data_6PLM
#
_model_server_result.job_id            saETe5H8EdjNk3ItCl5XMQ 
_model_server_result.datetime_utc      '2025-04-19 12:44:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6plm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1002}' 
#
_entry.id    6PLM 
#
_exptl.entry_id    6PLM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.69 
_cell.angle_gamma         90 
_cell.entry_id            6PLM 
_cell.length_a            105.351 
_cell.length_b            103.792 
_cell.length_c            110.194 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PLM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,M,O,Q 1 1 
B,D,I,J,K,L,N,P,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 I N N 
? 3 J N N 
? 3 M N N 
? 3 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 438 A ASN 534 1_555 F CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc2 A OD1 ASP 446 A ASP 542 1_555 E CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? 
metalc ? metalc3 A OD2 ASP 446 A ASP 542 1_555 E CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? 
metalc ? metalc4 A OD2 ASP 446 A ASP 542 1_555 F CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? 
metalc ? metalc5 A OD2 ASP 449 A ASP 545 1_555 E CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc6 E CA CA . A CA 1001 1_555 G O5 POP . A POP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc7 F CA CA . A CA 1002 1_555 G O2 POP . A POP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc8 F CA CA . A CA 1002 1_555 G O6 POP . A POP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc9 B OD1 ASN 438 B ASN 534 1_555 J CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? 
metalc ? metalc10 B OD1 ASP 446 B ASP 542 1_555 I CA CA . B CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
metalc ? metalc11 B OD2 ASP 446 B ASP 542 1_555 I CA CA . B CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
metalc ? metalc12 B OD2 ASP 446 B ASP 542 1_555 J CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? 
metalc ? metalc13 B OD2 ASP 449 B ASP 545 1_555 I CA CA . B CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc14 I CA CA . B CA 1001 1_555 K O3 POP . B POP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc15 J CA CA . B CA 1002 1_555 K O2 POP . B POP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc16 J CA CA . B CA 1002 1_555 K O4 POP . B POP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc17 C OD1 ASP 20 C ASP 20 1_555 M CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? 
metalc ? metalc18 C OD1 ASP 22 C ASP 22 1_555 M CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? 
metalc ? metalc19 C OD1 ASP 24 C ASP 24 1_555 M CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? 
metalc ? metalc20 C O THR 26 C THR 26 1_555 M CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc21 D OD1 ASP 20 D ASP 20 1_555 N CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? 
metalc ? metalc22 D OD1 ASP 22 D ASP 22 1_555 N CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? 
metalc ? metalc23 D OD1 ASP 24 D ASP 24 1_555 N CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? 
metalc ? metalc24 D O THR 26 D THR 26 1_555 N CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc25 N CA CA . D CA 201 1_555 R O HOH . D HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6PLM 
_atom_sites.fract_transf_matrix[1][1]    0.009492 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002489 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009635 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009382 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 CA A 1 1001 1001 CA CA . 
F 3 CA A 1 1002 1002 CA CA . 
G 4 POP A 1 1003 1101 POP POP . 
H 5 AMP A 1 1004 1201 AMP AMP . 
I 3 CA B 1 1001 1001 CA CA . 
J 3 CA B 1 1002 1002 CA CA . 
K 4 POP B 1 1003 1101 POP POP . 
L 5 AMP B 1 1004 1201 AMP AMP . 
M 3 CA C 1 201 201 CA CA . 
N 3 CA D 1 201 201 CA CA . 
O 6 HOH A 1 1101 13 HOH HOH . 
O 6 HOH A 2 1102 48 HOH HOH . 
O 6 HOH A 3 1103 33 HOH HOH . 
O 6 HOH A 4 1104 7 HOH HOH . 
O 6 HOH A 5 1105 131 HOH HOH . 
O 6 HOH A 6 1106 51 HOH HOH . 
O 6 HOH A 7 1107 22 HOH HOH . 
O 6 HOH A 8 1108 39 HOH HOH . 
O 6 HOH A 9 1109 18 HOH HOH . 
O 6 HOH A 10 1110 37 HOH HOH . 
O 6 HOH A 11 1111 6 HOH HOH . 
O 6 HOH A 12 1112 20 HOH HOH . 
O 6 HOH A 13 1113 21 HOH HOH . 
O 6 HOH A 14 1114 57 HOH HOH . 
O 6 HOH A 15 1115 62 HOH HOH . 
O 6 HOH A 16 1116 1 HOH HOH . 
O 6 HOH A 17 1117 139 HOH HOH . 
O 6 HOH A 18 1118 14 HOH HOH . 
O 6 HOH A 19 1119 3 HOH HOH . 
O 6 HOH A 20 1120 23 HOH HOH . 
O 6 HOH A 21 1121 54 HOH HOH . 
O 6 HOH A 22 1122 27 HOH HOH . 
O 6 HOH A 23 1123 30 HOH HOH . 
O 6 HOH A 24 1124 12 HOH HOH . 
O 6 HOH A 25 1125 38 HOH HOH . 
O 6 HOH A 26 1126 49 HOH HOH . 
O 6 HOH A 27 1127 50 HOH HOH . 
O 6 HOH A 28 1128 36 HOH HOH . 
O 6 HOH A 29 1129 46 HOH HOH . 
O 6 HOH A 30 1130 136 HOH HOH . 
O 6 HOH A 31 1131 45 HOH HOH . 
O 6 HOH A 32 1132 60 HOH HOH . 
O 6 HOH A 33 1133 58 HOH HOH . 
O 6 HOH A 34 1134 4 HOH HOH . 
O 6 HOH A 35 1135 8 HOH HOH . 
O 6 HOH A 36 1136 40 HOH HOH . 
O 6 HOH A 37 1137 137 HOH HOH . 
O 6 HOH A 38 1138 35 HOH HOH . 
O 6 HOH A 39 1139 129 HOH HOH . 
O 6 HOH A 40 1140 16 HOH HOH . 
O 6 HOH A 41 1141 17 HOH HOH . 
O 6 HOH A 42 1142 44 HOH HOH . 
O 6 HOH A 43 1143 34 HOH HOH . 
O 6 HOH A 44 1144 143 HOH HOH . 
O 6 HOH A 45 1145 31 HOH HOH . 
O 6 HOH A 46 1146 25 HOH HOH . 
O 6 HOH A 47 1147 138 HOH HOH . 
O 6 HOH A 48 1148 145 HOH HOH . 
O 6 HOH A 49 1149 61 HOH HOH . 
O 6 HOH A 50 1150 132 HOH HOH . 
O 6 HOH A 51 1151 11 HOH HOH . 
O 6 HOH A 52 1152 9 HOH HOH . 
O 6 HOH A 53 1153 59 HOH HOH . 
O 6 HOH A 54 1154 32 HOH HOH . 
O 6 HOH A 55 1155 10 HOH HOH . 
O 6 HOH A 56 1156 26 HOH HOH . 
O 6 HOH A 57 1157 146 HOH HOH . 
O 6 HOH A 58 1158 15 HOH HOH . 
O 6 HOH A 59 1159 2 HOH HOH . 
O 6 HOH A 60 1160 53 HOH HOH . 
O 6 HOH A 61 1161 52 HOH HOH . 
O 6 HOH A 62 1162 43 HOH HOH . 
O 6 HOH A 63 1163 130 HOH HOH . 
O 6 HOH A 64 1164 135 HOH HOH . 
O 6 HOH A 65 1165 55 HOH HOH . 
O 6 HOH A 66 1166 24 HOH HOH . 
O 6 HOH A 67 1167 56 HOH HOH . 
O 6 HOH A 68 1168 47 HOH HOH . 
O 6 HOH A 69 1169 133 HOH HOH . 
O 6 HOH A 70 1170 29 HOH HOH . 
O 6 HOH A 71 1171 5 HOH HOH . 
O 6 HOH A 72 1172 149 HOH HOH . 
O 6 HOH A 73 1173 144 HOH HOH . 
O 6 HOH A 74 1174 19 HOH HOH . 
O 6 HOH A 75 1175 41 HOH HOH . 
O 6 HOH A 76 1176 142 HOH HOH . 
O 6 HOH A 77 1177 28 HOH HOH . 
O 6 HOH A 78 1178 42 HOH HOH . 
O 6 HOH A 79 1179 148 HOH HOH . 
O 6 HOH A 80 1180 141 HOH HOH . 
P 6 HOH B 1 1101 71 HOH HOH . 
P 6 HOH B 2 1102 75 HOH HOH . 
P 6 HOH B 3 1103 64 HOH HOH . 
P 6 HOH B 4 1104 80 HOH HOH . 
P 6 HOH B 5 1105 68 HOH HOH . 
P 6 HOH B 6 1106 79 HOH HOH . 
P 6 HOH B 7 1107 97 HOH HOH . 
P 6 HOH B 8 1108 93 HOH HOH . 
P 6 HOH B 9 1109 108 HOH HOH . 
P 6 HOH B 10 1110 88 HOH HOH . 
P 6 HOH B 11 1111 77 HOH HOH . 
P 6 HOH B 12 1112 119 HOH HOH . 
P 6 HOH B 13 1113 158 HOH HOH . 
P 6 HOH B 14 1114 126 HOH HOH . 
P 6 HOH B 15 1115 65 HOH HOH . 
P 6 HOH B 16 1116 98 HOH HOH . 
P 6 HOH B 17 1117 72 HOH HOH . 
P 6 HOH B 18 1118 116 HOH HOH . 
P 6 HOH B 19 1119 122 HOH HOH . 
P 6 HOH B 20 1120 157 HOH HOH . 
P 6 HOH B 21 1121 82 HOH HOH . 
P 6 HOH B 22 1122 127 HOH HOH . 
P 6 HOH B 23 1123 109 HOH HOH . 
P 6 HOH B 24 1124 89 HOH HOH . 
P 6 HOH B 25 1125 78 HOH HOH . 
P 6 HOH B 26 1126 85 HOH HOH . 
P 6 HOH B 27 1127 87 HOH HOH . 
P 6 HOH B 28 1128 91 HOH HOH . 
P 6 HOH B 29 1129 118 HOH HOH . 
P 6 HOH B 30 1130 81 HOH HOH . 
P 6 HOH B 31 1131 121 HOH HOH . 
P 6 HOH B 32 1132 107 HOH HOH . 
P 6 HOH B 33 1133 94 HOH HOH . 
P 6 HOH B 34 1134 106 HOH HOH . 
P 6 HOH B 35 1135 113 HOH HOH . 
P 6 HOH B 36 1136 110 HOH HOH . 
P 6 HOH B 37 1137 123 HOH HOH . 
P 6 HOH B 38 1138 114 HOH HOH . 
P 6 HOH B 39 1139 103 HOH HOH . 
P 6 HOH B 40 1140 125 HOH HOH . 
P 6 HOH B 41 1141 92 HOH HOH . 
P 6 HOH B 42 1142 69 HOH HOH . 
P 6 HOH B 43 1143 74 HOH HOH . 
P 6 HOH B 44 1144 67 HOH HOH . 
P 6 HOH B 45 1145 86 HOH HOH . 
P 6 HOH B 46 1146 124 HOH HOH . 
P 6 HOH B 47 1147 84 HOH HOH . 
P 6 HOH B 48 1148 115 HOH HOH . 
P 6 HOH B 49 1149 112 HOH HOH . 
P 6 HOH B 50 1150 90 HOH HOH . 
P 6 HOH B 51 1151 120 HOH HOH . 
P 6 HOH B 52 1152 117 HOH HOH . 
P 6 HOH B 53 1153 101 HOH HOH . 
P 6 HOH B 54 1154 70 HOH HOH . 
P 6 HOH B 55 1155 63 HOH HOH . 
P 6 HOH B 56 1156 111 HOH HOH . 
P 6 HOH B 57 1157 66 HOH HOH . 
P 6 HOH B 58 1158 96 HOH HOH . 
P 6 HOH B 59 1159 95 HOH HOH . 
P 6 HOH B 60 1160 99 HOH HOH . 
P 6 HOH B 61 1161 100 HOH HOH . 
P 6 HOH B 62 1162 102 HOH HOH . 
P 6 HOH B 63 1163 104 HOH HOH . 
P 6 HOH B 64 1164 76 HOH HOH . 
P 6 HOH B 65 1165 83 HOH HOH . 
P 6 HOH B 66 1166 73 HOH HOH . 
P 6 HOH B 67 1167 105 HOH HOH . 
Q 6 HOH C 1 301 147 HOH HOH . 
Q 6 HOH C 2 302 156 HOH HOH . 
Q 6 HOH C 3 303 150 HOH HOH . 
R 6 HOH D 1 301 152 HOH HOH . 
R 6 HOH D 2 302 153 HOH HOH . 
R 6 HOH D 3 303 151 HOH HOH . 
R 6 HOH D 4 304 155 HOH HOH . 
R 6 HOH D 5 305 154 HOH HOH . 
R 6 HOH D 6 306 134 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               14.633 
_atom_site.Cartn_y               21.166 
_atom_site.Cartn_z               22.391 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        53.86 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           1002 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              143 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    40 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#