data_6PKF # _model_server_result.job_id DWuBobvfT7ikMagdMiJKvQ _model_server_result.datetime_utc '2024-11-14 17:38:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pkf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6PKF # _exptl.entry_id 6PKF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PKF _cell.length_a 45.506 _cell.length_b 58.688 _cell.length_c 89.505 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PKF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 18 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 245 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 206 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 433 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.956 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6PKF _atom_sites.fract_transf_matrix[1][1] 0.021975 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017039 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011173 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 601 601 GOL GOL . C 3 HOH A 1 701 200 HOH HOH . C 3 HOH A 2 702 126 HOH HOH . C 3 HOH A 3 703 182 HOH HOH . C 3 HOH A 4 704 137 HOH HOH . C 3 HOH A 5 705 214 HOH HOH . C 3 HOH A 6 706 189 HOH HOH . C 3 HOH A 7 707 188 HOH HOH . C 3 HOH A 8 708 216 HOH HOH . C 3 HOH A 9 709 64 HOH HOH . C 3 HOH A 10 710 173 HOH HOH . C 3 HOH A 11 711 178 HOH HOH . C 3 HOH A 12 712 119 HOH HOH . C 3 HOH A 13 713 219 HOH HOH . C 3 HOH A 14 714 234 HOH HOH . C 3 HOH A 15 715 220 HOH HOH . C 3 HOH A 16 716 154 HOH HOH . C 3 HOH A 17 717 42 HOH HOH . C 3 HOH A 18 718 92 HOH HOH . C 3 HOH A 19 719 130 HOH HOH . C 3 HOH A 20 720 190 HOH HOH . C 3 HOH A 21 721 38 HOH HOH . C 3 HOH A 22 722 73 HOH HOH . C 3 HOH A 23 723 47 HOH HOH . C 3 HOH A 24 724 116 HOH HOH . C 3 HOH A 25 725 79 HOH HOH . C 3 HOH A 26 726 142 HOH HOH . C 3 HOH A 27 727 158 HOH HOH . C 3 HOH A 28 728 70 HOH HOH . C 3 HOH A 29 729 103 HOH HOH . C 3 HOH A 30 730 105 HOH HOH . C 3 HOH A 31 731 146 HOH HOH . C 3 HOH A 32 732 181 HOH HOH . C 3 HOH A 33 733 37 HOH HOH . C 3 HOH A 34 734 209 HOH HOH . C 3 HOH A 35 735 97 HOH HOH . C 3 HOH A 36 736 44 HOH HOH . C 3 HOH A 37 737 107 HOH HOH . C 3 HOH A 38 738 230 HOH HOH . C 3 HOH A 39 739 120 HOH HOH . C 3 HOH A 40 740 26 HOH HOH . C 3 HOH A 41 741 162 HOH HOH . C 3 HOH A 42 742 96 HOH HOH . C 3 HOH A 43 743 46 HOH HOH . C 3 HOH A 44 744 192 HOH HOH . C 3 HOH A 45 745 231 HOH HOH . C 3 HOH A 46 746 184 HOH HOH . C 3 HOH A 47 747 4 HOH HOH . C 3 HOH A 48 748 34 HOH HOH . C 3 HOH A 49 749 149 HOH HOH . C 3 HOH A 50 750 55 HOH HOH . C 3 HOH A 51 751 75 HOH HOH . C 3 HOH A 52 752 191 HOH HOH . C 3 HOH A 53 753 175 HOH HOH . C 3 HOH A 54 754 30 HOH HOH . C 3 HOH A 55 755 172 HOH HOH . C 3 HOH A 56 756 85 HOH HOH . C 3 HOH A 57 757 11 HOH HOH . C 3 HOH A 58 758 128 HOH HOH . C 3 HOH A 59 759 16 HOH HOH . C 3 HOH A 60 760 14 HOH HOH . C 3 HOH A 61 761 71 HOH HOH . C 3 HOH A 62 762 21 HOH HOH . C 3 HOH A 63 763 9 HOH HOH . C 3 HOH A 64 764 121 HOH HOH . C 3 HOH A 65 765 56 HOH HOH . C 3 HOH A 66 766 20 HOH HOH . C 3 HOH A 67 767 13 HOH HOH . C 3 HOH A 68 768 139 HOH HOH . C 3 HOH A 69 769 224 HOH HOH . C 3 HOH A 70 770 157 HOH HOH . C 3 HOH A 71 771 24 HOH HOH . C 3 HOH A 72 772 7 HOH HOH . C 3 HOH A 73 773 174 HOH HOH . C 3 HOH A 74 774 81 HOH HOH . C 3 HOH A 75 775 25 HOH HOH . C 3 HOH A 76 776 134 HOH HOH . C 3 HOH A 77 777 198 HOH HOH . C 3 HOH A 78 778 151 HOH HOH . C 3 HOH A 79 779 61 HOH HOH . C 3 HOH A 80 780 32 HOH HOH . C 3 HOH A 81 781 1 HOH HOH . C 3 HOH A 82 782 6 HOH HOH . C 3 HOH A 83 783 164 HOH HOH . C 3 HOH A 84 784 8 HOH HOH . C 3 HOH A 85 785 52 HOH HOH . C 3 HOH A 86 786 60 HOH HOH . C 3 HOH A 87 787 127 HOH HOH . C 3 HOH A 88 788 176 HOH HOH . C 3 HOH A 89 789 2 HOH HOH . C 3 HOH A 90 790 22 HOH HOH . C 3 HOH A 91 791 3 HOH HOH . C 3 HOH A 92 792 99 HOH HOH . C 3 HOH A 93 793 35 HOH HOH . C 3 HOH A 94 794 170 HOH HOH . C 3 HOH A 95 795 27 HOH HOH . C 3 HOH A 96 796 36 HOH HOH . C 3 HOH A 97 797 229 HOH HOH . C 3 HOH A 98 798 66 HOH HOH . C 3 HOH A 99 799 148 HOH HOH . C 3 HOH A 100 800 163 HOH HOH . C 3 HOH A 101 801 18 HOH HOH . C 3 HOH A 102 802 84 HOH HOH . C 3 HOH A 103 803 51 HOH HOH . C 3 HOH A 104 804 228 HOH HOH . C 3 HOH A 105 805 138 HOH HOH . C 3 HOH A 106 806 40 HOH HOH . C 3 HOH A 107 807 155 HOH HOH . C 3 HOH A 108 808 196 HOH HOH . C 3 HOH A 109 809 131 HOH HOH . C 3 HOH A 110 810 160 HOH HOH . C 3 HOH A 111 811 29 HOH HOH . C 3 HOH A 112 812 10 HOH HOH . C 3 HOH A 113 813 91 HOH HOH . C 3 HOH A 114 814 168 HOH HOH . C 3 HOH A 115 815 68 HOH HOH . C 3 HOH A 116 816 76 HOH HOH . C 3 HOH A 117 817 5 HOH HOH . C 3 HOH A 118 818 50 HOH HOH . C 3 HOH A 119 819 93 HOH HOH . C 3 HOH A 120 820 117 HOH HOH . C 3 HOH A 121 821 212 HOH HOH . C 3 HOH A 122 822 102 HOH HOH . C 3 HOH A 123 823 124 HOH HOH . C 3 HOH A 124 824 58 HOH HOH . C 3 HOH A 125 825 89 HOH HOH . C 3 HOH A 126 826 169 HOH HOH . C 3 HOH A 127 827 88 HOH HOH . C 3 HOH A 128 828 167 HOH HOH . C 3 HOH A 129 829 31 HOH HOH . C 3 HOH A 130 830 33 HOH HOH . C 3 HOH A 131 831 208 HOH HOH . C 3 HOH A 132 832 74 HOH HOH . C 3 HOH A 133 833 28 HOH HOH . C 3 HOH A 134 834 144 HOH HOH . C 3 HOH A 135 835 41 HOH HOH . C 3 HOH A 136 836 17 HOH HOH . C 3 HOH A 137 837 201 HOH HOH . C 3 HOH A 138 838 129 HOH HOH . C 3 HOH A 139 839 111 HOH HOH . C 3 HOH A 140 840 122 HOH HOH . C 3 HOH A 141 841 45 HOH HOH . C 3 HOH A 142 842 90 HOH HOH . C 3 HOH A 143 843 67 HOH HOH . C 3 HOH A 144 844 82 HOH HOH . C 3 HOH A 145 845 135 HOH HOH . C 3 HOH A 146 846 180 HOH HOH . C 3 HOH A 147 847 125 HOH HOH . C 3 HOH A 148 848 159 HOH HOH . C 3 HOH A 149 849 100 HOH HOH . C 3 HOH A 150 850 19 HOH HOH . C 3 HOH A 151 851 77 HOH HOH . C 3 HOH A 152 852 15 HOH HOH . C 3 HOH A 153 853 12 HOH HOH . C 3 HOH A 154 854 166 HOH HOH . C 3 HOH A 155 855 199 HOH HOH . C 3 HOH A 156 856 23 HOH HOH . C 3 HOH A 157 857 227 HOH HOH . C 3 HOH A 158 858 156 HOH HOH . C 3 HOH A 159 859 98 HOH HOH . C 3 HOH A 160 860 86 HOH HOH . C 3 HOH A 161 861 206 HOH HOH . C 3 HOH A 162 862 72 HOH HOH . C 3 HOH A 163 863 106 HOH HOH . C 3 HOH A 164 864 87 HOH HOH . C 3 HOH A 165 865 226 HOH HOH . C 3 HOH A 166 866 109 HOH HOH . C 3 HOH A 167 867 133 HOH HOH . C 3 HOH A 168 868 39 HOH HOH . C 3 HOH A 169 869 104 HOH HOH . C 3 HOH A 170 870 53 HOH HOH . C 3 HOH A 171 871 211 HOH HOH . C 3 HOH A 172 872 48 HOH HOH . C 3 HOH A 173 873 65 HOH HOH . C 3 HOH A 174 874 49 HOH HOH . C 3 HOH A 175 875 207 HOH HOH . C 3 HOH A 176 876 112 HOH HOH . C 3 HOH A 177 877 108 HOH HOH . C 3 HOH A 178 878 110 HOH HOH . C 3 HOH A 179 879 63 HOH HOH . C 3 HOH A 180 880 202 HOH HOH . C 3 HOH A 181 881 43 HOH HOH . C 3 HOH A 182 882 83 HOH HOH . C 3 HOH A 183 883 177 HOH HOH . C 3 HOH A 184 884 204 HOH HOH . C 3 HOH A 185 885 57 HOH HOH . C 3 HOH A 186 886 185 HOH HOH . C 3 HOH A 187 887 203 HOH HOH . C 3 HOH A 188 888 59 HOH HOH . C 3 HOH A 189 889 80 HOH HOH . C 3 HOH A 190 890 62 HOH HOH . C 3 HOH A 191 891 187 HOH HOH . C 3 HOH A 192 892 213 HOH HOH . C 3 HOH A 193 893 115 HOH HOH . C 3 HOH A 194 894 69 HOH HOH . C 3 HOH A 195 895 210 HOH HOH . C 3 HOH A 196 896 54 HOH HOH . C 3 HOH A 197 897 78 HOH HOH . C 3 HOH A 198 898 186 HOH HOH . C 3 HOH A 199 899 161 HOH HOH . C 3 HOH A 200 900 217 HOH HOH . C 3 HOH A 201 901 194 HOH HOH . C 3 HOH A 202 902 114 HOH HOH . C 3 HOH A 203 903 215 HOH HOH . C 3 HOH A 204 904 136 HOH HOH . C 3 HOH A 205 905 153 HOH HOH . C 3 HOH A 206 906 232 HOH HOH . C 3 HOH A 207 907 95 HOH HOH . C 3 HOH A 208 908 152 HOH HOH . C 3 HOH A 209 909 205 HOH HOH . C 3 HOH A 210 910 141 HOH HOH . C 3 HOH A 211 911 94 HOH HOH . C 3 HOH A 212 912 223 HOH HOH . C 3 HOH A 213 913 143 HOH HOH . C 3 HOH A 214 914 123 HOH HOH . C 3 HOH A 215 915 195 HOH HOH . C 3 HOH A 216 916 197 HOH HOH . C 3 HOH A 217 917 150 HOH HOH . C 3 HOH A 218 918 193 HOH HOH . C 3 HOH A 219 919 179 HOH HOH . C 3 HOH A 220 920 218 HOH HOH . C 3 HOH A 221 921 171 HOH HOH . C 3 HOH A 222 922 225 HOH HOH . C 3 HOH A 223 923 118 HOH HOH . C 3 HOH A 224 924 183 HOH HOH . C 3 HOH A 225 925 132 HOH HOH . C 3 HOH A 226 926 101 HOH HOH . C 3 HOH A 227 927 165 HOH HOH . C 3 HOH A 228 928 113 HOH HOH . C 3 HOH A 229 929 221 HOH HOH . C 3 HOH A 230 930 233 HOH HOH . C 3 HOH A 231 931 140 HOH HOH . C 3 HOH A 232 932 147 HOH HOH . C 3 HOH A 233 933 222 HOH HOH . C 3 HOH A 234 934 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 32.191 -15.727 4.041 1 15.59 ? C1 GOL 601 A 1 HETATM 2 O O1 GOL . . . B 2 31.74 -17.098 3.999 1 47.64 ? O1 GOL 601 A 1 HETATM 3 C C2 GOL . . . B 2 32.622 -15.953 2.325 1 34.62 ? C2 GOL 601 A 1 HETATM 4 O O2 GOL . . . B 2 31.491 -15.522 1.502 1 20.12 ? O2 GOL 601 A 1 HETATM 5 C C3 GOL . . . B 2 34.031 -15.279 2.179 1 26.15 ? C3 GOL 601 A 1 HETATM 6 O O3 GOL . . . B 2 34.287 -15.029 0.818 1 20.86 ? O3 GOL 601 A 1 HETATM 7 H H11 GOL . . . B 2 31.523 -15.046 4.213 1 18.71 ? H11 GOL 601 A 1 HETATM 8 H H12 GOL . . . B 2 32.935 -15.523 4.63 1 18.71 ? H12 GOL 601 A 1 HETATM 9 H HO1 GOL . . . B 2 30.889 -17.092 3.83 1 57.17 ? HO1 GOL 601 A 1 HETATM 10 H H2 GOL . . . B 2 32.763 -16.864 2.023 1 41.55 ? H2 GOL 601 A 1 HETATM 11 H HO2 GOL . . . B 2 31.748 -15.468 0.701 1 24.15 ? HO2 GOL 601 A 1 HETATM 12 H H31 GOL . . . B 2 34.037 -14.472 2.718 1 31.39 ? H31 GOL 601 A 1 HETATM 13 H H32 GOL . . . B 2 34.689 -15.864 2.586 1 31.39 ? H32 GOL 601 A 1 HETATM 14 H HO3 GOL . . . B 2 34.777 -14.346 0.781 1 25.04 ? HO3 GOL 601 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #