data_6PM9 # _model_server_result.job_id pCHDjLP9P-ZaA3u9dFjKDA _model_server_result.datetime_utc '2024-12-26 15:14:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pm9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":501}' # _entry.id 6PM9 # _exptl.entry_id 6PM9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 268.281 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3aR,5S,6S,7R,7aR)-5-(difluoromethyl)-2-(ethylamino)-5,6,7,7a-tetrahydro-3aH-pyrano[3,2-d][1,3]thiazole-6,7-diol _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 77.27 _cell.angle_beta 62.61 _cell.angle_gamma 62.86 _cell.entry_id 6PM9 _cell.length_a 89.92 _cell.length_b 91.46 _cell.length_c 94.61 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PM9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,I,J,M,N,R,S 1 1 C,D,E,H,K,L,O,P,Q,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # _chem_comp.formula 'C9 H14 F2 N2 O3 S' _chem_comp.formula_weight 268.281 _chem_comp.id OQ1 _chem_comp.mon_nstd_flag . _chem_comp.name (3aR,5S,6S,7R,7aR)-5-(difluoromethyl)-2-(ethylamino)-5,6,7,7a-tetrahydro-3aH-pyrano[3,2-d][1,3]thiazole-6,7-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C11 OQ1 sing 237 n n C11 N10 OQ1 sing 238 n n N10 C9 OQ1 sing 239 n n C9 N OQ1 doub 240 n n C9 S OQ1 sing 241 n n N C3 OQ1 sing 242 n n S C4 OQ1 sing 243 n n C3 C2 OQ1 sing 244 n n C3 C4 OQ1 sing 245 n n C2 O6 OQ1 sing 246 n n C2 C1 OQ1 sing 247 n n C4 O OQ1 sing 248 n n C1 O7 OQ1 sing 249 n n C1 C OQ1 sing 250 n n O C OQ1 sing 251 n n C C5 OQ1 sing 252 n n C5 F OQ1 sing 253 n n C5 F1 OQ1 sing 254 n n C1 H1 OQ1 sing 255 n n C2 H2 OQ1 sing 256 n n C3 H3 OQ1 sing 257 n n C4 H4 OQ1 sing 258 n n C5 H5 OQ1 sing 259 n n C11 H6 OQ1 sing 260 n n C11 H7 OQ1 sing 261 n n C12 H8 OQ1 sing 262 n n C12 H9 OQ1 sing 263 n n C12 H10 OQ1 sing 264 n n C H11 OQ1 sing 265 n n O6 H12 OQ1 sing 266 n n O7 H13 OQ1 sing 267 n n N10 H14 OQ1 sing 268 n n # _atom_sites.entry_id 6PM9 _atom_sites.fract_transf_matrix[1][1] 0.011121 _atom_sites.fract_transf_matrix[1][2] -0.005701 _atom_sites.fract_transf_matrix[1][3] -0.005687 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012287 _atom_sites.fract_transf_matrix[2][3] -0.000163 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011905 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 OQ1 A 1 501 1 OQ1 184 . J 3 OQ1 B 1 501 2 OQ1 184 . K 3 OQ1 C 1 501 3 OQ1 184 . L 3 OQ1 D 1 501 4 OQ1 184 . M 4 HOH A 1 601 64 HOH HOH . M 4 HOH A 2 602 65 HOH HOH . M 4 HOH A 3 603 34 HOH HOH . M 4 HOH A 4 604 13 HOH HOH . M 4 HOH A 5 605 46 HOH HOH . M 4 HOH A 6 606 48 HOH HOH . N 4 HOH B 1 601 58 HOH HOH . N 4 HOH B 2 602 56 HOH HOH . N 4 HOH B 3 603 2 HOH HOH . N 4 HOH B 4 604 25 HOH HOH . N 4 HOH B 5 605 21 HOH HOH . N 4 HOH B 6 606 37 HOH HOH . N 4 HOH B 7 607 6 HOH HOH . N 4 HOH B 8 608 44 HOH HOH . N 4 HOH B 9 609 38 HOH HOH . O 4 HOH C 1 601 57 HOH HOH . O 4 HOH C 2 602 59 HOH HOH . O 4 HOH C 3 603 62 HOH HOH . O 4 HOH C 4 604 22 HOH HOH . O 4 HOH C 5 605 63 HOH HOH . O 4 HOH C 6 606 50 HOH HOH . O 4 HOH C 7 607 17 HOH HOH . O 4 HOH C 8 608 41 HOH HOH . P 4 HOH D 1 601 66 HOH HOH . P 4 HOH D 2 602 8 HOH HOH . P 4 HOH D 3 603 4 HOH HOH . Q 4 HOH E 1 801 55 HOH HOH . Q 4 HOH E 2 802 16 HOH HOH . R 4 HOH F 1 801 1 HOH HOH . R 4 HOH F 2 802 15 HOH HOH . R 4 HOH F 3 803 28 HOH HOH . S 4 HOH G 1 801 54 HOH HOH . T 4 HOH H 1 801 19 HOH HOH . T 4 HOH H 2 802 43 HOH HOH . T 4 HOH H 3 803 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OQ1 . . . K 3 18.591 -59.779 17.687 1 53.49 ? C1 OQ1 501 C 1 HETATM 2 C C2 OQ1 . . . K 3 19.951 -59.552 17.061 1 53.5 ? C2 OQ1 501 C 1 HETATM 3 C C3 OQ1 . . . K 3 19.853 -58.985 15.681 1 52.04 ? C3 OQ1 501 C 1 HETATM 4 C C4 OQ1 . . . K 3 18.831 -59.743 14.847 1 53.6 ? C4 OQ1 501 C 1 HETATM 5 C C5 OQ1 . . . K 3 16.274 -60.657 17.188 1 55.3 ? C5 OQ1 501 C 1 HETATM 6 C C11 OQ1 . . . K 3 22.176 -60.95 12.135 1 45.32 ? C11 OQ1 501 C 1 HETATM 7 C C9 OQ1 . . . K 3 21.251 -59.819 14.068 1 52.28 ? C9 OQ1 501 C 1 HETATM 8 C C12 OQ1 . . . K 3 23.324 -61.888 11.875 1 44.48 ? C12 OQ1 501 C 1 HETATM 9 C C OQ1 . . . K 3 17.759 -60.764 16.876 1 52.75 ? C OQ1 501 C 1 HETATM 10 O O OQ1 . . . K 3 17.885 -60.631 15.458 1 50.86 ? O OQ1 501 C 1 HETATM 11 O O6 OQ1 . . . K 3 20.702 -58.618 17.819 1 55.46 ? O6 OQ1 501 C 1 HETATM 12 O O7 OQ1 . . . K 3 18.87 -60.395 18.934 1 54.06 ? O7 OQ1 501 C 1 HETATM 13 F F OQ1 . . . K 3 15.57 -61.395 16.301 1 55.46 ? F OQ1 501 C 1 HETATM 14 N N OQ1 . . . K 3 21.211 -59.057 15.116 1 51.87 ? N OQ1 501 C 1 HETATM 15 S S OQ1 . . . K 3 19.762 -60.547 13.541 1 57.37 ? S OQ1 501 C 1 HETATM 16 N N10 OQ1 . . . K 3 22.341 -60.122 13.305 1 46.87 ? N10 OQ1 501 C 1 HETATM 17 F F1 OQ1 . . . K 3 15.957 -61.288 18.344 1 57.48 ? F1 OQ1 501 C 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #