data_6PLB
#
_model_server_result.job_id            FINFhMHd9nldMQfMEViOAQ 
_model_server_result.datetime_utc      '2024-12-23 09:11:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6plb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    6PLB 
#
_exptl.entry_id    6PLB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              509.085 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-(1-chloranyl-2,3,4,5,6-pentamethyl-1$l^{7}-iridapentacyclo[2.2.0.0^{1,3}.0^{1,5}.0^{2,6}]hexan-1-yl)-1,3-dimethyl-benzimidazole 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PLB 
_cell.length_a            78.338 
_cell.length_b            78.338 
_cell.length_c            37.833 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PLB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc1 A O SER 60 A SER 60 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc2 A O CYS 64 A CYS 64 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? 
metalc ? metalc3 A OG SER 72 A SER 72 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc4 A O ARG 73 A ARG 73 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? 
metalc ? metalc5 A OD2 ASP 101 A ASP 101 1_555 B IR OT1 . A OT1 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? 
metalc ? metalc6 C NA NA . A NA 202 1_555 D O HOH . A HOH 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? 
metalc ? metalc7 C NA NA . A NA 202 1_555 D O HOH . A HOH 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
#
_chem_comp.formula           'C19 H25 Cl Ir N2' 
_chem_comp.formula_weight    509.085 
_chem_comp.id                OT1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-(1-chloranyl-2,3,4,5,6-pentamethyl-1$l^{7}-iridapentacyclo[2.2.0.0^{1,3}.0^{1,5}.0^{2,6}]hexan-1-yl)-1,3-dimethyl-benzimidazole 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N1 OT1 sing 237 n y 
C1 N2 OT1 doub 238 n y 
C1 IR OT1 sing 239 n n 
C2 N1 OT1 sing 240 n n 
C3 N2 OT1 sing 241 n n 
C4 C5 OT1 doub 242 n y 
C4 C9 OT1 sing 243 n y 
C4 N2 OT1 sing 244 n y 
C5 C6 OT1 sing 245 n y 
C5 N1 OT1 sing 246 n y 
C6 C7 OT1 doub 247 n y 
C7 C8 OT1 sing 248 n y 
C8 C9 OT1 doub 249 n y 
C10 C11 OT1 sing 250 n n 
C10 C12 OT1 sing 251 n n 
C10 C18 OT1 sing 252 n n 
C10 IR OT1 sing 253 n n 
C12 C13 OT1 sing 254 n n 
C12 C14 OT1 sing 255 n n 
C12 IR OT1 sing 256 n n 
C14 C15 OT1 sing 257 n n 
C14 C16 OT1 sing 258 n n 
C14 IR OT1 sing 259 n n 
C16 C17 OT1 sing 260 n n 
C16 C18 OT1 sing 261 n n 
C16 IR OT1 sing 262 n n 
C18 C19 OT1 sing 263 n n 
C18 IR OT1 sing 264 n n 
IR CL1 OT1 sing 265 n n 
C2 H1 OT1 sing 266 n n 
C2 H2 OT1 sing 267 n n 
C2 H3 OT1 sing 268 n n 
C3 H4 OT1 sing 269 n n 
C3 H5 OT1 sing 270 n n 
C3 H6 OT1 sing 271 n n 
C6 H7 OT1 sing 272 n n 
C7 H8 OT1 sing 273 n n 
C8 H9 OT1 sing 274 n n 
C9 H10 OT1 sing 275 n n 
C11 H11 OT1 sing 276 n n 
C11 H12 OT1 sing 277 n n 
C11 H13 OT1 sing 278 n n 
C13 H14 OT1 sing 279 n n 
C13 H15 OT1 sing 280 n n 
C13 H16 OT1 sing 281 n n 
C15 H17 OT1 sing 282 n n 
C15 H18 OT1 sing 283 n n 
C15 H19 OT1 sing 284 n n 
C17 H20 OT1 sing 285 n n 
C17 H21 OT1 sing 286 n n 
C17 H22 OT1 sing 287 n n 
C19 H23 OT1 sing 288 n n 
C19 H24 OT1 sing 289 n n 
C19 H25 OT1 sing 290 n n 
#
_atom_sites.entry_id                     6PLB 
_atom_sites.fract_transf_matrix[1][1]    0.012765 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012765 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026432 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 OT1 A 1 201 201 OT1 I1N . 
C 3 NA A 1 202 1 NA NA . 
D 4 HOH A 1 301 99 HOH HOH . 
D 4 HOH A 2 302 40 HOH HOH . 
D 4 HOH A 3 303 43 HOH HOH . 
D 4 HOH A 4 304 60 HOH HOH . 
D 4 HOH A 5 305 39 HOH HOH . 
D 4 HOH A 6 306 58 HOH HOH . 
D 4 HOH A 7 307 81 HOH HOH . 
D 4 HOH A 8 308 2 HOH HOH . 
D 4 HOH A 9 309 93 HOH HOH . 
D 4 HOH A 10 310 21 HOH HOH . 
D 4 HOH A 11 311 76 HOH HOH . 
D 4 HOH A 12 312 88 HOH HOH . 
D 4 HOH A 13 313 23 HOH HOH . 
D 4 HOH A 14 314 17 HOH HOH . 
D 4 HOH A 15 315 59 HOH HOH . 
D 4 HOH A 16 316 50 HOH HOH . 
D 4 HOH A 17 317 86 HOH HOH . 
D 4 HOH A 18 318 11 HOH HOH . 
D 4 HOH A 19 319 106 HOH HOH . 
D 4 HOH A 20 320 34 HOH HOH . 
D 4 HOH A 21 321 101 HOH HOH . 
D 4 HOH A 22 322 94 HOH HOH . 
D 4 HOH A 23 323 84 HOH HOH . 
D 4 HOH A 24 324 79 HOH HOH . 
D 4 HOH A 25 325 24 HOH HOH . 
D 4 HOH A 26 326 20 HOH HOH . 
D 4 HOH A 27 327 16 HOH HOH . 
D 4 HOH A 28 328 5 HOH HOH . 
D 4 HOH A 29 329 80 HOH HOH . 
D 4 HOH A 30 330 35 HOH HOH . 
D 4 HOH A 31 331 65 HOH HOH . 
D 4 HOH A 32 332 57 HOH HOH . 
D 4 HOH A 33 333 85 HOH HOH . 
D 4 HOH A 34 334 38 HOH HOH . 
D 4 HOH A 35 335 26 HOH HOH . 
D 4 HOH A 36 336 83 HOH HOH . 
D 4 HOH A 37 337 61 HOH HOH . 
D 4 HOH A 38 338 45 HOH HOH . 
D 4 HOH A 39 339 4 HOH HOH . 
D 4 HOH A 40 340 75 HOH HOH . 
D 4 HOH A 41 341 28 HOH HOH . 
D 4 HOH A 42 342 103 HOH HOH . 
D 4 HOH A 43 343 13 HOH HOH . 
D 4 HOH A 44 344 9 HOH HOH . 
D 4 HOH A 45 345 47 HOH HOH . 
D 4 HOH A 46 346 6 HOH HOH . 
D 4 HOH A 47 347 19 HOH HOH . 
D 4 HOH A 48 348 69 HOH HOH . 
D 4 HOH A 49 349 46 HOH HOH . 
D 4 HOH A 50 350 31 HOH HOH . 
D 4 HOH A 51 351 102 HOH HOH . 
D 4 HOH A 52 352 51 HOH HOH . 
D 4 HOH A 53 353 8 HOH HOH . 
D 4 HOH A 54 354 1 HOH HOH . 
D 4 HOH A 55 355 36 HOH HOH . 
D 4 HOH A 56 356 37 HOH HOH . 
D 4 HOH A 57 357 70 HOH HOH . 
D 4 HOH A 58 358 29 HOH HOH . 
D 4 HOH A 59 359 14 HOH HOH . 
D 4 HOH A 60 360 25 HOH HOH . 
D 4 HOH A 61 361 49 HOH HOH . 
D 4 HOH A 62 362 7 HOH HOH . 
D 4 HOH A 63 363 62 HOH HOH . 
D 4 HOH A 64 364 92 HOH HOH . 
D 4 HOH A 65 365 42 HOH HOH . 
D 4 HOH A 66 366 12 HOH HOH . 
D 4 HOH A 67 367 82 HOH HOH . 
D 4 HOH A 68 368 18 HOH HOH . 
D 4 HOH A 69 369 54 HOH HOH . 
D 4 HOH A 70 370 105 HOH HOH . 
D 4 HOH A 71 371 53 HOH HOH . 
D 4 HOH A 72 372 67 HOH HOH . 
D 4 HOH A 73 373 30 HOH HOH . 
D 4 HOH A 74 374 44 HOH HOH . 
D 4 HOH A 75 375 66 HOH HOH . 
D 4 HOH A 76 376 48 HOH HOH . 
D 4 HOH A 77 377 64 HOH HOH . 
D 4 HOH A 78 378 15 HOH HOH . 
D 4 HOH A 79 379 27 HOH HOH . 
D 4 HOH A 80 380 89 HOH HOH . 
D 4 HOH A 81 381 10 HOH HOH . 
D 4 HOH A 82 382 56 HOH HOH . 
D 4 HOH A 83 383 33 HOH HOH . 
D 4 HOH A 84 384 104 HOH HOH . 
D 4 HOH A 85 385 77 HOH HOH . 
D 4 HOH A 86 386 22 HOH HOH . 
D 4 HOH A 87 387 3 HOH HOH . 
D 4 HOH A 88 388 87 HOH HOH . 
D 4 HOH A 89 389 98 HOH HOH . 
D 4 HOH A 90 390 41 HOH HOH . 
D 4 HOH A 91 391 100 HOH HOH . 
D 4 HOH A 92 392 32 HOH HOH . 
D 4 HOH A 93 393 68 HOH HOH . 
D 4 HOH A 94 394 90 HOH HOH . 
D 4 HOH A 95 395 107 HOH HOH . 
D 4 HOH A 96 396 52 HOH HOH . 
D 4 HOH A 97 397 96 HOH HOH . 
D 4 HOH A 98 398 71 HOH HOH . 
D 4 HOH A 99 399 72 HOH HOH . 
D 4 HOH A 100 400 73 HOH HOH . 
D 4 HOH A 101 401 95 HOH HOH . 
D 4 HOH A 102 402 63 HOH HOH . 
D 4 HOH A 103 403 97 HOH HOH . 
D 4 HOH A 104 404 78 HOH HOH . 
D 4 HOH A 105 405 74 HOH HOH . 
D 4 HOH A 106 406 55 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OT1 . . . B 2 1.388 26.745 32.736 0.5 22.33 ? C1 OT1 201 A 1 
HETATM 2 C C2 OT1 . . . B 2 1.102 25.201 30.735 0.5 23.16 ? C2 OT1 201 A 1 
HETATM 3 C C3 OT1 . . . B 2 2.159 28.742 34.081 0.5 24.96 ? C3 OT1 201 A 1 
HETATM 4 C C4 OT1 . . . B 2 2.692 28.294 31.699 0.5 23.8 ? C4 OT1 201 A 1 
HETATM 5 C C5 OT1 . . . B 2 2.389 27.31 30.775 0.5 22.16 ? C5 OT1 201 A 1 
HETATM 6 C C6 OT1 . . . B 2 2.863 27.351 29.462 0.5 24.16 ? C6 OT1 201 A 1 
HETATM 7 C C7 OT1 . . . B 2 3.655 28.44 29.127 0.5 25.03 ? C7 OT1 201 A 1 
HETATM 8 C C8 OT1 . . . B 2 3.955 29.436 30.062 0.5 25.82 ? C8 OT1 201 A 1 
HETATM 9 C C9 OT1 . . . B 2 3.482 29.387 31.368 0.5 25.52 ? C9 OT1 201 A 1 
HETATM 10 C C10 OT1 . . . B 2 2.018 25.004 35.157 0.5 27.69 ? C10 OT1 201 A 1 
HETATM 11 C C11 OT1 . . . B 2 3.447 25.211 34.766 0.5 29.18 ? C11 OT1 201 A 1 
HETATM 12 C C12 OT1 . . . B 2 1.17 23.912 34.802 0.5 26.66 ? C12 OT1 201 A 1 
HETATM 13 C C13 OT1 . . . B 2 1.491 22.749 33.916 0.5 26.72 ? C13 OT1 201 A 1 
HETATM 14 C C14 OT1 . . . B 2 -0.045 24.075 35.584 0.5 27.22 ? C14 OT1 201 A 1 
HETATM 15 C C15 OT1 . . . B 2 -1.13 23.055 35.7 0.5 29.98 ? C15 OT1 201 A 1 
HETATM 16 C C16 OT1 . . . B 2 0.012 25.279 36.288 0.5 27.02 ? C16 OT1 201 A 1 
HETATM 17 C C17 OT1 . . . B 2 -1.048 25.838 37.184 0.5 29.16 ? C17 OT1 201 A 1 
HETATM 18 C C18 OT1 . . . B 2 1.29 25.877 36.029 0.5 27.64 ? C18 OT1 201 A 1 
HETATM 19 C C19 OT1 . . . B 2 1.822 27.069 36.763 0.5 29.48 ? C19 OT1 201 A 1 
HETATM 20 N N1 OT1 . . . B 2 1.597 26.384 31.43 0.5 22.72 ? N1 OT1 201 A 1 
HETATM 21 N N2 OT1 . . . B 2 2.06 27.923 32.885 0.5 23.98 ? N2 OT1 201 A 1 
HETATM 22 CL CL1 OT1 . . . B 2 -1.179 27.672 34.235 0.5 36.12 ? CL1 OT1 201 A 1 
HETATM 23 IR IR OT1 . . . B 2 0.273 25.757 34.15 0.5 24.96 ? IR OT1 201 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           375 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           23 
#