data_6PLR # _model_server_result.job_id 7sDT-6JbrTNHiBsoVK3BTQ _model_server_result.datetime_utc '2024-12-17 05:36:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6plr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"OA","auth_seq_id":503}' # _entry.id 6PLR # _exptl.entry_id 6PLR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 114.229 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-OCTANE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 T N N ? 5 AA N N ? 5 OA N N ? 5 CB N N ? 5 QB N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n F NAG 1 F 1 NAG A 501 NAG 2 n F NAG 2 F 2 NAG A 502 NAG 2 n G NAG 1 G 1 NAG B 501 NAG 2 n G NAG 2 G 2 NAG B 502 NAG 2 n H NAG 1 H 1 NAG C 501 NAG 2 n H NAG 2 H 2 NAG C 502 NAG 2 n I NAG 1 I 1 NAG D 501 NAG 2 n I NAG 2 I 2 NAG D 502 NAG 2 n J NAG 1 J 1 NAG E 501 NAG 2 n J NAG 2 J 2 NAG E 502 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 162 A CYS 154 1_555 A SG CYS 176 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 222 A CYS 214 1_555 A SG CYS 233 A CYS 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 B SG CYS 162 B CYS 154 1_555 B SG CYS 176 B CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 B SG CYS 222 B CYS 214 1_555 B SG CYS 233 B CYS 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 C SG CYS 162 C CYS 154 1_555 C SG CYS 176 C CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 C SG CYS 222 C CYS 214 1_555 C SG CYS 233 C CYS 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 D SG CYS 162 D CYS 154 1_555 D SG CYS 176 D CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf8 D SG CYS 222 D CYS 214 1_555 D SG CYS 233 D CYS 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf9 E SG CYS 162 E CYS 154 1_555 E SG CYS 176 E CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf10 E SG CYS 222 E CYS 214 1_555 E SG CYS 233 E CYS 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 A ND2 ASN 62 A ASN 54 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 B ND2 ASN 62 B ASN 54 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale3 C ND2 ASN 62 C ASN 54 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale4 D ND2 ASN 62 D ASN 54 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale5 E ND2 ASN 62 E ASN 54 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale6 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale7 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale8 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale9 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale10 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C8 H18' _chem_comp.formula_weight 114.229 _chem_comp.id OCT _chem_comp.mon_nstd_flag . _chem_comp.name N-OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OCT sing 265 n n C1 H11 OCT sing 266 n n C1 H12 OCT sing 267 n n C1 H13 OCT sing 268 n n C2 C3 OCT sing 269 n n C2 H21 OCT sing 270 n n C2 H22 OCT sing 271 n n C3 C4 OCT sing 272 n n C3 H31 OCT sing 273 n n C3 H32 OCT sing 274 n n C4 C5 OCT sing 275 n n C4 H41 OCT sing 276 n n C4 H42 OCT sing 277 n n C5 C6 OCT sing 278 n n C5 H51 OCT sing 279 n n C5 H52 OCT sing 280 n n C6 C7 OCT sing 281 n n C6 H61 OCT sing 282 n n C6 H62 OCT sing 283 n n C7 C8 OCT sing 284 n n C7 H71 OCT sing 285 n n C7 H72 OCT sing 286 n n C8 H81 OCT sing 287 n n C8 H82 OCT sing 288 n n C8 H83 OCT sing 289 n n # _atom_sites.entry_id 6PLR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 3 UNL A 1 503 603 UNL DD9 . L 3 UNL A 1 504 604 UNL UND . M 3 UNL A 1 505 605 UNL C14 . N 3 UNL A 1 506 609 UNL UND . O 3 UNL A 1 507 610 UNL D10 . P 3 UNL A 1 508 611 UNL HEX . Q 3 UNL A 1 509 613 UNL NBU . R 4 GLY A 1 510 600 GLY GLY . S 3 UNL A 1 511 601 UNL UND . T 5 OCT A 1 512 602 OCT OCT . U 3 UNL A 1 513 606 UNL HP6 . V 3 UNL A 1 514 607 UNL D12 . W 3 UNL A 1 515 608 UNL UND . X 3 UNL A 1 516 612 UNL HP6 . Y 4 GLY B 1 501 600 GLY GLY . Z 3 UNL B 1 502 601 UNL UND . AA 5 OCT B 1 503 602 OCT OCT . BA 3 UNL B 1 504 606 UNL HP6 . CA 3 UNL B 1 505 607 UNL D12 . DA 3 UNL B 1 506 608 UNL UND . EA 3 UNL B 1 507 612 UNL HP6 . FA 3 UNL B 1 510 603 UNL DD9 . GA 3 UNL B 1 511 604 UNL UND . HA 3 UNL B 1 512 605 UNL C14 . IA 3 UNL B 1 513 609 UNL UND . JA 3 UNL B 1 514 610 UNL D10 . KA 3 UNL B 1 515 611 UNL HEX . LA 3 UNL B 1 516 613 UNL NBU . MA 4 GLY C 1 501 600 GLY GLY . NA 3 UNL C 1 502 601 UNL UND . OA 5 OCT C 1 503 602 OCT OCT . PA 3 UNL C 1 504 606 UNL HP6 . QA 3 UNL C 1 505 607 UNL D12 . RA 3 UNL C 1 506 608 UNL UND . SA 3 UNL C 1 507 612 UNL HP6 . TA 3 UNL C 1 510 603 UNL DD9 . UA 3 UNL C 1 511 604 UNL UND . VA 3 UNL C 1 512 605 UNL C14 . WA 3 UNL C 1 513 609 UNL UND . XA 3 UNL C 1 514 610 UNL D10 . YA 3 UNL C 1 515 611 UNL HEX . ZA 3 UNL C 1 516 613 UNL NBU . AB 4 GLY D 1 501 600 GLY GLY . BB 3 UNL D 1 502 601 UNL UND . CB 5 OCT D 1 503 602 OCT OCT . DB 3 UNL D 1 504 606 UNL HP6 . EB 3 UNL D 1 505 607 UNL D12 . FB 3 UNL D 1 506 608 UNL UND . GB 3 UNL D 1 507 612 UNL HP6 . HB 3 UNL D 1 510 603 UNL DD9 . IB 3 UNL D 1 511 604 UNL UND . JB 3 UNL D 1 512 605 UNL C14 . KB 3 UNL D 1 513 609 UNL UND . LB 3 UNL D 1 514 610 UNL D10 . MB 3 UNL D 1 515 611 UNL HEX . NB 3 UNL D 1 516 613 UNL NBU . OB 4 GLY E 1 501 600 GLY GLY . PB 3 UNL E 1 502 601 UNL UND . QB 5 OCT E 1 503 602 OCT OCT . RB 3 UNL E 1 504 606 UNL HP6 . SB 3 UNL E 1 505 607 UNL D12 . TB 3 UNL E 1 506 608 UNL UND . UB 3 UNL E 1 507 612 UNL HP6 . VB 3 UNL E 1 510 603 UNL DD9 . WB 3 UNL E 1 511 604 UNL UND . XB 3 UNL E 1 512 605 UNL C14 . YB 3 UNL E 1 513 609 UNL UND . ZB 3 UNL E 1 514 610 UNL D10 . AC 3 UNL E 1 515 611 UNL HEX . BC 3 UNL E 1 516 613 UNL NBU . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OCT . . . OA 5 145.976 144.371 178.818 1 88.41 ? C1 OCT 503 C 1 HETATM 2 C C2 OCT . . . OA 5 145.087 143.193 179.209 1 88.41 ? C2 OCT 503 C 1 HETATM 3 C C3 OCT . . . OA 5 143.95 143.063 178.2 1 88.41 ? C3 OCT 503 C 1 HETATM 4 C C4 OCT . . . OA 5 144.505 142.591 176.859 1 88.41 ? C4 OCT 503 C 1 HETATM 5 C C5 OCT . . . OA 5 143.512 142.945 175.756 1 88.41 ? C5 OCT 503 C 1 HETATM 6 C C6 OCT . . . OA 5 143.889 142.217 174.468 1 88.41 ? C6 OCT 503 C 1 HETATM 7 C C7 OCT . . . OA 5 142.824 142.486 173.408 1 88.41 ? C7 OCT 503 C 1 HETATM 8 C C8 OCT . . . OA 5 143.142 141.677 172.154 1 88.41 ? C8 OCT 503 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #