data_6PN0
#
_model_server_result.job_id            DIgp7zVEYwXEm6vxgPfuFA 
_model_server_result.datetime_utc      '2024-11-12 21:05:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pn0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":801}' 
#
_entry.id    6PN0 
#
_exptl.entry_id    6PN0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PN0 
_cell.length_a            51.245 
_cell.length_b            111.183 
_cell.length_c            164.139 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PN0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 G ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc2 A SG CYS 35 A CYS 331 1_555 G ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc3 A SG CYS 119 A CYS 415 1_555 C FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc4 G ZN ZN . A ZN 805 1_555 B SG CYS 30 B CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc5 G ZN ZN . A ZN 805 1_555 B SG CYS 35 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc6 B SG CYS 119 B CYS 415 1_555 H FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 168 n n 
CHA C4D HEM doub 169 n n 
CHA HHA HEM sing 170 n n 
CHB C4A HEM sing 171 n n 
CHB C1B HEM doub 172 n n 
CHB HHB HEM sing 173 n n 
CHC C4B HEM sing 174 n n 
CHC C1C HEM doub 175 n n 
CHC HHC HEM sing 176 n n 
CHD C4C HEM doub 177 n n 
CHD C1D HEM sing 178 n n 
CHD HHD HEM sing 179 n n 
C1A C2A HEM doub 180 n y 
C1A NA HEM sing 181 n y 
C2A C3A HEM sing 182 n y 
C2A CAA HEM sing 183 n n 
C3A C4A HEM doub 184 n y 
C3A CMA HEM sing 185 n n 
C4A NA HEM sing 186 n y 
CMA HMA HEM sing 187 n n 
CMA HMAA HEM sing 188 n n 
CMA HMAB HEM sing 189 n n 
CAA CBA HEM sing 190 n n 
CAA HAA HEM sing 191 n n 
CAA HAAA HEM sing 192 n n 
CBA CGA HEM sing 193 n n 
CBA HBA HEM sing 194 n n 
CBA HBAA HEM sing 195 n n 
CGA O1A HEM doub 196 n n 
CGA O2A HEM sing 197 n n 
C1B C2B HEM sing 198 n n 
C1B NB HEM sing 199 n n 
C2B C3B HEM doub 200 n n 
C2B CMB HEM sing 201 n n 
C3B C4B HEM sing 202 n n 
C3B CAB HEM sing 203 n n 
C4B NB HEM doub 204 n n 
CMB HMB HEM sing 205 n n 
CMB HMBA HEM sing 206 n n 
CMB HMBB HEM sing 207 n n 
CAB CBB HEM doub 208 n n 
CAB HAB HEM sing 209 n n 
CBB HBB HEM sing 210 n n 
CBB HBBA HEM sing 211 n n 
C1C C2C HEM sing 212 n y 
C1C NC HEM sing 213 n y 
C2C C3C HEM doub 214 n y 
C2C CMC HEM sing 215 n n 
C3C C4C HEM sing 216 n y 
C3C CAC HEM sing 217 n n 
C4C NC HEM sing 218 n y 
CMC HMC HEM sing 219 n n 
CMC HMCA HEM sing 220 n n 
CMC HMCB HEM sing 221 n n 
CAC CBC HEM doub 222 n n 
CAC HAC HEM sing 223 n n 
CBC HBC HEM sing 224 n n 
CBC HBCA HEM sing 225 n n 
C1D C2D HEM sing 226 n n 
C1D ND HEM doub 227 n n 
C2D C3D HEM doub 228 n n 
C2D CMD HEM sing 229 n n 
C3D C4D HEM sing 230 n n 
C3D CAD HEM sing 231 n n 
C4D ND HEM sing 232 n n 
CMD HMD HEM sing 233 n n 
CMD HMDA HEM sing 234 n n 
CMD HMDB HEM sing 235 n n 
CAD CBD HEM sing 236 n n 
CAD HAD HEM sing 237 n n 
CAD HADA HEM sing 238 n n 
CBD CGD HEM sing 239 n n 
CBD HBD HEM sing 240 n n 
CBD HBDA HEM sing 241 n n 
CGD O1D HEM doub 242 n n 
CGD O2D HEM sing 243 n n 
O2A H2A HEM sing 244 n n 
O2D H2D HEM sing 245 n n 
FE NA HEM sing 246 n n 
FE NB HEM sing 247 n n 
FE NC HEM sing 248 n n 
FE ND HEM sing 249 n n 
#
_atom_sites.entry_id                     6PN0 
_atom_sites.fract_transf_matrix[1][1]    0.019514 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008994 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006092 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 801 750 HEM HEM . 
D 3 H4B A 1 802 760 H4B BH4 . 
E 4 OSJ A 1 803 800 OSJ 7M6 . 
F 5 ACT A 1 804 860 ACT ACT . 
G 6 ZN A 1 805 900 ZN ZN . 
H 2 HEM B 1 801 750 HEM HEM . 
I 3 H4B B 1 802 760 H4B BH4 . 
J 4 OSJ B 1 803 800 OSJ 7M6 . 
K 5 ACT B 1 804 860 ACT ACT . 
L 7 HOH A 1 901 70 HOH HOH . 
L 7 HOH A 2 902 78 HOH HOH . 
L 7 HOH A 3 903 72 HOH HOH . 
L 7 HOH A 4 904 65 HOH HOH . 
L 7 HOH A 5 905 74 HOH HOH . 
L 7 HOH A 6 906 77 HOH HOH . 
L 7 HOH A 7 907 71 HOH HOH . 
L 7 HOH A 8 908 1 HOH HOH . 
L 7 HOH A 9 909 36 HOH HOH . 
L 7 HOH A 10 910 76 HOH HOH . 
L 7 HOH A 11 911 6 HOH HOH . 
L 7 HOH A 12 912 4 HOH HOH . 
L 7 HOH A 13 913 21 HOH HOH . 
L 7 HOH A 14 914 75 HOH HOH . 
L 7 HOH A 15 915 15 HOH HOH . 
L 7 HOH A 16 916 12 HOH HOH . 
L 7 HOH A 17 917 13 HOH HOH . 
L 7 HOH A 18 918 14 HOH HOH . 
L 7 HOH A 19 919 10 HOH HOH . 
L 7 HOH A 20 920 79 HOH HOH . 
L 7 HOH A 21 921 16 HOH HOH . 
L 7 HOH A 22 922 8 HOH HOH . 
L 7 HOH A 23 923 63 HOH HOH . 
L 7 HOH A 24 924 69 HOH HOH . 
L 7 HOH A 25 925 73 HOH HOH . 
L 7 HOH A 26 926 3 HOH HOH . 
L 7 HOH A 27 927 68 HOH HOH . 
L 7 HOH A 28 928 5 HOH HOH . 
L 7 HOH A 29 929 66 HOH HOH . 
L 7 HOH A 30 930 67 HOH HOH . 
L 7 HOH A 31 931 9 HOH HOH . 
L 7 HOH A 32 932 64 HOH HOH . 
L 7 HOH A 33 933 22 HOH HOH . 
L 7 HOH A 34 934 11 HOH HOH . 
M 7 HOH B 1 901 46 HOH HOH . 
M 7 HOH B 2 902 57 HOH HOH . 
M 7 HOH B 3 903 33 HOH HOH . 
M 7 HOH B 4 904 30 HOH HOH . 
M 7 HOH B 5 905 28 HOH HOH . 
M 7 HOH B 6 906 32 HOH HOH . 
M 7 HOH B 7 907 54 HOH HOH . 
M 7 HOH B 8 908 7 HOH HOH . 
M 7 HOH B 9 909 37 HOH HOH . 
M 7 HOH B 10 910 31 HOH HOH . 
M 7 HOH B 11 911 55 HOH HOH . 
M 7 HOH B 12 912 29 HOH HOH . 
M 7 HOH B 13 913 44 HOH HOH . 
M 7 HOH B 14 914 34 HOH HOH . 
M 7 HOH B 15 915 47 HOH HOH . 
M 7 HOH B 16 916 26 HOH HOH . 
M 7 HOH B 17 917 60 HOH HOH . 
M 7 HOH B 18 918 27 HOH HOH . 
M 7 HOH B 19 919 40 HOH HOH . 
M 7 HOH B 20 920 2 HOH HOH . 
M 7 HOH B 21 921 56 HOH HOH . 
M 7 HOH B 22 922 50 HOH HOH . 
M 7 HOH B 23 923 42 HOH HOH . 
M 7 HOH B 24 924 23 HOH HOH . 
M 7 HOH B 25 925 18 HOH HOH . 
M 7 HOH B 26 926 61 HOH HOH . 
M 7 HOH B 27 927 53 HOH HOH . 
M 7 HOH B 28 928 59 HOH HOH . 
M 7 HOH B 29 929 58 HOH HOH . 
M 7 HOH B 30 930 43 HOH HOH . 
M 7 HOH B 31 931 20 HOH HOH . 
M 7 HOH B 32 932 24 HOH HOH . 
M 7 HOH B 33 933 35 HOH HOH . 
M 7 HOH B 34 934 48 HOH HOH . 
M 7 HOH B 35 935 49 HOH HOH . 
M 7 HOH B 36 936 52 HOH HOH . 
M 7 HOH B 37 937 17 HOH HOH . 
M 7 HOH B 38 938 19 HOH HOH . 
M 7 HOH B 39 939 38 HOH HOH . 
M 7 HOH B 40 940 62 HOH HOH . 
M 7 HOH B 41 941 25 HOH HOH . 
M 7 HOH B 42 942 45 HOH HOH . 
M 7 HOH B 43 943 41 HOH HOH . 
M 7 HOH B 44 944 39 HOH HOH . 
M 7 HOH B 45 945 51 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 2 12.694 4.778 26.602 1 52.03 ? CHA HEM 801 A 1 
HETATM 2 C CHB HEM . . . C 2 16.361 1.682 26.051 1 48.78 ? CHB HEM 801 A 1 
HETATM 3 C CHC HEM . . . C 2 17.556 3.602 21.746 1 53.43 ? CHC HEM 801 A 1 
HETATM 4 C CHD HEM . . . C 2 14.474 7.198 22.674 1 58.07 ? CHD HEM 801 A 1 
HETATM 5 C C1A HEM . . . C 2 13.53 3.711 26.81 1 47.79 ? C1A HEM 801 A 1 
HETATM 6 C C2A HEM . . . C 2 13.428 2.702 27.84 1 58.35 ? C2A HEM 801 A 1 
HETATM 7 C C3A HEM . . . C 2 14.442 1.85 27.689 1 50.35 ? C3A HEM 801 A 1 
HETATM 8 C C4A HEM . . . C 2 15.23 2.287 26.547 1 54.57 ? C4A HEM 801 A 1 
HETATM 9 C CMA HEM . . . C 2 14.718 0.614 28.573 1 52.8 ? CMA HEM 801 A 1 
HETATM 10 C CAA HEM . . . C 2 12.347 2.613 28.93 1 81.8 ? CAA HEM 801 A 1 
HETATM 11 C CBA HEM . . . C 2 11.075 2.1 28.269 1 92.83 ? CBA HEM 801 A 1 
HETATM 12 C CGA HEM . . . C 2 10.514 0.958 29.073 1 94.68 ? CGA HEM 801 A 1 
HETATM 13 O O1A HEM . . . C 2 11.296 0.253 29.761 1 96.18 ? O1A HEM 801 A 1 
HETATM 14 O O2A HEM . . . C 2 9.279 0.744 29.012 1 92.79 ? O2A HEM 801 A 1 
HETATM 15 C C1B HEM . . . C 2 16.98 1.925 24.853 1 52.37 ? C1B HEM 801 A 1 
HETATM 16 C C2B HEM . . . C 2 18.085 1.159 24.325 1 59.71 ? C2B HEM 801 A 1 
HETATM 17 C C3B HEM . . . C 2 18.435 1.674 23.149 1 66.18 ? C3B HEM 801 A 1 
HETATM 18 C C4B HEM . . . C 2 17.546 2.799 22.871 1 53.69 ? C4B HEM 801 A 1 
HETATM 19 C CMB HEM . . . C 2 18.774 -0.043 24.997 1 57.2 ? CMB HEM 801 A 1 
HETATM 20 C CAB HEM . . . C 2 19.587 1.095 22.289 1 53.86 ? CAB HEM 801 A 1 
HETATM 21 C CBB HEM . . . C 2 20.136 1.793 21.291 1 64.22 ? CBB HEM 801 A 1 
HETATM 22 C C1C HEM . . . C 2 16.784 4.729 21.556 1 52.83 ? C1C HEM 801 A 1 
HETATM 23 C C2C HEM . . . C 2 16.659 5.506 20.337 1 67.14 ? C2C HEM 801 A 1 
HETATM 24 C C3C HEM . . . C 2 15.793 6.512 20.598 1 59.61 ? C3C HEM 801 A 1 
HETATM 25 C C4C HEM . . . C 2 15.346 6.382 21.975 1 55.15 ? C4C HEM 801 A 1 
HETATM 26 C CMC HEM . . . C 2 17.408 5.146 19.02 1 36.08 ? CMC HEM 801 A 1 
HETATM 27 C CAC HEM . . . C 2 15.297 7.646 19.681 1 50.29 ? CAC HEM 801 A 1 
HETATM 28 C CBC HEM . . . C 2 15.722 7.828 18.423 1 64.15 ? CBC HEM 801 A 1 
HETATM 29 C C1D HEM . . . C 2 13.672 6.849 23.76 1 49.69 ? C1D HEM 801 A 1 
HETATM 30 C C2D HEM . . . C 2 12.494 7.578 24.165 1 49.7 ? C2D HEM 801 A 1 
HETATM 31 C C3D HEM . . . C 2 11.942 6.825 25.386 1 63.38 ? C3D HEM 801 A 1 
HETATM 32 C C4D HEM . . . C 2 12.841 5.711 25.593 1 62.06 ? C4D HEM 801 A 1 
HETATM 33 C CMD HEM . . . C 2 11.929 8.861 23.505 1 60.35 ? CMD HEM 801 A 1 
HETATM 34 C CAD HEM . . . C 2 10.696 7.167 26.232 1 49.95 ? CAD HEM 801 A 1 
HETATM 35 C CBD HEM . . . C 2 10.856 8.593 26.726 1 76.13 ? CBD HEM 801 A 1 
HETATM 36 C CGD HEM . . . C 2 9.581 9.147 27.298 1 86.6 ? CGD HEM 801 A 1 
HETATM 37 O O1D HEM . . . C 2 9.598 10.325 27.74 1 75.42 ? O1D HEM 801 A 1 
HETATM 38 O O2D HEM . . . C 2 8.561 8.414 27.309 1 96.26 ? O2D HEM 801 A 1 
HETATM 39 N NA HEM . . . C 2 14.637 3.418 26.03 1 49.95 ? NA HEM 801 A 1 
HETATM 40 N NB HEM . . . C 2 16.675 2.93 23.945 1 56.68 ? NB HEM 801 A 1 
HETATM 41 N NC HEM . . . C 2 15.971 5.292 22.51 1 52.49 ? NC HEM 801 A 1 
HETATM 42 N ND HEM . . . C 2 13.849 5.759 24.624 1 43.26 ? ND HEM 801 A 1 
HETATM 43 FE FE HEM . . . C 2 15.566 4.625 24.536 1 49.74 ? FE HEM 801 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           349 
_model_server_stats.encode_time_ms          22 
_model_server_stats.element_count           43 
#