data_6PN0
#
_model_server_result.job_id            RWLPisA7FE3331Rjl99vHQ 
_model_server_result.datetime_utc      '2024-11-28 18:10:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pn0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":801}' 
#
_entry.id    6PN0 
#
_exptl.entry_id    6PN0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PN0 
_cell.length_a            51.245 
_cell.length_b            111.183 
_cell.length_c            164.139 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PN0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 G ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc2 A SG CYS 35 A CYS 331 1_555 G ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc3 A SG CYS 119 A CYS 415 1_555 C FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc4 G ZN ZN . A ZN 805 1_555 B SG CYS 30 B CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc5 G ZN ZN . A ZN 805 1_555 B SG CYS 35 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc6 B SG CYS 119 B CYS 415 1_555 H FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 168 n n 
CHA C4D HEM doub 169 n n 
CHA HHA HEM sing 170 n n 
CHB C4A HEM sing 171 n n 
CHB C1B HEM doub 172 n n 
CHB HHB HEM sing 173 n n 
CHC C4B HEM sing 174 n n 
CHC C1C HEM doub 175 n n 
CHC HHC HEM sing 176 n n 
CHD C4C HEM doub 177 n n 
CHD C1D HEM sing 178 n n 
CHD HHD HEM sing 179 n n 
C1A C2A HEM doub 180 n y 
C1A NA HEM sing 181 n y 
C2A C3A HEM sing 182 n y 
C2A CAA HEM sing 183 n n 
C3A C4A HEM doub 184 n y 
C3A CMA HEM sing 185 n n 
C4A NA HEM sing 186 n y 
CMA HMA HEM sing 187 n n 
CMA HMAA HEM sing 188 n n 
CMA HMAB HEM sing 189 n n 
CAA CBA HEM sing 190 n n 
CAA HAA HEM sing 191 n n 
CAA HAAA HEM sing 192 n n 
CBA CGA HEM sing 193 n n 
CBA HBA HEM sing 194 n n 
CBA HBAA HEM sing 195 n n 
CGA O1A HEM doub 196 n n 
CGA O2A HEM sing 197 n n 
C1B C2B HEM sing 198 n n 
C1B NB HEM sing 199 n n 
C2B C3B HEM doub 200 n n 
C2B CMB HEM sing 201 n n 
C3B C4B HEM sing 202 n n 
C3B CAB HEM sing 203 n n 
C4B NB HEM doub 204 n n 
CMB HMB HEM sing 205 n n 
CMB HMBA HEM sing 206 n n 
CMB HMBB HEM sing 207 n n 
CAB CBB HEM doub 208 n n 
CAB HAB HEM sing 209 n n 
CBB HBB HEM sing 210 n n 
CBB HBBA HEM sing 211 n n 
C1C C2C HEM sing 212 n y 
C1C NC HEM sing 213 n y 
C2C C3C HEM doub 214 n y 
C2C CMC HEM sing 215 n n 
C3C C4C HEM sing 216 n y 
C3C CAC HEM sing 217 n n 
C4C NC HEM sing 218 n y 
CMC HMC HEM sing 219 n n 
CMC HMCA HEM sing 220 n n 
CMC HMCB HEM sing 221 n n 
CAC CBC HEM doub 222 n n 
CAC HAC HEM sing 223 n n 
CBC HBC HEM sing 224 n n 
CBC HBCA HEM sing 225 n n 
C1D C2D HEM sing 226 n n 
C1D ND HEM doub 227 n n 
C2D C3D HEM doub 228 n n 
C2D CMD HEM sing 229 n n 
C3D C4D HEM sing 230 n n 
C3D CAD HEM sing 231 n n 
C4D ND HEM sing 232 n n 
CMD HMD HEM sing 233 n n 
CMD HMDA HEM sing 234 n n 
CMD HMDB HEM sing 235 n n 
CAD CBD HEM sing 236 n n 
CAD HAD HEM sing 237 n n 
CAD HADA HEM sing 238 n n 
CBD CGD HEM sing 239 n n 
CBD HBD HEM sing 240 n n 
CBD HBDA HEM sing 241 n n 
CGD O1D HEM doub 242 n n 
CGD O2D HEM sing 243 n n 
O2A H2A HEM sing 244 n n 
O2D H2D HEM sing 245 n n 
FE NA HEM sing 246 n n 
FE NB HEM sing 247 n n 
FE NC HEM sing 248 n n 
FE ND HEM sing 249 n n 
#
_atom_sites.entry_id                     6PN0 
_atom_sites.fract_transf_matrix[1][1]    0.019514 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008994 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006092 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 801 750 HEM HEM . 
D 3 H4B A 1 802 760 H4B BH4 . 
E 4 OSJ A 1 803 800 OSJ 7M6 . 
F 5 ACT A 1 804 860 ACT ACT . 
G 6 ZN A 1 805 900 ZN ZN . 
H 2 HEM B 1 801 750 HEM HEM . 
I 3 H4B B 1 802 760 H4B BH4 . 
J 4 OSJ B 1 803 800 OSJ 7M6 . 
K 5 ACT B 1 804 860 ACT ACT . 
L 7 HOH A 1 901 70 HOH HOH . 
L 7 HOH A 2 902 78 HOH HOH . 
L 7 HOH A 3 903 72 HOH HOH . 
L 7 HOH A 4 904 65 HOH HOH . 
L 7 HOH A 5 905 74 HOH HOH . 
L 7 HOH A 6 906 77 HOH HOH . 
L 7 HOH A 7 907 71 HOH HOH . 
L 7 HOH A 8 908 1 HOH HOH . 
L 7 HOH A 9 909 36 HOH HOH . 
L 7 HOH A 10 910 76 HOH HOH . 
L 7 HOH A 11 911 6 HOH HOH . 
L 7 HOH A 12 912 4 HOH HOH . 
L 7 HOH A 13 913 21 HOH HOH . 
L 7 HOH A 14 914 75 HOH HOH . 
L 7 HOH A 15 915 15 HOH HOH . 
L 7 HOH A 16 916 12 HOH HOH . 
L 7 HOH A 17 917 13 HOH HOH . 
L 7 HOH A 18 918 14 HOH HOH . 
L 7 HOH A 19 919 10 HOH HOH . 
L 7 HOH A 20 920 79 HOH HOH . 
L 7 HOH A 21 921 16 HOH HOH . 
L 7 HOH A 22 922 8 HOH HOH . 
L 7 HOH A 23 923 63 HOH HOH . 
L 7 HOH A 24 924 69 HOH HOH . 
L 7 HOH A 25 925 73 HOH HOH . 
L 7 HOH A 26 926 3 HOH HOH . 
L 7 HOH A 27 927 68 HOH HOH . 
L 7 HOH A 28 928 5 HOH HOH . 
L 7 HOH A 29 929 66 HOH HOH . 
L 7 HOH A 30 930 67 HOH HOH . 
L 7 HOH A 31 931 9 HOH HOH . 
L 7 HOH A 32 932 64 HOH HOH . 
L 7 HOH A 33 933 22 HOH HOH . 
L 7 HOH A 34 934 11 HOH HOH . 
M 7 HOH B 1 901 46 HOH HOH . 
M 7 HOH B 2 902 57 HOH HOH . 
M 7 HOH B 3 903 33 HOH HOH . 
M 7 HOH B 4 904 30 HOH HOH . 
M 7 HOH B 5 905 28 HOH HOH . 
M 7 HOH B 6 906 32 HOH HOH . 
M 7 HOH B 7 907 54 HOH HOH . 
M 7 HOH B 8 908 7 HOH HOH . 
M 7 HOH B 9 909 37 HOH HOH . 
M 7 HOH B 10 910 31 HOH HOH . 
M 7 HOH B 11 911 55 HOH HOH . 
M 7 HOH B 12 912 29 HOH HOH . 
M 7 HOH B 13 913 44 HOH HOH . 
M 7 HOH B 14 914 34 HOH HOH . 
M 7 HOH B 15 915 47 HOH HOH . 
M 7 HOH B 16 916 26 HOH HOH . 
M 7 HOH B 17 917 60 HOH HOH . 
M 7 HOH B 18 918 27 HOH HOH . 
M 7 HOH B 19 919 40 HOH HOH . 
M 7 HOH B 20 920 2 HOH HOH . 
M 7 HOH B 21 921 56 HOH HOH . 
M 7 HOH B 22 922 50 HOH HOH . 
M 7 HOH B 23 923 42 HOH HOH . 
M 7 HOH B 24 924 23 HOH HOH . 
M 7 HOH B 25 925 18 HOH HOH . 
M 7 HOH B 26 926 61 HOH HOH . 
M 7 HOH B 27 927 53 HOH HOH . 
M 7 HOH B 28 928 59 HOH HOH . 
M 7 HOH B 29 929 58 HOH HOH . 
M 7 HOH B 30 930 43 HOH HOH . 
M 7 HOH B 31 931 20 HOH HOH . 
M 7 HOH B 32 932 24 HOH HOH . 
M 7 HOH B 33 933 35 HOH HOH . 
M 7 HOH B 34 934 48 HOH HOH . 
M 7 HOH B 35 935 49 HOH HOH . 
M 7 HOH B 36 936 52 HOH HOH . 
M 7 HOH B 37 937 17 HOH HOH . 
M 7 HOH B 38 938 19 HOH HOH . 
M 7 HOH B 39 939 38 HOH HOH . 
M 7 HOH B 40 940 62 HOH HOH . 
M 7 HOH B 41 941 25 HOH HOH . 
M 7 HOH B 42 942 45 HOH HOH . 
M 7 HOH B 43 943 41 HOH HOH . 
M 7 HOH B 44 944 39 HOH HOH . 
M 7 HOH B 45 945 51 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . H 2 10.555 4.098 55.452 1 54.19 ? CHA HEM 801 B 1 
HETATM 2 C CHB HEM . . . H 2 8.719 -0.358 55.942 1 58.56 ? CHB HEM 801 B 1 
HETATM 3 C CHC HEM . . . H 2 6.874 0.816 60.295 1 55.76 ? CHC HEM 801 B 1 
HETATM 4 C CHD HEM . . . H 2 8.057 5.443 59.431 1 60.73 ? CHD HEM 801 B 1 
HETATM 5 C C1A HEM . . . H 2 10.315 2.757 55.266 1 65.25 ? C1A HEM 801 B 1 
HETATM 6 C C2A HEM . . . H 2 10.949 1.898 54.286 1 66.17 ? C2A HEM 801 B 1 
HETATM 7 C C3A HEM . . . H 2 10.451 0.666 54.423 1 66.39 ? C3A HEM 801 B 1 
HETATM 8 C C4A HEM . . . H 2 9.467 0.703 55.486 1 54.38 ? C4A HEM 801 B 1 
HETATM 9 C CMA HEM . . . H 2 10.846 -0.571 53.57 1 46.06 ? CMA HEM 801 B 1 
HETATM 10 C CAA HEM . . . H 2 12.028 2.315 53.266 1 61.51 ? CAA HEM 801 B 1 
HETATM 11 C CBA HEM . . . H 2 13.382 2.183 53.953 1 69.01 ? CBA HEM 801 B 1 
HETATM 12 C CGA HEM . . . H 2 14.435 1.656 53.012 1 83.31 ? CGA HEM 801 B 1 
HETATM 13 O O1A HEM . . . H 2 14.249 0.544 52.436 1 82.66 ? O1A HEM 801 B 1 
HETATM 14 O O2A HEM . . . H 2 15.479 2.346 52.869 1 78.87 ? O2A HEM 801 B 1 
HETATM 15 C C1B HEM . . . H 2 8.089 -0.444 57.168 1 60.55 ? C1B HEM 801 B 1 
HETATM 16 C C2B HEM . . . H 2 7.473 -1.637 57.715 1 61.8 ? C2B HEM 801 B 1 
HETATM 17 C C3B HEM . . . H 2 6.958 -1.332 58.912 1 66.83 ? C3B HEM 801 B 1 
HETATM 18 C C4B HEM . . . H 2 7.224 0.083 59.17 1 66.61 ? C4B HEM 801 B 1 
HETATM 19 C CMB HEM . . . H 2 7.429 -3.018 57.016 1 50.51 ? CMB HEM 801 B 1 
HETATM 20 C CAB HEM . . . H 2 6.218 -2.353 59.812 1 54 ? CAB HEM 801 B 1 
HETATM 21 C CBB HEM . . . H 2 5.69 -2.049 61.003 1 70.66 ? CBB HEM 801 B 1 
HETATM 22 C C1C HEM . . . H 2 7.09 2.17 60.481 1 51.8 ? C1C HEM 801 B 1 
HETATM 23 C C2C HEM . . . H 2 6.894 2.924 61.702 1 56.31 ? C2C HEM 801 B 1 
HETATM 24 C C3C HEM . . . H 2 7.235 4.203 61.458 1 60.3 ? C3C HEM 801 B 1 
HETATM 25 C C4C HEM . . . H 2 7.649 4.295 60.075 1 57.03 ? C4C HEM 801 B 1 
HETATM 26 C CMC HEM . . . H 2 6.4 2.326 63.041 1 52.22 ? CMC HEM 801 B 1 
HETATM 27 C CAC HEM . . . H 2 7.195 5.432 62.405 1 58.51 ? CAC HEM 801 B 1 
HETATM 28 C CBC HEM . . . H 2 6.52 5.474 63.56 1 57.31 ? CBC HEM 801 B 1 
HETATM 29 C C1D HEM . . . H 2 8.91 5.512 58.356 1 59.22 ? C1D HEM 801 B 1 
HETATM 30 C C2D HEM . . . H 2 9.681 6.675 57.973 1 56.71 ? C2D HEM 801 B 1 
HETATM 31 C C3D HEM . . . H 2 10.464 6.237 56.719 1 61.5 ? C3D HEM 801 B 1 
HETATM 32 C C4D HEM . . . H 2 10.078 4.866 56.484 1 54.03 ? C4D HEM 801 B 1 
HETATM 33 C CMD HEM . . . H 2 9.698 8.043 58.687 1 57.87 ? CMD HEM 801 B 1 
HETATM 34 C CAD HEM . . . H 2 11.458 7.044 55.855 1 40.66 ? CAD HEM 801 B 1 
HETATM 35 C CBD HEM . . . H 2 10.722 8.288 55.394 1 63.79 ? CBD HEM 801 B 1 
HETATM 36 C CGD HEM . . . H 2 11.707 9.336 54.957 1 75.05 ? CGD HEM 801 B 1 
HETATM 37 O O1D HEM . . . H 2 11.268 10.469 54.635 1 76.95 ? O1D HEM 801 B 1 
HETATM 38 O O2D HEM . . . H 2 12.924 9.018 54.942 1 74.88 ? O2D HEM 801 B 1 
HETATM 39 N NA HEM . . . H 2 9.412 1.995 55.979 1 57.33 ? NA HEM 801 B 1 
HETATM 40 N NB HEM . . . H 2 7.91 0.585 58.07 1 51.76 ? NB HEM 801 B 1 
HETATM 41 N NC HEM . . . H 2 7.551 3.046 59.517 1 64.53 ? NC HEM 801 B 1 
HETATM 42 N ND HEM . . . H 2 9.162 4.476 57.455 1 48.81 ? ND HEM 801 B 1 
HETATM 43 FE FE HEM . . . H 2 8.238 2.616 57.625 1 50.97 ? FE HEM 801 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#