data_6PLF # _model_server_result.job_id SbqRXsd62wh-te-NjeY6cA _model_server_result.datetime_utc '2024-11-15 02:00:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6plf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":403}' # _entry.id 6PLF # _exptl.entry_id 6PLF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.76 _cell.angle_gamma 90 _cell.entry_id 6PLF _cell.length_a 43.202 _cell.length_b 126.192 _cell.length_c 59.504 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PLF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 H N N ? 3 I N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6PLF _atom_sites.fract_transf_matrix[1][1] 0.023147 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003983 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007924 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017053 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ONV A 1 401 401 ONV 304 . D 3 EDO A 1 402 2 EDO EDO . E 3 EDO A 1 403 3 EDO EDO . F 3 EDO A 1 404 4 EDO EDO . G 2 ONV B 1 401 401 ONV 304 . H 3 EDO B 1 402 1 EDO EDO . I 3 EDO B 1 403 5 EDO EDO . J 4 HOH A 1 501 68 HOH HOH . J 4 HOH A 2 502 119 HOH HOH . J 4 HOH A 3 503 105 HOH HOH . J 4 HOH A 4 504 100 HOH HOH . J 4 HOH A 5 505 251 HOH HOH . J 4 HOH A 6 506 79 HOH HOH . J 4 HOH A 7 507 237 HOH HOH . J 4 HOH A 8 508 50 HOH HOH . J 4 HOH A 9 509 47 HOH HOH . J 4 HOH A 10 510 257 HOH HOH . J 4 HOH A 11 511 205 HOH HOH . J 4 HOH A 12 512 81 HOH HOH . J 4 HOH A 13 513 157 HOH HOH . J 4 HOH A 14 514 91 HOH HOH . J 4 HOH A 15 515 210 HOH HOH . J 4 HOH A 16 516 217 HOH HOH . J 4 HOH A 17 517 117 HOH HOH . J 4 HOH A 18 518 7 HOH HOH . J 4 HOH A 19 519 4 HOH HOH . J 4 HOH A 20 520 39 HOH HOH . J 4 HOH A 21 521 20 HOH HOH . J 4 HOH A 22 522 242 HOH HOH . J 4 HOH A 23 523 243 HOH HOH . J 4 HOH A 24 524 25 HOH HOH . J 4 HOH A 25 525 176 HOH HOH . J 4 HOH A 26 526 55 HOH HOH . J 4 HOH A 27 527 10 HOH HOH . J 4 HOH A 28 528 85 HOH HOH . J 4 HOH A 29 529 44 HOH HOH . J 4 HOH A 30 530 143 HOH HOH . J 4 HOH A 31 531 201 HOH HOH . J 4 HOH A 32 532 93 HOH HOH . J 4 HOH A 33 533 247 HOH HOH . J 4 HOH A 34 534 76 HOH HOH . J 4 HOH A 35 535 265 HOH HOH . J 4 HOH A 36 536 173 HOH HOH . J 4 HOH A 37 537 101 HOH HOH . J 4 HOH A 38 538 221 HOH HOH . J 4 HOH A 39 539 58 HOH HOH . J 4 HOH A 40 540 239 HOH HOH . J 4 HOH A 41 541 135 HOH HOH . J 4 HOH A 42 542 78 HOH HOH . J 4 HOH A 43 543 16 HOH HOH . J 4 HOH A 44 544 178 HOH HOH . J 4 HOH A 45 545 121 HOH HOH . J 4 HOH A 46 546 67 HOH HOH . J 4 HOH A 47 547 73 HOH HOH . J 4 HOH A 48 548 189 HOH HOH . J 4 HOH A 49 549 37 HOH HOH . J 4 HOH A 50 550 246 HOH HOH . J 4 HOH A 51 551 1 HOH HOH . J 4 HOH A 52 552 27 HOH HOH . J 4 HOH A 53 553 96 HOH HOH . J 4 HOH A 54 554 99 HOH HOH . J 4 HOH A 55 555 123 HOH HOH . J 4 HOH A 56 556 106 HOH HOH . J 4 HOH A 57 557 136 HOH HOH . J 4 HOH A 58 558 40 HOH HOH . J 4 HOH A 59 559 141 HOH HOH . J 4 HOH A 60 560 32 HOH HOH . J 4 HOH A 61 561 31 HOH HOH . J 4 HOH A 62 562 48 HOH HOH . J 4 HOH A 63 563 219 HOH HOH . J 4 HOH A 64 564 18 HOH HOH . J 4 HOH A 65 565 255 HOH HOH . J 4 HOH A 66 566 82 HOH HOH . J 4 HOH A 67 567 23 HOH HOH . J 4 HOH A 68 568 177 HOH HOH . J 4 HOH A 69 569 199 HOH HOH . J 4 HOH A 70 570 145 HOH HOH . J 4 HOH A 71 571 131 HOH HOH . J 4 HOH A 72 572 188 HOH HOH . J 4 HOH A 73 573 15 HOH HOH . J 4 HOH A 74 574 164 HOH HOH . J 4 HOH A 75 575 266 HOH HOH . J 4 HOH A 76 576 115 HOH HOH . J 4 HOH A 77 577 162 HOH HOH . J 4 HOH A 78 578 8 HOH HOH . J 4 HOH A 79 579 118 HOH HOH . J 4 HOH A 80 580 222 HOH HOH . J 4 HOH A 81 581 252 HOH HOH . J 4 HOH A 82 582 133 HOH HOH . J 4 HOH A 83 583 57 HOH HOH . J 4 HOH A 84 584 46 HOH HOH . J 4 HOH A 85 585 70 HOH HOH . J 4 HOH A 86 586 261 HOH HOH . J 4 HOH A 87 587 220 HOH HOH . J 4 HOH A 88 588 13 HOH HOH . J 4 HOH A 89 589 54 HOH HOH . J 4 HOH A 90 590 42 HOH HOH . J 4 HOH A 91 591 140 HOH HOH . J 4 HOH A 92 592 184 HOH HOH . J 4 HOH A 93 593 111 HOH HOH . J 4 HOH A 94 594 175 HOH HOH . J 4 HOH A 95 595 75 HOH HOH . J 4 HOH A 96 596 142 HOH HOH . J 4 HOH A 97 597 102 HOH HOH . J 4 HOH A 98 598 14 HOH HOH . J 4 HOH A 99 599 92 HOH HOH . J 4 HOH A 100 600 194 HOH HOH . J 4 HOH A 101 601 267 HOH HOH . J 4 HOH A 102 602 276 HOH HOH . J 4 HOH A 103 603 166 HOH HOH . J 4 HOH A 104 604 125 HOH HOH . J 4 HOH A 105 605 258 HOH HOH . J 4 HOH A 106 606 200 HOH HOH . J 4 HOH A 107 607 202 HOH HOH . J 4 HOH A 108 608 161 HOH HOH . J 4 HOH A 109 609 122 HOH HOH . J 4 HOH A 110 610 229 HOH HOH . J 4 HOH A 111 611 280 HOH HOH . J 4 HOH A 112 612 244 HOH HOH . J 4 HOH A 113 613 41 HOH HOH . J 4 HOH A 114 614 238 HOH HOH . J 4 HOH A 115 615 207 HOH HOH . J 4 HOH A 116 616 231 HOH HOH . J 4 HOH A 117 617 225 HOH HOH . J 4 HOH A 118 618 28 HOH HOH . J 4 HOH A 119 619 234 HOH HOH . J 4 HOH A 120 620 158 HOH HOH . J 4 HOH A 121 621 49 HOH HOH . J 4 HOH A 122 622 233 HOH HOH . J 4 HOH A 123 623 213 HOH HOH . J 4 HOH A 124 624 144 HOH HOH . J 4 HOH A 125 625 193 HOH HOH . J 4 HOH A 126 626 192 HOH HOH . J 4 HOH A 127 627 196 HOH HOH . J 4 HOH A 128 628 241 HOH HOH . J 4 HOH A 129 629 120 HOH HOH . J 4 HOH A 130 630 137 HOH HOH . J 4 HOH A 131 631 53 HOH HOH . J 4 HOH A 132 632 253 HOH HOH . J 4 HOH A 133 633 43 HOH HOH . J 4 HOH A 134 634 174 HOH HOH . J 4 HOH A 135 635 256 HOH HOH . J 4 HOH A 136 636 262 HOH HOH . J 4 HOH A 137 637 245 HOH HOH . J 4 HOH A 138 638 185 HOH HOH . K 4 HOH B 1 501 63 HOH HOH . K 4 HOH B 2 502 268 HOH HOH . K 4 HOH B 3 503 186 HOH HOH . K 4 HOH B 4 504 17 HOH HOH . K 4 HOH B 5 505 103 HOH HOH . K 4 HOH B 6 506 62 HOH HOH . K 4 HOH B 7 507 69 HOH HOH . K 4 HOH B 8 508 236 HOH HOH . K 4 HOH B 9 509 146 HOH HOH . K 4 HOH B 10 510 260 HOH HOH . K 4 HOH B 11 511 77 HOH HOH . K 4 HOH B 12 512 271 HOH HOH . K 4 HOH B 13 513 80 HOH HOH . K 4 HOH B 14 514 163 HOH HOH . K 4 HOH B 15 515 206 HOH HOH . K 4 HOH B 16 516 95 HOH HOH . K 4 HOH B 17 517 61 HOH HOH . K 4 HOH B 18 518 168 HOH HOH . K 4 HOH B 19 519 172 HOH HOH . K 4 HOH B 20 520 151 HOH HOH . K 4 HOH B 21 521 74 HOH HOH . K 4 HOH B 22 522 264 HOH HOH . K 4 HOH B 23 523 45 HOH HOH . K 4 HOH B 24 524 36 HOH HOH . K 4 HOH B 25 525 64 HOH HOH . K 4 HOH B 26 526 160 HOH HOH . K 4 HOH B 27 527 126 HOH HOH . K 4 HOH B 28 528 109 HOH HOH . K 4 HOH B 29 529 190 HOH HOH . K 4 HOH B 30 530 230 HOH HOH . K 4 HOH B 31 531 270 HOH HOH . K 4 HOH B 32 532 30 HOH HOH . K 4 HOH B 33 533 84 HOH HOH . K 4 HOH B 34 534 2 HOH HOH . K 4 HOH B 35 535 156 HOH HOH . K 4 HOH B 36 536 60 HOH HOH . K 4 HOH B 37 537 134 HOH HOH . K 4 HOH B 38 538 88 HOH HOH . K 4 HOH B 39 539 26 HOH HOH . K 4 HOH B 40 540 150 HOH HOH . K 4 HOH B 41 541 22 HOH HOH . K 4 HOH B 42 542 180 HOH HOH . K 4 HOH B 43 543 19 HOH HOH . K 4 HOH B 44 544 83 HOH HOH . K 4 HOH B 45 545 86 HOH HOH . K 4 HOH B 46 546 226 HOH HOH . K 4 HOH B 47 547 149 HOH HOH . K 4 HOH B 48 548 218 HOH HOH . K 4 HOH B 49 549 3 HOH HOH . K 4 HOH B 50 550 198 HOH HOH . K 4 HOH B 51 551 9 HOH HOH . K 4 HOH B 52 552 215 HOH HOH . K 4 HOH B 53 553 38 HOH HOH . K 4 HOH B 54 554 34 HOH HOH . K 4 HOH B 55 555 5 HOH HOH . K 4 HOH B 56 556 208 HOH HOH . K 4 HOH B 57 557 11 HOH HOH . K 4 HOH B 58 558 281 HOH HOH . K 4 HOH B 59 559 275 HOH HOH . K 4 HOH B 60 560 179 HOH HOH . K 4 HOH B 61 561 52 HOH HOH . K 4 HOH B 62 562 138 HOH HOH . K 4 HOH B 63 563 263 HOH HOH . K 4 HOH B 64 564 29 HOH HOH . K 4 HOH B 65 565 66 HOH HOH . K 4 HOH B 66 566 89 HOH HOH . K 4 HOH B 67 567 12 HOH HOH . K 4 HOH B 68 568 254 HOH HOH . K 4 HOH B 69 569 197 HOH HOH . K 4 HOH B 70 570 249 HOH HOH . K 4 HOH B 71 571 235 HOH HOH . K 4 HOH B 72 572 128 HOH HOH . K 4 HOH B 73 573 223 HOH HOH . K 4 HOH B 74 574 165 HOH HOH . K 4 HOH B 75 575 147 HOH HOH . K 4 HOH B 76 576 33 HOH HOH . K 4 HOH B 77 577 104 HOH HOH . K 4 HOH B 78 578 250 HOH HOH . K 4 HOH B 79 579 110 HOH HOH . K 4 HOH B 80 580 56 HOH HOH . K 4 HOH B 81 581 87 HOH HOH . K 4 HOH B 82 582 278 HOH HOH . K 4 HOH B 83 583 148 HOH HOH . K 4 HOH B 84 584 277 HOH HOH . K 4 HOH B 85 585 112 HOH HOH . K 4 HOH B 86 586 59 HOH HOH . K 4 HOH B 87 587 182 HOH HOH . K 4 HOH B 88 588 181 HOH HOH . K 4 HOH B 89 589 108 HOH HOH . K 4 HOH B 90 590 274 HOH HOH . K 4 HOH B 91 591 129 HOH HOH . K 4 HOH B 92 592 159 HOH HOH . K 4 HOH B 93 593 273 HOH HOH . K 4 HOH B 94 594 94 HOH HOH . K 4 HOH B 95 595 107 HOH HOH . K 4 HOH B 96 596 203 HOH HOH . K 4 HOH B 97 597 171 HOH HOH . K 4 HOH B 98 598 152 HOH HOH . K 4 HOH B 99 599 170 HOH HOH . K 4 HOH B 100 600 154 HOH HOH . K 4 HOH B 101 601 113 HOH HOH . K 4 HOH B 102 602 35 HOH HOH . K 4 HOH B 103 603 6 HOH HOH . K 4 HOH B 104 604 97 HOH HOH . K 4 HOH B 105 605 209 HOH HOH . K 4 HOH B 106 606 195 HOH HOH . K 4 HOH B 107 607 191 HOH HOH . K 4 HOH B 108 608 127 HOH HOH . K 4 HOH B 109 609 216 HOH HOH . K 4 HOH B 110 610 116 HOH HOH . K 4 HOH B 111 611 114 HOH HOH . K 4 HOH B 112 612 132 HOH HOH . K 4 HOH B 113 613 167 HOH HOH . K 4 HOH B 114 614 98 HOH HOH . K 4 HOH B 115 615 130 HOH HOH . K 4 HOH B 116 616 153 HOH HOH . K 4 HOH B 117 617 227 HOH HOH . K 4 HOH B 118 618 183 HOH HOH . K 4 HOH B 119 619 272 HOH HOH . K 4 HOH B 120 620 187 HOH HOH . K 4 HOH B 121 621 90 HOH HOH . K 4 HOH B 122 622 124 HOH HOH . K 4 HOH B 123 623 269 HOH HOH . K 4 HOH B 124 624 211 HOH HOH . K 4 HOH B 125 625 228 HOH HOH . K 4 HOH B 126 626 214 HOH HOH . K 4 HOH B 127 627 51 HOH HOH . K 4 HOH B 128 628 282 HOH HOH . K 4 HOH B 129 629 21 HOH HOH . K 4 HOH B 130 630 232 HOH HOH . K 4 HOH B 131 631 279 HOH HOH . K 4 HOH B 132 632 65 HOH HOH . K 4 HOH B 133 633 240 HOH HOH . K 4 HOH B 134 634 212 HOH HOH . K 4 HOH B 135 635 248 HOH HOH . K 4 HOH B 136 636 24 HOH HOH . K 4 HOH B 137 637 224 HOH HOH . K 4 HOH B 138 638 283 HOH HOH . K 4 HOH B 139 639 71 HOH HOH . K 4 HOH B 140 640 155 HOH HOH . K 4 HOH B 141 641 169 HOH HOH . K 4 HOH B 142 642 204 HOH HOH . K 4 HOH B 143 643 139 HOH HOH . K 4 HOH B 144 644 72 HOH HOH . K 4 HOH B 145 645 259 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 3 -2.91 21.056 21.064 1 40.77 ? C1 EDO 403 B 1 HETATM 2 O O1 EDO . . . I 3 -3.828 20.077 21.577 1 41.44 ? O1 EDO 403 B 1 HETATM 3 C C2 EDO . . . I 3 -2.634 22.167 22.003 1 39.8 ? C2 EDO 403 B 1 HETATM 4 O O2 EDO . . . I 3 -3.28 23.389 21.676 1 52.93 ? O2 EDO 403 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #