data_6PMF # _model_server_result.job_id xYc3yKlQoGv5AR89fok10g _model_server_result.datetime_utc '2024-10-19 06:39:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pmf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 6PMF # _exptl.entry_id 6PMF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.53 _cell.angle_gamma 90 _cell.entry_id 6PMF _cell.length_a 117.72 _cell.length_b 64.07 _cell.length_c 74.73 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PMF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 30 1_555 A SG CYS 33 A CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? disulf ? disulf2 B SG CYS 30 B CYS 30 1_555 B SG CYS 33 B CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc1 B N ALA 1 B ALA 1 1_555 D CU CU . B CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc2 B O ALA 1 B ALA 1 1_555 D CU CU . B CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc3 B OE1 GLU 4 B GLU 4 1_555 D CU CU . B CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc4 B OD1 ASP 44 B ASP 44 1_555 D CU CU . B CU 201 4_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc5 B OD2 ASP 44 B ASP 44 1_555 D CU CU . B CU 201 4_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc6 D CU CU . B CU 201 1_555 F O HOH . B HOH 395 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6PMF _atom_sites.fract_transf_matrix[1][1] 0.008495 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006066 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016443 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LD9 A 1 201 1 LD9 LD9 . D 3 CU B 1 201 1 CU CU . E 4 HOH A 1 301 109 HOH HOH . E 4 HOH A 2 302 20 HOH HOH . E 4 HOH A 3 303 27 HOH HOH . E 4 HOH A 4 304 96 HOH HOH . E 4 HOH A 5 305 165 HOH HOH . E 4 HOH A 6 306 8 HOH HOH . E 4 HOH A 7 307 41 HOH HOH . E 4 HOH A 8 308 77 HOH HOH . E 4 HOH A 9 309 145 HOH HOH . E 4 HOH A 10 310 301 HOH HOH . E 4 HOH A 11 311 143 HOH HOH . E 4 HOH A 12 312 169 HOH HOH . E 4 HOH A 13 313 1 HOH HOH . E 4 HOH A 14 314 42 HOH HOH . E 4 HOH A 15 315 119 HOH HOH . E 4 HOH A 16 316 63 HOH HOH . E 4 HOH A 17 317 149 HOH HOH . E 4 HOH A 18 318 128 HOH HOH . E 4 HOH A 19 319 215 HOH HOH . E 4 HOH A 20 320 89 HOH HOH . E 4 HOH A 21 321 93 HOH HOH . E 4 HOH A 22 322 11 HOH HOH . E 4 HOH A 23 323 88 HOH HOH . E 4 HOH A 24 324 39 HOH HOH . E 4 HOH A 25 325 49 HOH HOH . E 4 HOH A 26 326 24 HOH HOH . E 4 HOH A 27 327 14 HOH HOH . E 4 HOH A 28 328 298 HOH HOH . E 4 HOH A 29 329 4 HOH HOH . E 4 HOH A 30 330 12 HOH HOH . E 4 HOH A 31 331 66 HOH HOH . E 4 HOH A 32 332 3 HOH HOH . E 4 HOH A 33 333 138 HOH HOH . E 4 HOH A 34 334 126 HOH HOH . E 4 HOH A 35 335 278 HOH HOH . E 4 HOH A 36 336 206 HOH HOH . E 4 HOH A 37 337 64 HOH HOH . E 4 HOH A 38 338 259 HOH HOH . E 4 HOH A 39 339 247 HOH HOH . E 4 HOH A 40 340 257 HOH HOH . E 4 HOH A 41 341 91 HOH HOH . E 4 HOH A 42 342 17 HOH HOH . E 4 HOH A 43 343 85 HOH HOH . E 4 HOH A 44 344 22 HOH HOH . E 4 HOH A 45 345 142 HOH HOH . E 4 HOH A 46 346 5 HOH HOH . E 4 HOH A 47 347 307 HOH HOH . E 4 HOH A 48 348 258 HOH HOH . E 4 HOH A 49 349 82 HOH HOH . E 4 HOH A 50 350 160 HOH HOH . E 4 HOH A 51 351 114 HOH HOH . E 4 HOH A 52 352 62 HOH HOH . E 4 HOH A 53 353 127 HOH HOH . E 4 HOH A 54 354 284 HOH HOH . E 4 HOH A 55 355 21 HOH HOH . E 4 HOH A 56 356 74 HOH HOH . E 4 HOH A 57 357 76 HOH HOH . E 4 HOH A 58 358 207 HOH HOH . E 4 HOH A 59 359 18 HOH HOH . E 4 HOH A 60 360 125 HOH HOH . E 4 HOH A 61 361 34 HOH HOH . E 4 HOH A 62 362 67 HOH HOH . E 4 HOH A 63 363 25 HOH HOH . E 4 HOH A 64 364 60 HOH HOH . E 4 HOH A 65 365 184 HOH HOH . E 4 HOH A 66 366 314 HOH HOH . E 4 HOH A 67 367 253 HOH HOH . E 4 HOH A 68 368 48 HOH HOH . E 4 HOH A 69 369 19 HOH HOH . E 4 HOH A 70 370 262 HOH HOH . E 4 HOH A 71 371 30 HOH HOH . E 4 HOH A 72 372 304 HOH HOH . E 4 HOH A 73 373 194 HOH HOH . E 4 HOH A 74 374 242 HOH HOH . E 4 HOH A 75 375 251 HOH HOH . E 4 HOH A 76 376 97 HOH HOH . E 4 HOH A 77 377 69 HOH HOH . E 4 HOH A 78 378 99 HOH HOH . E 4 HOH A 79 379 72 HOH HOH . E 4 HOH A 80 380 236 HOH HOH . E 4 HOH A 81 381 9 HOH HOH . E 4 HOH A 82 382 296 HOH HOH . E 4 HOH A 83 383 38 HOH HOH . E 4 HOH A 84 384 92 HOH HOH . E 4 HOH A 85 385 16 HOH HOH . E 4 HOH A 86 386 231 HOH HOH . E 4 HOH A 87 387 245 HOH HOH . E 4 HOH A 88 388 135 HOH HOH . E 4 HOH A 89 389 133 HOH HOH . E 4 HOH A 90 390 146 HOH HOH . E 4 HOH A 91 391 183 HOH HOH . E 4 HOH A 92 392 31 HOH HOH . E 4 HOH A 93 393 266 HOH HOH . E 4 HOH A 94 394 95 HOH HOH . E 4 HOH A 95 395 106 HOH HOH . E 4 HOH A 96 396 35 HOH HOH . E 4 HOH A 97 397 172 HOH HOH . E 4 HOH A 98 398 180 HOH HOH . E 4 HOH A 99 399 263 HOH HOH . E 4 HOH A 100 400 162 HOH HOH . E 4 HOH A 101 401 61 HOH HOH . E 4 HOH A 102 402 297 HOH HOH . E 4 HOH A 103 403 87 HOH HOH . E 4 HOH A 104 404 110 HOH HOH . E 4 HOH A 105 405 147 HOH HOH . E 4 HOH A 106 406 94 HOH HOH . E 4 HOH A 107 407 23 HOH HOH . E 4 HOH A 108 408 129 HOH HOH . E 4 HOH A 109 409 45 HOH HOH . E 4 HOH A 110 410 285 HOH HOH . E 4 HOH A 111 411 168 HOH HOH . E 4 HOH A 112 412 192 HOH HOH . E 4 HOH A 113 413 157 HOH HOH . E 4 HOH A 114 414 163 HOH HOH . E 4 HOH A 115 415 198 HOH HOH . E 4 HOH A 116 416 132 HOH HOH . E 4 HOH A 117 417 230 HOH HOH . E 4 HOH A 118 418 164 HOH HOH . E 4 HOH A 119 419 216 HOH HOH . E 4 HOH A 120 420 313 HOH HOH . E 4 HOH A 121 421 10 HOH HOH . E 4 HOH A 122 422 315 HOH HOH . E 4 HOH A 123 423 187 HOH HOH . E 4 HOH A 124 424 111 HOH HOH . E 4 HOH A 125 425 305 HOH HOH . E 4 HOH A 126 426 141 HOH HOH . E 4 HOH A 127 427 174 HOH HOH . E 4 HOH A 128 428 124 HOH HOH . E 4 HOH A 129 429 29 HOH HOH . E 4 HOH A 130 430 261 HOH HOH . E 4 HOH A 131 431 57 HOH HOH . E 4 HOH A 132 432 191 HOH HOH . E 4 HOH A 133 433 255 HOH HOH . E 4 HOH A 134 434 107 HOH HOH . E 4 HOH A 135 435 238 HOH HOH . E 4 HOH A 136 436 113 HOH HOH . E 4 HOH A 137 437 237 HOH HOH . E 4 HOH A 138 438 86 HOH HOH . E 4 HOH A 139 439 54 HOH HOH . E 4 HOH A 140 440 256 HOH HOH . E 4 HOH A 141 441 227 HOH HOH . E 4 HOH A 142 442 269 HOH HOH . E 4 HOH A 143 443 274 HOH HOH . E 4 HOH A 144 444 179 HOH HOH . E 4 HOH A 145 445 144 HOH HOH . E 4 HOH A 146 446 46 HOH HOH . E 4 HOH A 147 447 224 HOH HOH . F 4 HOH B 1 301 292 HOH HOH . F 4 HOH B 2 302 65 HOH HOH . F 4 HOH B 3 303 136 HOH HOH . F 4 HOH B 4 304 167 HOH HOH . F 4 HOH B 5 305 112 HOH HOH . F 4 HOH B 6 306 211 HOH HOH . F 4 HOH B 7 307 139 HOH HOH . F 4 HOH B 8 308 103 HOH HOH . F 4 HOH B 9 309 276 HOH HOH . F 4 HOH B 10 310 213 HOH HOH . F 4 HOH B 11 311 117 HOH HOH . F 4 HOH B 12 312 2 HOH HOH . F 4 HOH B 13 313 28 HOH HOH . F 4 HOH B 14 314 15 HOH HOH . F 4 HOH B 15 315 7 HOH HOH . F 4 HOH B 16 316 234 HOH HOH . F 4 HOH B 17 317 108 HOH HOH . F 4 HOH B 18 318 272 HOH HOH . F 4 HOH B 19 319 56 HOH HOH . F 4 HOH B 20 320 196 HOH HOH . F 4 HOH B 21 321 152 HOH HOH . F 4 HOH B 22 322 222 HOH HOH . F 4 HOH B 23 323 283 HOH HOH . F 4 HOH B 24 324 219 HOH HOH . F 4 HOH B 25 325 33 HOH HOH . F 4 HOH B 26 326 148 HOH HOH . F 4 HOH B 27 327 306 HOH HOH . F 4 HOH B 28 328 83 HOH HOH . F 4 HOH B 29 329 13 HOH HOH . F 4 HOH B 30 330 100 HOH HOH . F 4 HOH B 31 331 173 HOH HOH . F 4 HOH B 32 332 50 HOH HOH . F 4 HOH B 33 333 44 HOH HOH . F 4 HOH B 34 334 26 HOH HOH . F 4 HOH B 35 335 190 HOH HOH . F 4 HOH B 36 336 36 HOH HOH . F 4 HOH B 37 337 37 HOH HOH . F 4 HOH B 38 338 166 HOH HOH . F 4 HOH B 39 339 134 HOH HOH . F 4 HOH B 40 340 282 HOH HOH . F 4 HOH B 41 341 289 HOH HOH . F 4 HOH B 42 342 214 HOH HOH . F 4 HOH B 43 343 208 HOH HOH . F 4 HOH B 44 344 6 HOH HOH . F 4 HOH B 45 345 260 HOH HOH . F 4 HOH B 46 346 294 HOH HOH . F 4 HOH B 47 347 202 HOH HOH . F 4 HOH B 48 348 73 HOH HOH . F 4 HOH B 49 349 185 HOH HOH . F 4 HOH B 50 350 47 HOH HOH . F 4 HOH B 51 351 102 HOH HOH . F 4 HOH B 52 352 43 HOH HOH . F 4 HOH B 53 353 150 HOH HOH . F 4 HOH B 54 354 78 HOH HOH . F 4 HOH B 55 355 186 HOH HOH . F 4 HOH B 56 356 68 HOH HOH . F 4 HOH B 57 357 199 HOH HOH . F 4 HOH B 58 358 84 HOH HOH . F 4 HOH B 59 359 153 HOH HOH . F 4 HOH B 60 360 59 HOH HOH . F 4 HOH B 61 361 225 HOH HOH . F 4 HOH B 62 362 295 HOH HOH . F 4 HOH B 63 363 32 HOH HOH . F 4 HOH B 64 364 40 HOH HOH . F 4 HOH B 65 365 287 HOH HOH . F 4 HOH B 66 366 51 HOH HOH . F 4 HOH B 67 367 79 HOH HOH . F 4 HOH B 68 368 81 HOH HOH . F 4 HOH B 69 369 252 HOH HOH . F 4 HOH B 70 370 123 HOH HOH . F 4 HOH B 71 371 158 HOH HOH . F 4 HOH B 72 372 171 HOH HOH . F 4 HOH B 73 373 286 HOH HOH . F 4 HOH B 74 374 271 HOH HOH . F 4 HOH B 75 375 293 HOH HOH . F 4 HOH B 76 376 154 HOH HOH . F 4 HOH B 77 377 300 HOH HOH . F 4 HOH B 78 378 101 HOH HOH . F 4 HOH B 79 379 299 HOH HOH . F 4 HOH B 80 380 120 HOH HOH . F 4 HOH B 81 381 122 HOH HOH . F 4 HOH B 82 382 177 HOH HOH . F 4 HOH B 83 383 264 HOH HOH . F 4 HOH B 84 384 302 HOH HOH . F 4 HOH B 85 385 288 HOH HOH . F 4 HOH B 86 386 105 HOH HOH . F 4 HOH B 87 387 181 HOH HOH . F 4 HOH B 88 388 58 HOH HOH . F 4 HOH B 89 389 75 HOH HOH . F 4 HOH B 90 390 197 HOH HOH . F 4 HOH B 91 391 116 HOH HOH . F 4 HOH B 92 392 244 HOH HOH . F 4 HOH B 93 393 161 HOH HOH . F 4 HOH B 94 394 104 HOH HOH . F 4 HOH B 95 395 178 HOH HOH . F 4 HOH B 96 396 175 HOH HOH . F 4 HOH B 97 397 71 HOH HOH . F 4 HOH B 98 398 118 HOH HOH . F 4 HOH B 99 399 170 HOH HOH . F 4 HOH B 100 400 291 HOH HOH . F 4 HOH B 101 401 290 HOH HOH . F 4 HOH B 102 402 267 HOH HOH . F 4 HOH B 103 403 277 HOH HOH . F 4 HOH B 104 404 137 HOH HOH . F 4 HOH B 105 405 218 HOH HOH . F 4 HOH B 106 406 188 HOH HOH . F 4 HOH B 107 407 90 HOH HOH . F 4 HOH B 108 408 189 HOH HOH . F 4 HOH B 109 409 312 HOH HOH . F 4 HOH B 110 410 121 HOH HOH . F 4 HOH B 111 411 52 HOH HOH . F 4 HOH B 112 412 140 HOH HOH . F 4 HOH B 113 413 232 HOH HOH . F 4 HOH B 114 414 182 HOH HOH . F 4 HOH B 115 415 308 HOH HOH . F 4 HOH B 116 416 70 HOH HOH . F 4 HOH B 117 417 240 HOH HOH . F 4 HOH B 118 418 239 HOH HOH . F 4 HOH B 119 419 281 HOH HOH . F 4 HOH B 120 420 98 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 9.085 _atom_site.Cartn_y 19.406 _atom_site.Cartn_z 30.861 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.97 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 201 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 395 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #