data_6PMZ
#
_model_server_result.job_id            0b-rWCTm1ORlOBQcG7GguA 
_model_server_result.datetime_utc      '2024-11-24 14:25:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pmz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":802}' 
#
_entry.id    6PMZ 
#
_exptl.entry_id    6PMZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              241.247 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5,6,7,8-TETRAHYDROBIOPTERIN 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PMZ 
_cell.length_a            51.435 
_cell.length_b            110.867 
_cell.length_c            164.375 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PMZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 G ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc2 A SG CYS 35 A CYS 331 1_555 G ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc3 A SG CYS 119 A CYS 415 1_555 C FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc4 G ZN ZN . A ZN 805 1_555 B SG CYS 30 B CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc5 G ZN ZN . A ZN 805 1_555 B SG CYS 35 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc6 B SG CYS 119 B CYS 415 1_555 H FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
#
_chem_comp.formula           'C9 H15 N5 O3' 
_chem_comp.formula_weight    241.247 
_chem_comp.id                H4B 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5,6,7,8-TETRAHYDROBIOPTERIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 H4B doub 135 n y 
N1 C8A H4B sing 136 n y 
C2 N2 H4B sing 137 n n 
C2 N3 H4B sing 138 n y 
N2 HN21 H4B sing 139 n n 
N2 HN22 H4B sing 140 n n 
N3 C4 H4B sing 141 n y 
N3 HN3 H4B sing 142 n n 
C4 O4 H4B doub 143 n n 
C4 C4A H4B sing 144 n y 
C4A C8A H4B doub 145 n y 
C4A N5 H4B sing 146 n n 
C8A N8 H4B sing 147 n n 
N5 C6 H4B sing 148 n n 
N5 HN5 H4B sing 149 n n 
N8 C7 H4B sing 150 n n 
N8 HN8 H4B sing 151 n n 
C6 C7 H4B sing 152 n n 
C6 C9 H4B sing 153 n n 
C6 H6 H4B sing 154 n n 
C7 H71 H4B sing 155 n n 
C7 H72 H4B sing 156 n n 
C9 O9 H4B sing 157 n n 
C9 C10 H4B sing 158 n n 
C9 H9 H4B sing 159 n n 
O9 HO9 H4B sing 160 n n 
C10 C11 H4B sing 161 n n 
C10 O10 H4B sing 162 n n 
C10 H10 H4B sing 163 n n 
C11 H111 H4B sing 164 n n 
C11 H112 H4B sing 165 n n 
C11 H113 H4B sing 166 n n 
O10 HO0 H4B sing 167 n n 
#
_atom_sites.entry_id                     6PMZ 
_atom_sites.fract_transf_matrix[1][1]    0.019442 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00902 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006084 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 801 750 HEM HEM . 
D 3 H4B A 1 802 760 H4B BH4 . 
E 4 OUA A 1 803 800 OUA M60 . 
F 5 ACT A 1 804 860 ACT ACT . 
G 6 ZN A 1 805 900 ZN ZN . 
H 2 HEM B 1 801 750 HEM HEM . 
I 3 H4B B 1 802 760 H4B BH4 . 
J 4 OUA B 1 803 800 OUA M60 . 
K 5 ACT B 1 804 860 ACT ACT . 
L 7 HOH A 1 901 61 HOH HOH . 
L 7 HOH A 2 902 81 HOH HOH . 
L 7 HOH A 3 903 49 HOH HOH . 
L 7 HOH A 4 904 39 HOH HOH . 
L 7 HOH A 5 905 137 HOH HOH . 
L 7 HOH A 6 906 142 HOH HOH . 
L 7 HOH A 7 907 78 HOH HOH . 
L 7 HOH A 8 908 65 HOH HOH . 
L 7 HOH A 9 909 2 HOH HOH . 
L 7 HOH A 10 910 85 HOH HOH . 
L 7 HOH A 11 911 12 HOH HOH . 
L 7 HOH A 12 912 77 HOH HOH . 
L 7 HOH A 13 913 42 HOH HOH . 
L 7 HOH A 14 914 141 HOH HOH . 
L 7 HOH A 15 915 11 HOH HOH . 
L 7 HOH A 16 916 14 HOH HOH . 
L 7 HOH A 17 917 90 HOH HOH . 
L 7 HOH A 18 918 35 HOH HOH . 
L 7 HOH A 19 919 29 HOH HOH . 
L 7 HOH A 20 920 51 HOH HOH . 
L 7 HOH A 21 921 31 HOH HOH . 
L 7 HOH A 22 922 62 HOH HOH . 
L 7 HOH A 23 923 34 HOH HOH . 
L 7 HOH A 24 924 140 HOH HOH . 
L 7 HOH A 25 925 86 HOH HOH . 
L 7 HOH A 26 926 26 HOH HOH . 
L 7 HOH A 27 927 66 HOH HOH . 
L 7 HOH A 28 928 132 HOH HOH . 
L 7 HOH A 29 929 69 HOH HOH . 
L 7 HOH A 30 930 133 HOH HOH . 
L 7 HOH A 31 931 67 HOH HOH . 
L 7 HOH A 32 932 15 HOH HOH . 
L 7 HOH A 33 933 79 HOH HOH . 
L 7 HOH A 34 934 83 HOH HOH . 
L 7 HOH A 35 935 21 HOH HOH . 
L 7 HOH A 36 936 52 HOH HOH . 
L 7 HOH A 37 937 19 HOH HOH . 
L 7 HOH A 38 938 64 HOH HOH . 
L 7 HOH A 39 939 136 HOH HOH . 
L 7 HOH A 40 940 117 HOH HOH . 
L 7 HOH A 41 941 139 HOH HOH . 
L 7 HOH A 42 942 6 HOH HOH . 
L 7 HOH A 43 943 46 HOH HOH . 
L 7 HOH A 44 944 74 HOH HOH . 
L 7 HOH A 45 945 53 HOH HOH . 
L 7 HOH A 46 946 10 HOH HOH . 
L 7 HOH A 47 947 134 HOH HOH . 
L 7 HOH A 48 948 71 HOH HOH . 
L 7 HOH A 49 949 82 HOH HOH . 
L 7 HOH A 50 950 116 HOH HOH . 
L 7 HOH A 51 951 54 HOH HOH . 
L 7 HOH A 52 952 23 HOH HOH . 
L 7 HOH A 53 953 50 HOH HOH . 
L 7 HOH A 54 954 70 HOH HOH . 
L 7 HOH A 55 955 48 HOH HOH . 
L 7 HOH A 56 956 72 HOH HOH . 
L 7 HOH A 57 957 40 HOH HOH . 
L 7 HOH A 58 958 5 HOH HOH . 
L 7 HOH A 59 959 75 HOH HOH . 
L 7 HOH A 60 960 36 HOH HOH . 
L 7 HOH A 61 961 45 HOH HOH . 
L 7 HOH A 62 962 68 HOH HOH . 
L 7 HOH A 63 963 73 HOH HOH . 
L 7 HOH A 64 964 135 HOH HOH . 
L 7 HOH A 65 965 80 HOH HOH . 
L 7 HOH A 66 966 76 HOH HOH . 
L 7 HOH A 67 967 63 HOH HOH . 
L 7 HOH A 68 968 138 HOH HOH . 
L 7 HOH A 69 969 130 HOH HOH . 
M 7 HOH B 1 901 112 HOH HOH . 
M 7 HOH B 2 902 95 HOH HOH . 
M 7 HOH B 3 903 55 HOH HOH . 
M 7 HOH B 4 904 87 HOH HOH . 
M 7 HOH B 5 905 99 HOH HOH . 
M 7 HOH B 6 906 88 HOH HOH . 
M 7 HOH B 7 907 114 HOH HOH . 
M 7 HOH B 8 908 110 HOH HOH . 
M 7 HOH B 9 909 58 HOH HOH . 
M 7 HOH B 10 910 128 HOH HOH . 
M 7 HOH B 11 911 148 HOH HOH . 
M 7 HOH B 12 912 84 HOH HOH . 
M 7 HOH B 13 913 106 HOH HOH . 
M 7 HOH B 14 914 122 HOH HOH . 
M 7 HOH B 15 915 13 HOH HOH . 
M 7 HOH B 16 916 9 HOH HOH . 
M 7 HOH B 17 917 109 HOH HOH . 
M 7 HOH B 18 918 151 HOH HOH . 
M 7 HOH B 19 919 149 HOH HOH . 
M 7 HOH B 20 920 103 HOH HOH . 
M 7 HOH B 21 921 16 HOH HOH . 
M 7 HOH B 22 922 1 HOH HOH . 
M 7 HOH B 23 923 4 HOH HOH . 
M 7 HOH B 24 924 96 HOH HOH . 
M 7 HOH B 25 925 144 HOH HOH . 
M 7 HOH B 26 926 118 HOH HOH . 
M 7 HOH B 27 927 7 HOH HOH . 
M 7 HOH B 28 928 33 HOH HOH . 
M 7 HOH B 29 929 102 HOH HOH . 
M 7 HOH B 30 930 3 HOH HOH . 
M 7 HOH B 31 931 154 HOH HOH . 
M 7 HOH B 32 932 145 HOH HOH . 
M 7 HOH B 33 933 131 HOH HOH . 
M 7 HOH B 34 934 124 HOH HOH . 
M 7 HOH B 35 935 111 HOH HOH . 
M 7 HOH B 36 936 93 HOH HOH . 
M 7 HOH B 37 937 105 HOH HOH . 
M 7 HOH B 38 938 43 HOH HOH . 
M 7 HOH B 39 939 125 HOH HOH . 
M 7 HOH B 40 940 150 HOH HOH . 
M 7 HOH B 41 941 37 HOH HOH . 
M 7 HOH B 42 942 104 HOH HOH . 
M 7 HOH B 43 943 94 HOH HOH . 
M 7 HOH B 44 944 97 HOH HOH . 
M 7 HOH B 45 945 126 HOH HOH . 
M 7 HOH B 46 946 100 HOH HOH . 
M 7 HOH B 47 947 153 HOH HOH . 
M 7 HOH B 48 948 108 HOH HOH . 
M 7 HOH B 49 949 41 HOH HOH . 
M 7 HOH B 50 950 8 HOH HOH . 
M 7 HOH B 51 951 47 HOH HOH . 
M 7 HOH B 52 952 28 HOH HOH . 
M 7 HOH B 53 953 120 HOH HOH . 
M 7 HOH B 54 954 32 HOH HOH . 
M 7 HOH B 55 955 113 HOH HOH . 
M 7 HOH B 56 956 115 HOH HOH . 
M 7 HOH B 57 957 25 HOH HOH . 
M 7 HOH B 58 958 152 HOH HOH . 
M 7 HOH B 59 959 127 HOH HOH . 
M 7 HOH B 60 960 89 HOH HOH . 
M 7 HOH B 61 961 24 HOH HOH . 
M 7 HOH B 62 962 22 HOH HOH . 
M 7 HOH B 63 963 101 HOH HOH . 
M 7 HOH B 64 964 44 HOH HOH . 
M 7 HOH B 65 965 92 HOH HOH . 
M 7 HOH B 66 966 20 HOH HOH . 
M 7 HOH B 67 967 38 HOH HOH . 
M 7 HOH B 68 968 60 HOH HOH . 
M 7 HOH B 69 969 17 HOH HOH . 
M 7 HOH B 70 970 91 HOH HOH . 
M 7 HOH B 71 971 57 HOH HOH . 
M 7 HOH B 72 972 123 HOH HOH . 
M 7 HOH B 73 973 119 HOH HOH . 
M 7 HOH B 74 974 27 HOH HOH . 
M 7 HOH B 75 975 30 HOH HOH . 
M 7 HOH B 76 976 143 HOH HOH . 
M 7 HOH B 77 977 129 HOH HOH . 
M 7 HOH B 78 978 18 HOH HOH . 
M 7 HOH B 79 979 59 HOH HOH . 
M 7 HOH B 80 980 146 HOH HOH . 
M 7 HOH B 81 981 121 HOH HOH . 
M 7 HOH B 82 982 107 HOH HOH . 
M 7 HOH B 83 983 147 HOH HOH . 
M 7 HOH B 84 984 56 HOH HOH . 
M 7 HOH B 85 985 98 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 H4B . . . D 3 10.062 2.417 33.845 1 61.78 ? N1 H4B 802 A 1 
HETATM 2 C C2 H4B . . . D 3 10.275 1.935 32.603 1 57.68 ? C2 H4B 802 A 1 
HETATM 3 N N2 H4B . . . D 3 11.555 1.765 32.174 1 52.75 ? N2 H4B 802 A 1 
HETATM 4 N N3 H4B . . . D 3 9.223 1.62 31.808 1 57.87 ? N3 H4B 802 A 1 
HETATM 5 C C4 H4B . . . D 3 7.952 1.791 32.242 1 58.56 ? C4 H4B 802 A 1 
HETATM 6 O O4 H4B . . . D 3 7.008 1.497 31.469 1 54.14 ? O4 H4B 802 A 1 
HETATM 7 C C4A H4B . . . D 3 7.723 2.301 33.52 1 51.31 ? C4A H4B 802 A 1 
HETATM 8 C C8A H4B . . . D 3 8.813 2.603 34.328 1 58.48 ? C8A H4B 802 A 1 
HETATM 9 N N5 H4B . . . D 3 6.472 2.49 34.009 1 51.55 ? N5 H4B 802 A 1 
HETATM 10 N N8 H4B . . . D 3 8.662 3.085 35.602 1 43.13 ? N8 H4B 802 A 1 
HETATM 11 C C6 H4B . . . D 3 6.313 3.435 35.117 1 50.92 ? C6 H4B 802 A 1 
HETATM 12 C C7 H4B . . . D 3 7.354 3.225 36.213 1 35.2 ? C7 H4B 802 A 1 
HETATM 13 C C9 H4B . . . D 3 4.913 3.405 35.73 1 55.76 ? C9 H4B 802 A 1 
HETATM 14 O O9 H4B . . . D 3 4.58 2.062 36.083 1 53.19 ? O9 H4B 802 A 1 
HETATM 15 C C10 H4B . . . D 3 4.824 4.279 36.982 1 58.04 ? C10 H4B 802 A 1 
HETATM 16 C C11 H4B . . . D 3 3.373 4.494 37.398 1 57.14 ? C11 H4B 802 A 1 
HETATM 17 O O10 H4B . . . D 3 5.424 5.555 36.733 1 64.7 ? O10 H4B 802 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           524 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           17 
#