data_6PLE # _model_server_result.job_id HmXiaGapwKfd2mu-zUww1Q _model_server_result.datetime_utc '2025-01-25 08:26:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ple # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6PLE # _exptl.entry_id 6PLE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 582.646 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BILIVERDINE IX ALPHA' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PLE _cell.length_a 37.22 _cell.length_b 113.61 _cell.length_c 113.65 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PLE _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C33 H34 N4 O6' _chem_comp.formula_weight 582.646 _chem_comp.id BLA _chem_comp.mon_nstd_flag . _chem_comp.name 'BILIVERDINE IX ALPHA' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A BLA sing 70 n n CHA C4D BLA doub 71 z n CHA HHA BLA sing 72 n n NA C1A BLA sing 73 n y NA C4A BLA sing 74 n y NA HA BLA sing 75 n n C1A C2A BLA doub 76 n y C2A C3A BLA sing 77 n y C2A CAA BLA sing 78 n n C3A C4A BLA doub 79 n y C3A CMA BLA sing 80 n n C4A CHB BLA sing 81 n n CMA HMA1 BLA sing 82 n n CMA HMA2 BLA sing 83 n n CMA HMA3 BLA sing 84 n n CAA CBA BLA sing 85 n n CAA HAA1 BLA sing 86 n n CAA HAA2 BLA sing 87 n n CBA CGA BLA sing 88 n n CBA HBA1 BLA sing 89 n n CBA HBA2 BLA sing 90 n n CGA O1A BLA doub 91 n n CGA O2A BLA sing 92 n n O2A H2A BLA sing 93 n n CHB C1B BLA doub 94 z n CHB HHB BLA sing 95 n n NB C1B BLA sing 96 n n NB C4B BLA sing 97 n n NB HB BLA sing 98 n n C1B C2B BLA sing 99 n n C2B C3B BLA doub 100 n n C2B CMB BLA sing 101 n n C3B C4B BLA sing 102 n n C3B CAB BLA sing 103 n n C4B OB BLA doub 104 n n CMB HMB1 BLA sing 105 n n CMB HMB2 BLA sing 106 n n CMB HMB3 BLA sing 107 n n CAB CBB BLA doub 108 n n CAB HAB BLA sing 109 n n CBB HBB1 BLA sing 110 n n CBB HBB2 BLA sing 111 n n NC C1C BLA sing 112 n n NC C4C BLA sing 113 n n NC HC BLA sing 114 n n C1C C2C BLA sing 115 n n C1C OC BLA doub 116 n n C2C C3C BLA doub 117 n n C2C CMC BLA sing 118 n n C3C C4C BLA sing 119 n n C3C CAC BLA sing 120 n n C4C CHD BLA doub 121 z n CMC HMC1 BLA sing 122 n n CMC HMC2 BLA sing 123 n n CMC HMC3 BLA sing 124 n n CAC CBC BLA doub 125 n n CAC HAC BLA sing 126 n n CBC HBC1 BLA sing 127 n n CBC HBC2 BLA sing 128 n n CHD C1D BLA sing 129 n n CHD HHD BLA sing 130 n n ND C1D BLA doub 131 n n ND C4D BLA sing 132 n n C1D C2D BLA sing 133 n n C2D C3D BLA doub 134 n n C2D CMD BLA sing 135 n n C3D C4D BLA sing 136 n n C3D CAD BLA sing 137 n n CMD HMD1 BLA sing 138 n n CMD HMD2 BLA sing 139 n n CMD HMD3 BLA sing 140 n n CAD CBD BLA sing 141 n n CAD HAD1 BLA sing 142 n n CAD HAD2 BLA sing 143 n n CBD CGD BLA sing 144 n n CBD HBD1 BLA sing 145 n n CBD HBD2 BLA sing 146 n n CGD O1D BLA doub 147 n n CGD O2D BLA sing 148 n n O2D H2D BLA sing 149 n n # _atom_sites.entry_id 6PLE _atom_sites.fract_transf_matrix[1][1] 0.026867 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008802 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008799 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BLA A 1 301 301 BLA BLA . D 2 BLA A 1 302 302 BLA BLA . E 2 BLA B 1 201 303 BLA BLA . F 2 BLA B 1 202 304 BLA BLA . G 2 BLA B 1 203 305 BLA BLA . H 3 HOH A 1 401 6 HOH HOH . H 3 HOH A 2 402 2 HOH HOH . H 3 HOH A 3 403 15 HOH HOH . H 3 HOH A 4 404 11 HOH HOH . H 3 HOH A 5 405 13 HOH HOH . H 3 HOH A 6 406 12 HOH HOH . H 3 HOH A 7 407 3 HOH HOH . H 3 HOH A 8 408 5 HOH HOH . I 3 HOH B 1 301 9 HOH HOH . I 3 HOH B 2 302 1 HOH HOH . I 3 HOH B 3 303 16 HOH HOH . I 3 HOH B 4 304 4 HOH HOH . I 3 HOH B 5 305 10 HOH HOH . I 3 HOH B 6 306 8 HOH HOH . I 3 HOH B 7 307 7 HOH HOH . I 3 HOH B 8 308 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA BLA . . . C 2 -11.612 -14.609 -27.613 1 41.61 ? CHA BLA 301 A 1 HETATM 2 N NA BLA . . . C 2 -13.327 -14.364 -29.516 1 32.66 ? NA BLA 301 A 1 HETATM 3 C C1A BLA . . . C 2 -12.087 -14.638 -29.073 1 37.33 ? C1A BLA 301 A 1 HETATM 4 C C2A BLA . . . C 2 -11.288 -14.937 -30.126 1 37.56 ? C2A BLA 301 A 1 HETATM 5 C C3A BLA . . . C 2 -12.056 -14.847 -31.249 1 35.12 ? C3A BLA 301 A 1 HETATM 6 C C4A BLA . . . C 2 -13.337 -14.489 -30.857 1 27.07 ? C4A BLA 301 A 1 HETATM 7 C CMA BLA . . . C 2 -11.581 -15.081 -32.678 1 41.44 ? CMA BLA 301 A 1 HETATM 8 C CAA BLA . . . C 2 -9.81 -15.285 -29.926 1 38.25 ? CAA BLA 301 A 1 HETATM 9 C CBA BLA . . . C 2 -9.617 -16.803 -29.76 1 40.59 ? CBA BLA 301 A 1 HETATM 10 C CGA BLA . . . C 2 -9.469 -17.195 -28.286 1 46.17 ? CGA BLA 301 A 1 HETATM 11 O O1A BLA . . . C 2 -8.614 -16.671 -27.526 1 42.74 ? O1A BLA 301 A 1 HETATM 12 O O2A BLA . . . C 2 -10.215 -18.084 -27.822 1 48.84 ? O2A BLA 301 A 1 HETATM 13 C CHB BLA . . . C 2 -14.62 -14.231 -31.693 1 31.18 ? CHB BLA 301 A 1 HETATM 14 N NB BLA . . . C 2 -15.559 -12.999 -29.639 1 31.65 ? NB BLA 301 A 1 HETATM 15 C C1B BLA . . . C 2 -15.599 -13.525 -31.092 1 33.4 ? C1B BLA 301 A 1 HETATM 16 C C2B BLA . . . C 2 -16.924 -13.08 -31.631 1 35.12 ? C2B BLA 301 A 1 HETATM 17 C C3B BLA . . . C 2 -17.628 -12.359 -30.622 1 28.81 ? C3B BLA 301 A 1 HETATM 18 C C4B BLA . . . C 2 -16.854 -12.266 -29.35 1 31.24 ? C4B BLA 301 A 1 HETATM 19 C CMB BLA . . . C 2 -17.461 -13.348 -33.049 1 33.71 ? CMB BLA 301 A 1 HETATM 20 O OB BLA . . . C 2 -17.163 -11.753 -28.334 1 29.68 ? OB BLA 301 A 1 HETATM 21 C CAB BLA . . . C 2 -19.011 -11.749 -30.778 1 34.74 ? CAB BLA 301 A 1 HETATM 22 C CBB BLA . . . C 2 -20.066 -12.537 -30.84 1 38.08 ? CBB BLA 301 A 1 HETATM 23 N NC BLA . . . C 2 -16.822 -14.972 -27.467 1 34.7 ? NC BLA 301 A 1 HETATM 24 C C1C BLA . . . C 2 -18.236 -14.912 -28.083 1 36.05 ? C1C BLA 301 A 1 HETATM 25 C C2C BLA . . . C 2 -19.164 -14.513 -26.985 1 29.16 ? C2C BLA 301 A 1 HETATM 26 C C3C BLA . . . C 2 -18.433 -14.326 -25.772 1 38.02 ? C3C BLA 301 A 1 HETATM 27 C C4C BLA . . . C 2 -16.981 -14.602 -25.983 1 34.75 ? C4C BLA 301 A 1 HETATM 28 C CMC BLA . . . C 2 -20.674 -14.335 -27.161 1 34.22 ? CMC BLA 301 A 1 HETATM 29 O OC BLA . . . C 2 -18.525 -15.142 -29.208 1 44.63 ? OC BLA 301 A 1 HETATM 30 C CAC BLA . . . C 2 -18.965 -13.917 -24.392 1 33.43 ? CAC BLA 301 A 1 HETATM 31 C CBC BLA . . . C 2 -19.579 -12.779 -24.196 1 33.21 ? CBC BLA 301 A 1 HETATM 32 C CHD BLA . . . C 2 -16.062 -14.483 -25.033 1 32.3 ? CHD BLA 301 A 1 HETATM 33 N ND BLA . . . C 2 -14.034 -14.554 -26.758 1 33.35 ? ND BLA 301 A 1 HETATM 34 C C1D BLA . . . C 2 -14.567 -14.485 -25.382 1 29.76 ? C1D BLA 301 A 1 HETATM 35 C C2D BLA . . . C 2 -13.448 -14.462 -24.393 1 34.37 ? C2D BLA 301 A 1 HETATM 36 C C3D BLA . . . C 2 -12.202 -14.494 -25.176 1 30.96 ? C3D BLA 301 A 1 HETATM 37 C C4D BLA . . . C 2 -12.531 -14.554 -26.643 1 34.74 ? C4D BLA 301 A 1 HETATM 38 C CMD BLA . . . C 2 -13.567 -14.401 -22.86 1 34.14 ? CMD BLA 301 A 1 HETATM 39 C CAD BLA . . . C 2 -10.763 -14.521 -24.689 1 39.34 ? CAD BLA 301 A 1 HETATM 40 C CBD BLA . . . C 2 -10.351 -15.984 -24.888 1 41.89 ? CBD BLA 301 A 1 HETATM 41 C CGD BLA . . . C 2 -8.991 -16.255 -24.263 1 46.3 ? CGD BLA 301 A 1 HETATM 42 O O1D BLA . . . C 2 -8.813 -16.033 -23.042 1 52.7 ? O1D BLA 301 A 1 HETATM 43 O O2D BLA . . . C 2 -8.058 -16.709 -24.974 1 46.68 ? O2D BLA 301 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #