data_6PN0 # _model_server_result.job_id lDpKxPyu_js7nNf7eDg5uA _model_server_result.datetime_utc '2024-11-12 21:03:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pn0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 6PN0 # _exptl.entry_id 6PN0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7,8-TETRAHYDROBIOPTERIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PN0 _cell.length_a 51.245 _cell.length_b 111.183 _cell.length_c 164.139 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PN0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 G ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc2 A SG CYS 35 A CYS 331 1_555 G ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc3 A SG CYS 119 A CYS 415 1_555 C FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc4 G ZN ZN . A ZN 805 1_555 B SG CYS 30 B CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc5 G ZN ZN . A ZN 805 1_555 B SG CYS 35 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc6 B SG CYS 119 B CYS 415 1_555 H FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? # _chem_comp.formula 'C9 H15 N5 O3' _chem_comp.formula_weight 241.247 _chem_comp.id H4B _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7,8-TETRAHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 H4B doub 135 n y N1 C8A H4B sing 136 n y C2 N2 H4B sing 137 n n C2 N3 H4B sing 138 n y N2 HN21 H4B sing 139 n n N2 HN22 H4B sing 140 n n N3 C4 H4B sing 141 n y N3 HN3 H4B sing 142 n n C4 O4 H4B doub 143 n n C4 C4A H4B sing 144 n y C4A C8A H4B doub 145 n y C4A N5 H4B sing 146 n n C8A N8 H4B sing 147 n n N5 C6 H4B sing 148 n n N5 HN5 H4B sing 149 n n N8 C7 H4B sing 150 n n N8 HN8 H4B sing 151 n n C6 C7 H4B sing 152 n n C6 C9 H4B sing 153 n n C6 H6 H4B sing 154 n n C7 H71 H4B sing 155 n n C7 H72 H4B sing 156 n n C9 O9 H4B sing 157 n n C9 C10 H4B sing 158 n n C9 H9 H4B sing 159 n n O9 HO9 H4B sing 160 n n C10 C11 H4B sing 161 n n C10 O10 H4B sing 162 n n C10 H10 H4B sing 163 n n C11 H111 H4B sing 164 n n C11 H112 H4B sing 165 n n C11 H113 H4B sing 166 n n O10 HO0 H4B sing 167 n n # _atom_sites.entry_id 6PN0 _atom_sites.fract_transf_matrix[1][1] 0.019514 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008994 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006092 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 801 750 HEM HEM . D 3 H4B A 1 802 760 H4B BH4 . E 4 OSJ A 1 803 800 OSJ 7M6 . F 5 ACT A 1 804 860 ACT ACT . G 6 ZN A 1 805 900 ZN ZN . H 2 HEM B 1 801 750 HEM HEM . I 3 H4B B 1 802 760 H4B BH4 . J 4 OSJ B 1 803 800 OSJ 7M6 . K 5 ACT B 1 804 860 ACT ACT . L 7 HOH A 1 901 70 HOH HOH . L 7 HOH A 2 902 78 HOH HOH . L 7 HOH A 3 903 72 HOH HOH . L 7 HOH A 4 904 65 HOH HOH . L 7 HOH A 5 905 74 HOH HOH . L 7 HOH A 6 906 77 HOH HOH . L 7 HOH A 7 907 71 HOH HOH . L 7 HOH A 8 908 1 HOH HOH . L 7 HOH A 9 909 36 HOH HOH . L 7 HOH A 10 910 76 HOH HOH . L 7 HOH A 11 911 6 HOH HOH . L 7 HOH A 12 912 4 HOH HOH . L 7 HOH A 13 913 21 HOH HOH . L 7 HOH A 14 914 75 HOH HOH . L 7 HOH A 15 915 15 HOH HOH . L 7 HOH A 16 916 12 HOH HOH . L 7 HOH A 17 917 13 HOH HOH . L 7 HOH A 18 918 14 HOH HOH . L 7 HOH A 19 919 10 HOH HOH . L 7 HOH A 20 920 79 HOH HOH . L 7 HOH A 21 921 16 HOH HOH . L 7 HOH A 22 922 8 HOH HOH . L 7 HOH A 23 923 63 HOH HOH . L 7 HOH A 24 924 69 HOH HOH . L 7 HOH A 25 925 73 HOH HOH . L 7 HOH A 26 926 3 HOH HOH . L 7 HOH A 27 927 68 HOH HOH . L 7 HOH A 28 928 5 HOH HOH . L 7 HOH A 29 929 66 HOH HOH . L 7 HOH A 30 930 67 HOH HOH . L 7 HOH A 31 931 9 HOH HOH . L 7 HOH A 32 932 64 HOH HOH . L 7 HOH A 33 933 22 HOH HOH . L 7 HOH A 34 934 11 HOH HOH . M 7 HOH B 1 901 46 HOH HOH . M 7 HOH B 2 902 57 HOH HOH . M 7 HOH B 3 903 33 HOH HOH . M 7 HOH B 4 904 30 HOH HOH . M 7 HOH B 5 905 28 HOH HOH . M 7 HOH B 6 906 32 HOH HOH . M 7 HOH B 7 907 54 HOH HOH . M 7 HOH B 8 908 7 HOH HOH . M 7 HOH B 9 909 37 HOH HOH . M 7 HOH B 10 910 31 HOH HOH . M 7 HOH B 11 911 55 HOH HOH . M 7 HOH B 12 912 29 HOH HOH . M 7 HOH B 13 913 44 HOH HOH . M 7 HOH B 14 914 34 HOH HOH . M 7 HOH B 15 915 47 HOH HOH . M 7 HOH B 16 916 26 HOH HOH . M 7 HOH B 17 917 60 HOH HOH . M 7 HOH B 18 918 27 HOH HOH . M 7 HOH B 19 919 40 HOH HOH . M 7 HOH B 20 920 2 HOH HOH . M 7 HOH B 21 921 56 HOH HOH . M 7 HOH B 22 922 50 HOH HOH . M 7 HOH B 23 923 42 HOH HOH . M 7 HOH B 24 924 23 HOH HOH . M 7 HOH B 25 925 18 HOH HOH . M 7 HOH B 26 926 61 HOH HOH . M 7 HOH B 27 927 53 HOH HOH . M 7 HOH B 28 928 59 HOH HOH . M 7 HOH B 29 929 58 HOH HOH . M 7 HOH B 30 930 43 HOH HOH . M 7 HOH B 31 931 20 HOH HOH . M 7 HOH B 32 932 24 HOH HOH . M 7 HOH B 33 933 35 HOH HOH . M 7 HOH B 34 934 48 HOH HOH . M 7 HOH B 35 935 49 HOH HOH . M 7 HOH B 36 936 52 HOH HOH . M 7 HOH B 37 937 17 HOH HOH . M 7 HOH B 38 938 19 HOH HOH . M 7 HOH B 39 939 38 HOH HOH . M 7 HOH B 40 940 62 HOH HOH . M 7 HOH B 41 941 25 HOH HOH . M 7 HOH B 42 942 45 HOH HOH . M 7 HOH B 43 943 41 HOH HOH . M 7 HOH B 44 944 39 HOH HOH . M 7 HOH B 45 945 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H4B . . . D 3 9.786 2.423 33.81 1 99.63 ? N1 H4B 802 A 1 HETATM 2 C C2 H4B . . . D 3 9.953 1.987 32.542 1 104.56 ? C2 H4B 802 A 1 HETATM 3 N N2 H4B . . . D 3 11.21 1.811 32.061 1 107.58 ? N2 H4B 802 A 1 HETATM 4 N N3 H4B . . . D 3 8.878 1.73 31.761 1 100.88 ? N3 H4B 802 A 1 HETATM 5 C C4 H4B . . . D 3 7.622 1.901 32.236 1 93.56 ? C4 H4B 802 A 1 HETATM 6 O O4 H4B . . . D 3 6.64 1.66 31.495 1 95.12 ? O4 H4B 802 A 1 HETATM 7 C C4A H4B . . . D 3 7.441 2.355 33.534 1 83.74 ? C4A H4B 802 A 1 HETATM 8 C C8A H4B . . . D 3 8.55 2.611 34.319 1 84.44 ? C8A H4B 802 A 1 HETATM 9 N N5 H4B . . . D 3 6.212 2.552 34.058 1 75.93 ? N5 H4B 802 A 1 HETATM 10 N N8 H4B . . . D 3 8.416 3.05 35.596 1 65.38 ? N8 H4B 802 A 1 HETATM 11 C C6 H4B . . . D 3 6.109 3.518 35.147 1 70.66 ? C6 H4B 802 A 1 HETATM 12 C C7 H4B . . . D 3 7.115 3.176 36.234 1 60.42 ? C7 H4B 802 A 1 HETATM 13 C C9 H4B . . . D 3 4.707 3.567 35.737 1 64.4 ? C9 H4B 802 A 1 HETATM 14 O O9 H4B . . . D 3 4.376 2.252 36.179 1 73.41 ? O9 H4B 802 A 1 HETATM 15 C C10 H4B . . . D 3 4.636 4.483 36.948 1 58.07 ? C10 H4B 802 A 1 HETATM 16 C C11 H4B . . . D 3 3.185 4.749 37.318 1 58.84 ? C11 H4B 802 A 1 HETATM 17 O O10 H4B . . . D 3 5.288 5.722 36.674 1 75.14 ? O10 H4B 802 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 17 #