data_6PMA # _model_server_result.job_id 8ma-4Tw0DWK1t65S2VmiDQ _model_server_result.datetime_utc '2024-12-23 06:43:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pma # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 6PMA # _exptl.entry_id 6PMA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 477.824 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2-chloro-5-(trifluoromethyl)phenyl]-2-[1-(4-methoxyphenyl)-4-oxo-1,4-dihydro-5H-pyrazolo[3,4-d]pyrimidin-5-yl]acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6PMA _cell.length_a 52.094 _cell.length_b 52.094 _cell.length_c 227.16 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PMA _symmetry.cell_setting ? _symmetry.Int_Tables_number 151 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 1 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 192 A TYR 676 1_555 A N SEP 193 A SEP 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C SEP 193 A SEP 677 1_555 A N THR 194 A THR 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C21 H15 Cl F3 N5 O3' _chem_comp.formula_weight 477.824 _chem_comp.id OQS _chem_comp.mon_nstd_flag . _chem_comp.name N-[2-chloro-5-(trifluoromethyl)phenyl]-2-[1-(4-methoxyphenyl)-4-oxo-1,4-dihydro-5H-pyrazolo[3,4-d]pyrimidin-5-yl]acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 OQS sing 237 n n O1 C2 OQS sing 238 n n C2 C3 OQS doub 239 n y C2 C21 OQS sing 240 n y C3 C4 OQS sing 241 n y C21 C20 OQS doub 242 n y C4 C5 OQS doub 243 n y C20 C5 OQS sing 244 n y C5 N1 OQS sing 245 n n N1 N2 OQS sing 246 n y N1 C19 OQS sing 247 n y N2 C6 OQS doub 248 n y C19 N5 OQS sing 249 n n C19 C7 OQS doub 250 n y N5 C18 OQS doub 251 n n C6 C7 OQS sing 252 n y C7 C8 OQS sing 253 n n C18 N3 OQS sing 254 n n C8 N3 OQS sing 255 n n C8 O2 OQS doub 256 n n N3 C9 OQS sing 257 n n C9 C10 OQS sing 258 n n O3 C10 OQS doub 259 n n C10 N4 OQS sing 260 n n N4 C11 OQS sing 261 n n F1 C14 OQS sing 262 n n C12 C11 OQS doub 263 n y C12 C13 OQS sing 264 n y C11 C17 OQS sing 265 n y F3 C14 OQS sing 266 n n C14 C13 OQS sing 267 n n C14 F2 OQS sing 268 n n C13 C15 OQS doub 269 n y C17 CL1 OQS sing 270 n n C17 C16 OQS doub 271 n y C15 C16 OQS sing 272 n y C4 H1 OQS sing 273 n n C6 H2 OQS sing 274 n n C9 H3 OQS sing 275 n n C9 H4 OQS sing 276 n n C12 H5 OQS sing 277 n n C3 H6 OQS sing 278 n n C1 H7 OQS sing 279 n n C1 H8 OQS sing 280 n n C1 H9 OQS sing 281 n n N4 H10 OQS sing 282 n n C15 H11 OQS sing 283 n n C16 H12 OQS sing 284 n n C18 H13 OQS sing 285 n n C20 H14 OQS sing 286 n n C21 H15 OQS sing 287 n n # _atom_sites.entry_id 6PMA _atom_sites.fract_transf_matrix[1][1] 0.019196 _atom_sites.fract_transf_matrix[1][2] 0.011083 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022166 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004402 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OQS A 1 801 801 OQS DRG . C 3 HOH A 1 901 31 HOH HOH . C 3 HOH A 2 902 33 HOH HOH . C 3 HOH A 3 903 32 HOH HOH . C 3 HOH A 4 904 23 HOH HOH . C 3 HOH A 5 905 28 HOH HOH . C 3 HOH A 6 906 15 HOH HOH . C 3 HOH A 7 907 21 HOH HOH . C 3 HOH A 8 908 4 HOH HOH . C 3 HOH A 9 909 14 HOH HOH . C 3 HOH A 10 910 9 HOH HOH . C 3 HOH A 11 911 17 HOH HOH . C 3 HOH A 12 912 1 HOH HOH . C 3 HOH A 13 913 29 HOH HOH . C 3 HOH A 14 914 24 HOH HOH . C 3 HOH A 15 915 3 HOH HOH . C 3 HOH A 16 916 8 HOH HOH . C 3 HOH A 17 917 5 HOH HOH . C 3 HOH A 18 918 10 HOH HOH . C 3 HOH A 19 919 22 HOH HOH . C 3 HOH A 20 920 18 HOH HOH . C 3 HOH A 21 921 27 HOH HOH . C 3 HOH A 22 922 25 HOH HOH . C 3 HOH A 23 923 26 HOH HOH . C 3 HOH A 24 924 2 HOH HOH . C 3 HOH A 25 925 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 OQS . . . B 2 14.276 1.209 13.616 1 33.42 ? C4 OQS 801 A 1 HETATM 2 C C14 OQS . . . B 2 9.135 4.646 24.691 1 43.96 ? C14 OQS 801 A 1 HETATM 3 C C5 OQS . . . B 2 13.443 0.673 14.585 1 33.47 ? C5 OQS 801 A 1 HETATM 4 C C6 OQS . . . B 2 15.541 0.085 17.367 1 32.9 ? C6 OQS 801 A 1 HETATM 5 C C11 OQS . . . B 2 11.543 1.859 24.147 1 42.69 ? C11 OQS 801 A 1 HETATM 6 C C7 OQS . . . B 2 14.322 0.105 18.064 1 33.97 ? C7 OQS 801 A 1 HETATM 7 C C8 OQS . . . B 2 13.928 -0.054 19.419 1 33.36 ? C8 OQS 801 A 1 HETATM 8 C C9 OQS . . . B 2 12.086 -0.146 21.006 1 34.1 ? C9 OQS 801 A 1 HETATM 9 C C10 OQS . . . B 2 11.959 1.137 21.773 1 37.02 ? C10 OQS 801 A 1 HETATM 10 C C12 OQS . . . B 2 10.541 2.786 23.943 1 42.63 ? C12 OQS 801 A 1 HETATM 11 C C13 OQS . . . B 2 10.172 3.633 24.962 1 41.68 ? C13 OQS 801 A 1 HETATM 12 N N1 OQS . . . B 2 13.96 0.436 15.898 1 33.49 ? N1 OQS 801 A 1 HETATM 13 N N2 OQS . . . B 2 15.33 0.314 16.092 1 33.97 ? N2 OQS 801 A 1 HETATM 14 C C3 OQS . . . B 2 13.774 1.524 12.363 1 33.61 ? C3 OQS 801 A 1 HETATM 15 N N3 OQS . . . B 2 12.554 0.058 19.631 1 33.04 ? N3 OQS 801 A 1 HETATM 16 C C1 OQS . . . B 2 12.853 2.075 9.854 1 31.36 ? C1 OQS 801 A 1 HETATM 17 O O1 OQS . . . B 2 11.947 1.564 10.82 1 32.14 ? O1 OQS 801 A 1 HETATM 18 C C2 OQS . . . B 2 12.436 1.27 12.063 1 32.95 ? C2 OQS 801 A 1 HETATM 19 O O2 OQS . . . B 2 14.655 -0.267 20.374 1 36.9 ? O2 OQS 801 A 1 HETATM 20 O O3 OQS . . . B 2 11.828 2.205 21.2 1 38.83 ? O3 OQS 801 A 1 HETATM 21 N N4 OQS . . . B 2 11.953 0.977 23.113 1 42.7 ? N4 OQS 801 A 1 HETATM 22 F F1 OQS . . . B 2 8.26 4.244 23.803 1 47.21 ? F1 OQS 801 A 1 HETATM 23 F F2 OQS . . . B 2 8.449 4.968 25.709 1 43.04 ? F2 OQS 801 A 1 HETATM 24 F F3 OQS . . . B 2 9.658 5.785 24.287 1 48.42 ? F3 OQS 801 A 1 HETATM 25 C C15 OQS . . . B 2 10.823 3.599 26.171 1 43.64 ? C15 OQS 801 A 1 HETATM 26 C C16 OQS . . . B 2 11.811 2.673 26.401 1 43.68 ? C16 OQS 801 A 1 HETATM 27 C C17 OQS . . . B 2 12.172 1.815 25.387 1 45.12 ? C17 OQS 801 A 1 HETATM 28 CL CL1 OQS . . . B 2 13.45 0.666 25.671 1 72.35 ? CL1 OQS 801 A 1 HETATM 29 C C18 OQS . . . B 2 11.681 0.265 18.606 1 31.92 ? C18 OQS 801 A 1 HETATM 30 N N5 OQS . . . B 2 12.011 0.418 17.356 1 32.88 ? N5 OQS 801 A 1 HETATM 31 C C19 OQS . . . B 2 13.341 0.327 17.102 1 33.37 ? C19 OQS 801 A 1 HETATM 32 C C20 OQS . . . B 2 12.118 0.389 14.273 1 34.1 ? C20 OQS 801 A 1 HETATM 33 C C21 OQS . . . B 2 11.615 0.669 13.008 1 31.24 ? C21 OQS 801 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #