218 1 42.96 ? S2 OND 1102 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           517 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           28 
#