data_6PL4 # _model_server_result.job_id t1yqSBtt27SYqE2SjUP8ig _model_server_result.datetime_utc '2024-11-04 22:25:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pl4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 6PL4 # _exptl.entry_id 6PL4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 485.458 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-{[5-(methoxymethyl)-2-(trifluoromethoxy)phenyl]methyl}-N'-(8-methyl-2-phenylimidazo[1,2-a]pyrazin-3-yl)urea" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6PL4 _cell.length_a 52.052 _cell.length_b 52.052 _cell.length_c 227.917 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PL4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 151 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 1 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 192 A TYR 676 1_555 A N SEP 193 A SEP 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C SEP 193 A SEP 677 1_555 A N THR 194 A THR 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C24 H22 F3 N5 O3' _chem_comp.formula_weight 485.458 _chem_comp.id OO7 _chem_comp.mon_nstd_flag . _chem_comp.name "N-{[5-(methoxymethyl)-2-(trifluoromethoxy)phenyl]methyl}-N'-(8-methyl-2-phenylimidazo[1,2-a]pyrazin-3-yl)urea" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N26 C27 OO7 sing 237 n y N26 C24 OO7 doub 238 n y C25 C24 OO7 sing 239 n n C27 C28 OO7 doub 240 n y C24 C23 OO7 sing 241 n y F3 C2 OO7 sing 242 n n C28 N29 OO7 sing 243 n y O18 C17 OO7 doub 244 n n C23 N29 OO7 sing 245 n y C23 N22 OO7 doub 246 n y N29 C20 OO7 sing 247 n y O5 C2 OO7 sing 248 n n O5 C6 OO7 sing 249 n n N22 C21 OO7 sing 250 n y C2 F4 OO7 sing 251 n n C2 F1 OO7 sing 252 n n C17 N19 OO7 sing 253 n n C17 N16 OO7 sing 254 n n C20 C21 OO7 doub 255 n y C20 N19 OO7 sing 256 n n C15 N16 OO7 sing 257 n n C15 C14 OO7 sing 258 n n C21 C30 OO7 sing 259 n n C31 C30 OO7 doub 260 n y C31 C32 OO7 sing 261 n y C6 C14 OO7 doub 262 n y C6 C7 OO7 sing 263 n y C30 C35 OO7 sing 264 n y C14 C13 OO7 sing 265 n y C32 C33 OO7 doub 266 n y C7 C8 OO7 doub 267 n y C35 C34 OO7 doub 268 n y C13 C9 OO7 doub 269 n y C33 C34 OO7 sing 270 n y C8 C9 OO7 sing 271 n y C9 C10 OO7 sing 272 n n C10 O11 OO7 sing 273 n n O11 C12 OO7 sing 274 n n C7 H1 OO7 sing 275 n n C8 H2 OO7 sing 276 n n C12 H3 OO7 sing 277 n n C12 H4 OO7 sing 278 n n C12 H5 OO7 sing 279 n n C15 H6 OO7 sing 280 n n C15 H7 OO7 sing 281 n n C27 H8 OO7 sing 282 n n C31 H9 OO7 sing 283 n n C32 H10 OO7 sing 284 n n C33 H11 OO7 sing 285 n n C34 H12 OO7 sing 286 n n C35 H13 OO7 sing 287 n n C10 H14 OO7 sing 288 n n C10 H15 OO7 sing 289 n n C13 H16 OO7 sing 290 n n N16 H17 OO7 sing 291 n n N19 H18 OO7 sing 292 n n C25 H19 OO7 sing 293 n n C25 H20 OO7 sing 294 n n C25 H21 OO7 sing 295 n n C28 H22 OO7 sing 296 n n # _atom_sites.entry_id 6PL4 _atom_sites.fract_transf_matrix[1][1] 0.019212 _atom_sites.fract_transf_matrix[1][2] 0.011092 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022184 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004388 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OO7 A 1 801 1 OO7 INX . C 3 HOH A 1 901 128 HOH HOH . C 3 HOH A 2 902 115 HOH HOH . C 3 HOH A 3 903 105 HOH HOH . C 3 HOH A 4 904 94 HOH HOH . C 3 HOH A 5 905 20 HOH HOH . C 3 HOH A 6 906 152 HOH HOH . C 3 HOH A 7 907 84 HOH HOH . C 3 HOH A 8 908 6 HOH HOH . C 3 HOH A 9 909 45 HOH HOH . C 3 HOH A 10 910 159 HOH HOH . C 3 HOH A 11 911 138 HOH HOH . C 3 HOH A 12 912 79 HOH HOH . C 3 HOH A 13 913 19 HOH HOH . C 3 HOH A 14 914 12 HOH HOH . C 3 HOH A 15 915 11 HOH HOH . C 3 HOH A 16 916 73 HOH HOH . C 3 HOH A 17 917 63 HOH HOH . C 3 HOH A 18 918 124 HOH HOH . C 3 HOH A 19 919 127 HOH HOH . C 3 HOH A 20 920 10 HOH HOH . C 3 HOH A 21 921 100 HOH HOH . C 3 HOH A 22 922 125 HOH HOH . C 3 HOH A 23 923 129 HOH HOH . C 3 HOH A 24 924 70 HOH HOH . C 3 HOH A 25 925 122 HOH HOH . C 3 HOH A 26 926 145 HOH HOH . C 3 HOH A 27 927 85 HOH HOH . C 3 HOH A 28 928 76 HOH HOH . C 3 HOH A 29 929 42 HOH HOH . C 3 HOH A 30 930 91 HOH HOH . C 3 HOH A 31 931 140 HOH HOH . C 3 HOH A 32 932 31 HOH HOH . C 3 HOH A 33 933 64 HOH HOH . C 3 HOH A 34 934 34 HOH HOH . C 3 HOH A 35 935 104 HOH HOH . C 3 HOH A 36 936 7 HOH HOH . C 3 HOH A 37 937 142 HOH HOH . C 3 HOH A 38 938 44 HOH HOH . C 3 HOH A 39 939 74 HOH HOH . C 3 HOH A 40 940 21 HOH HOH . C 3 HOH A 41 941 114 HOH HOH . C 3 HOH A 42 942 2 HOH HOH . C 3 HOH A 43 943 126 HOH HOH . C 3 HOH A 44 944 92 HOH HOH . C 3 HOH A 45 945 81 HOH HOH . C 3 HOH A 46 946 75 HOH HOH . C 3 HOH A 47 947 112 HOH HOH . C 3 HOH A 48 948 106 HOH HOH . C 3 HOH A 49 949 118 HOH HOH . C 3 HOH A 50 950 98 HOH HOH . C 3 HOH A 51 951 157 HOH HOH . C 3 HOH A 52 952 72 HOH HOH . C 3 HOH A 53 953 5 HOH HOH . C 3 HOH A 54 954 93 HOH HOH . C 3 HOH A 55 955 135 HOH HOH . C 3 HOH A 56 956 4 HOH HOH . C 3 HOH A 57 957 87 HOH HOH . C 3 HOH A 58 958 150 HOH HOH . C 3 HOH A 59 959 37 HOH HOH . C 3 HOH A 60 960 9 HOH HOH . C 3 HOH A 61 961 109 HOH HOH . C 3 HOH A 62 962 83 HOH HOH . C 3 HOH A 63 963 89 HOH HOH . C 3 HOH A 64 964 30 HOH HOH . C 3 HOH A 65 965 130 HOH HOH . C 3 HOH A 66 966 3 HOH HOH . C 3 HOH A 67 967 1 HOH HOH . C 3 HOH A 68 968 16 HOH HOH . C 3 HOH A 69 969 29 HOH HOH . C 3 HOH A 70 970 22 HOH HOH . C 3 HOH A 71 971 119 HOH HOH . C 3 HOH A 72 972 149 HOH HOH . C 3 HOH A 73 973 23 HOH HOH . C 3 HOH A 74 974 33 HOH HOH . C 3 HOH A 75 975 8 HOH HOH . C 3 HOH A 76 976 108 HOH HOH . C 3 HOH A 77 977 36 HOH HOH . C 3 HOH A 78 978 123 HOH HOH . C 3 HOH A 79 979 151 HOH HOH . C 3 HOH A 80 980 82 HOH HOH . C 3 HOH A 81 981 134 HOH HOH . C 3 HOH A 82 982 14 HOH HOH . C 3 HOH A 83 983 116 HOH HOH . C 3 HOH A 84 984 15 HOH HOH . C 3 HOH A 85 985 53 HOH HOH . C 3 HOH A 86 986 147 HOH HOH . C 3 HOH A 87 987 131 HOH HOH . C 3 HOH A 88 988 78 HOH HOH . C 3 HOH A 89 989 141 HOH HOH . C 3 HOH A 90 990 153 HOH HOH . C 3 HOH A 91 991 136 HOH HOH . C 3 HOH A 92 992 102 HOH HOH . C 3 HOH A 93 993 154 HOH HOH . C 3 HOH A 94 994 156 HOH HOH . C 3 HOH A 95 995 71 HOH HOH . C 3 HOH A 96 996 101 HOH HOH . C 3 HOH A 97 997 13 HOH HOH . C 3 HOH A 98 998 143 HOH HOH . C 3 HOH A 99 999 113 HOH HOH . C 3 HOH A 100 1000 155 HOH HOH . C 3 HOH A 101 1001 137 HOH HOH . C 3 HOH A 102 1002 110 HOH HOH . C 3 HOH A 103 1003 86 HOH HOH . C 3 HOH A 104 1004 148 HOH HOH . C 3 HOH A 105 1005 139 HOH HOH . C 3 HOH A 106 1006 117 HOH HOH . C 3 HOH A 107 1007 107 HOH HOH . C 3 HOH A 108 1008 158 HOH HOH . C 3 HOH A 109 1009 146 HOH HOH . C 3 HOH A 110 1010 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 OO7 . . . B 2 16.633 -19.919 -24.746 1 51.69 ? C2 OO7 801 A 1 HETATM 2 C C6 OO7 . . . B 2 18.023 -21.547 -23.701 1 40.27 ? C6 OO7 801 A 1 HETATM 3 C C7 OO7 . . . B 2 18.901 -20.901 -22.832 1 42.77 ? C7 OO7 801 A 1 HETATM 4 C C8 OO7 . . . B 2 19.348 -21.531 -21.682 1 40.98 ? C8 OO7 801 A 1 HETATM 5 C C12 OO7 . . . B 2 18.826 -24.297 -17.986 1 42.1 ? C12 OO7 801 A 1 HETATM 6 C C15 OO7 . . . B 2 16.654 -23.478 -24.432 1 32.48 ? C15 OO7 801 A 1 HETATM 7 C C17 OO7 . . . B 2 16.529 -25.971 -24.554 1 33.57 ? C17 OO7 801 A 1 HETATM 8 C C21 OO7 . . . B 2 17.303 -29.195 -24.277 1 40.19 ? C21 OO7 801 A 1 HETATM 9 N N22 OO7 . . . B 2 17.045 -30.386 -24.833 1 38.24 ? N22 OO7 801 A 1 HETATM 10 C C23 OO7 . . . B 2 15.839 -30.386 -25.344 1 47.71 ? C23 OO7 801 A 1 HETATM 11 C C24 OO7 . . . B 2 15.09 -31.365 -26.03 1 50.27 ? C24 OO7 801 A 1 HETATM 12 C C27 OO7 . . . B 2 13.304 -29.863 -26.212 1 52.2 ? C27 OO7 801 A 1 HETATM 13 C C30 OO7 . . . B 2 18.553 -28.884 -23.555 1 38.73 ? C30 OO7 801 A 1 HETATM 14 C C31 OO7 . . . B 2 19.723 -29.591 -23.843 1 41.55 ? C31 OO7 801 A 1 HETATM 15 C C32 OO7 . . . B 2 20.882 -29.319 -23.137 1 43.74 ? C32 OO7 801 A 1 HETATM 16 C C33 OO7 . . . B 2 20.871 -28.386 -22.111 1 40.58 ? C33 OO7 801 A 1 HETATM 17 C C34 OO7 . . . B 2 19.703 -27.719 -21.783 1 32.61 ? C34 OO7 801 A 1 HETATM 18 C C35 OO7 . . . B 2 18.547 -27.969 -22.489 1 33.43 ? C35 OO7 801 A 1 HETATM 19 F F1 OO7 . . . B 2 15.604 -20.334 -23.906 1 57.52 ? F1 OO7 801 A 1 HETATM 20 F F3 OO7 . . . B 2 16.141 -19.688 -26.017 1 51.42 ? F3 OO7 801 A 1 HETATM 21 F F4 OO7 . . . B 2 17.235 -18.769 -24.264 1 54.35 ? F4 OO7 801 A 1 HETATM 22 O O5 OO7 . . . B 2 17.607 -20.931 -24.841 1 51.66 ? O5 OO7 801 A 1 HETATM 23 C C9 OO7 . . . B 2 18.932 -22.821 -21.401 1 34.49 ? C9 OO7 801 A 1 HETATM 24 C C10 OO7 . . . B 2 19.45 -23.492 -20.145 1 34.95 ? C10 OO7 801 A 1 HETATM 25 O O11 OO7 . . . B 2 18.478 -23.488 -19.106 1 35.22 ? O11 OO7 801 A 1 HETATM 26 C C13 OO7 . . . B 2 18.059 -23.477 -22.275 1 35.46 ? C13 OO7 801 A 1 HETATM 27 C C14 OO7 . . . B 2 17.598 -22.84 -23.431 1 37.03 ? C14 OO7 801 A 1 HETATM 28 N N16 OO7 . . . B 2 16.186 -24.788 -24.006 1 31.35 ? N16 OO7 801 A 1 HETATM 29 O O18 OO7 . . . B 2 17.305 -26.039 -25.485 1 42.07 ? O18 OO7 801 A 1 HETATM 30 N N19 OO7 . . . B 2 15.97 -27.083 -24.019 1 36.57 ? N19 OO7 801 A 1 HETATM 31 C C20 OO7 . . . B 2 16.186 -28.394 -24.454 1 44.86 ? C20 OO7 801 A 1 HETATM 32 C C25 OO7 . . . B 2 15.677 -32.732 -26.272 1 49.6 ? C25 OO7 801 A 1 HETATM 33 N N26 OO7 . . . B 2 13.863 -31.071 -26.419 1 52.61 ? N26 OO7 801 A 1 HETATM 34 C C28 OO7 . . . B 2 13.989 -28.887 -25.569 1 47.74 ? C28 OO7 801 A 1 HETATM 35 N N29 OO7 . . . B 2 15.266 -29.145 -25.121 1 46.54 ? N29 OO7 801 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #