data_6PLG # _model_server_result.job_id 8AqUW7zEAdgCtdUILa5Zkg _model_server_result.datetime_utc '2024-11-23 05:08:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6plg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":402}' # _entry.id 6PLG # _exptl.entry_id 6PLG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 134.087 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MALATE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 105.98 _cell.angle_beta 96.2 _cell.angle_gamma 101.42 _cell.entry_id 6PLG _cell.length_a 44.649 _cell.length_b 112.699 _cell.length_c 137.84 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PLG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I,M,N 1 1 B,F,J,O,P 2 1 C,G,K,Q,R 3 1 D,H,L,S,T 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 N N N ? 3 P N N ? 3 R N N ? 3 T N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 115 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 116 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 115 _struct_conn.ptnr2_auth_asym_id E _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 116 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.99 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C4 H6 O5' _chem_comp.formula_weight 134.087 _chem_comp.id MLT _chem_comp.mon_nstd_flag . _chem_comp.name D-MALATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-HYDROXYBUTANEDIOIC ACID;2-HYDROXY-SUCCINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MLT doub 235 n n C1 O2 MLT sing 236 n n C1 C2 MLT sing 237 n n C2 O3 MLT sing 238 n n C2 C3 MLT sing 239 n n C2 H2 MLT sing 240 n n O3 HO3 MLT sing 241 n n C3 C4 MLT sing 242 n n C3 H31 MLT sing 243 n n C3 H32 MLT sing 244 n n C4 O4 MLT doub 245 n n C4 O5 MLT sing 246 n n O5 HO5 MLT sing 247 n n O2 H6 MLT sing 248 n n # _atom_sites.entry_id 6PLG _atom_sites.fract_transf_matrix[1][1] 0.022397 _atom_sites.fract_transf_matrix[1][2] 0.004524 _atom_sites.fract_transf_matrix[1][3] 0.004 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009052 _atom_sites.fract_transf_matrix[2][3] 0.002893 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007661 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 ONS A 1 401 401 ONS t45 . J 2 ONS B 1 401 401 ONS t45 . K 2 ONS C 1 401 401 ONS t45 . L 2 ONS D 1 401 401 ONS t45 . M 2 ONS E 1 401 401 ONS t45 . N 3 MLT E 1 402 503 MLT MLT . O 2 ONS F 1 401 401 ONS t45 . P 3 MLT F 1 402 503 MLT MLT . Q 2 ONS G 1 401 401 ONS t45 . R 3 MLT G 1 402 501 MLT MLT . S 2 ONS H 1 401 401 ONS t45 . T 3 MLT H 1 402 503 MLT MLT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLT . . . R 3 -13.155 59.38 -13.944 1 85.39 ? C1 MLT 402 G 1 HETATM 2 O O1 MLT . . . R 3 -14.217 58.772 -14.227 1 96.35 ? O1 MLT 402 G 1 HETATM 3 O O2 MLT . . . R 3 -12.74 59.507 -12.759 1 85.56 ? O2 MLT 402 G 1 HETATM 4 C C2 MLT . . . R 3 -12.345 59.984 -15.062 1 77.46 ? C2 MLT 402 G 1 HETATM 5 O O3 MLT . . . R 3 -12.774 59.539 -16.355 1 84.06 ? O3 MLT 402 G 1 HETATM 6 C C3 MLT . . . R 3 -10.913 59.568 -14.854 1 73.71 ? C3 MLT 402 G 1 HETATM 7 C C4 MLT . . . R 3 -10.207 60.623 -14.078 1 73.18 ? C4 MLT 402 G 1 HETATM 8 O O4 MLT . . . R 3 -9.213 61.147 -14.617 1 78.05 ? O4 MLT 402 G 1 HETATM 9 O O5 MLT . . . R 3 -10.642 60.9 -12.941 1 69.12 ? O5 MLT 402 G 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 9 #