data_6PN1 # _model_server_result.job_id sVMJQKK7WGkhXOlhlxVy8g _model_server_result.datetime_utc '2024-11-12 22:42:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pn1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 6PN1 # _exptl.entry_id 6PN1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7,8-TETRAHYDROBIOPTERIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PN1 _cell.length_a 51.665 _cell.length_b 112.239 _cell.length_c 163.966 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PN1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 K ZN ZN . B ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc2 A SG CYS 35 A CYS 331 1_555 K ZN ZN . B ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc3 A SG CYS 119 A CYS 415 1_555 C FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc4 B SG CYS 30 B CYS 326 1_555 K ZN ZN . B ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc5 B SG CYS 35 B CYS 331 1_555 K ZN ZN . B ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc6 B SG CYS 119 B CYS 415 1_555 G FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? # _chem_comp.formula 'C9 H15 N5 O3' _chem_comp.formula_weight 241.247 _chem_comp.id H4B _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7,8-TETRAHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 H4B doub 135 n y N1 C8A H4B sing 136 n y C2 N2 H4B sing 137 n n C2 N3 H4B sing 138 n y N2 HN21 H4B sing 139 n n N2 HN22 H4B sing 140 n n N3 C4 H4B sing 141 n y N3 HN3 H4B sing 142 n n C4 O4 H4B doub 143 n n C4 C4A H4B sing 144 n y C4A C8A H4B doub 145 n y C4A N5 H4B sing 146 n n C8A N8 H4B sing 147 n n N5 C6 H4B sing 148 n n N5 HN5 H4B sing 149 n n N8 C7 H4B sing 150 n n N8 HN8 H4B sing 151 n n C6 C7 H4B sing 152 n n C6 C9 H4B sing 153 n n C6 H6 H4B sing 154 n n C7 H71 H4B sing 155 n n C7 H72 H4B sing 156 n n C9 O9 H4B sing 157 n n C9 C10 H4B sing 158 n n C9 H9 H4B sing 159 n n O9 HO9 H4B sing 160 n n C10 C11 H4B sing 161 n n C10 O10 H4B sing 162 n n C10 H10 H4B sing 163 n n C11 H111 H4B sing 164 n n C11 H112 H4B sing 165 n n C11 H113 H4B sing 166 n n O10 HO0 H4B sing 167 n n # _atom_sites.entry_id 6PN1 _atom_sites.fract_transf_matrix[1][1] 0.019355 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00891 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006099 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 801 750 HEM HEM . D 3 H4B A 1 802 760 H4B BH4 . E 4 OSG A 1 803 800 OSG 5M1 . F 5 ACT A 1 804 860 ACT ACT . G 2 HEM B 1 801 750 HEM HEM . H 3 H4B B 1 802 760 H4B BH4 . I 4 OSG B 1 803 800 OSG 5M1 . J 5 ACT B 1 804 860 ACT ACT . K 6 ZN B 1 805 900 ZN ZN . L 7 HOH A 1 901 83 HOH HOH . L 7 HOH A 2 902 64 HOH HOH . L 7 HOH A 3 903 21 HOH HOH . L 7 HOH A 4 904 11 HOH HOH . L 7 HOH A 5 905 1 HOH HOH . L 7 HOH A 6 906 75 HOH HOH . L 7 HOH A 7 907 182 HOH HOH . L 7 HOH A 8 908 66 HOH HOH . L 7 HOH A 9 909 175 HOH HOH . L 7 HOH A 10 910 39 HOH HOH . L 7 HOH A 11 911 34 HOH HOH . L 7 HOH A 12 912 190 HOH HOH . L 7 HOH A 13 913 73 HOH HOH . L 7 HOH A 14 914 76 HOH HOH . L 7 HOH A 15 915 25 HOH HOH . L 7 HOH A 16 916 174 HOH HOH . L 7 HOH A 17 917 45 HOH HOH . L 7 HOH A 18 918 16 HOH HOH . L 7 HOH A 19 919 85 HOH HOH . L 7 HOH A 20 920 10 HOH HOH . L 7 HOH A 21 921 89 HOH HOH . L 7 HOH A 22 922 65 HOH HOH . L 7 HOH A 23 923 72 HOH HOH . L 7 HOH A 24 924 50 HOH HOH . L 7 HOH A 25 925 88 HOH HOH . L 7 HOH A 26 926 56 HOH HOH . L 7 HOH A 27 927 27 HOH HOH . L 7 HOH A 28 928 69 HOH HOH . L 7 HOH A 29 929 54 HOH HOH . L 7 HOH A 30 930 20 HOH HOH . L 7 HOH A 31 931 71 HOH HOH . L 7 HOH A 32 932 19 HOH HOH . L 7 HOH A 33 933 188 HOH HOH . L 7 HOH A 34 934 17 HOH HOH . L 7 HOH A 35 935 49 HOH HOH . L 7 HOH A 36 936 79 HOH HOH . L 7 HOH A 37 937 187 HOH HOH . L 7 HOH A 38 938 44 HOH HOH . L 7 HOH A 39 939 53 HOH HOH . L 7 HOH A 40 940 84 HOH HOH . L 7 HOH A 41 941 80 HOH HOH . L 7 HOH A 42 942 9 HOH HOH . L 7 HOH A 43 943 58 HOH HOH . L 7 HOH A 44 944 173 HOH HOH . L 7 HOH A 45 945 12 HOH HOH . L 7 HOH A 46 946 48 HOH HOH . L 7 HOH A 47 947 14 HOH HOH . L 7 HOH A 48 948 180 HOH HOH . L 7 HOH A 49 949 43 HOH HOH . L 7 HOH A 50 950 70 HOH HOH . L 7 HOH A 51 951 52 HOH HOH . L 7 HOH A 52 952 68 HOH HOH . L 7 HOH A 53 953 62 HOH HOH . L 7 HOH A 54 954 82 HOH HOH . L 7 HOH A 55 955 24 HOH HOH . L 7 HOH A 56 956 177 HOH HOH . L 7 HOH A 57 957 67 HOH HOH . L 7 HOH A 58 958 42 HOH HOH . L 7 HOH A 59 959 22 HOH HOH . L 7 HOH A 60 960 74 HOH HOH . L 7 HOH A 61 961 46 HOH HOH . L 7 HOH A 62 962 13 HOH HOH . L 7 HOH A 63 963 81 HOH HOH . L 7 HOH A 64 964 61 HOH HOH . L 7 HOH A 65 965 178 HOH HOH . L 7 HOH A 66 966 176 HOH HOH . L 7 HOH A 67 967 15 HOH HOH . L 7 HOH A 68 968 183 HOH HOH . L 7 HOH A 69 969 33 HOH HOH . L 7 HOH A 70 970 77 HOH HOH . L 7 HOH A 71 971 18 HOH HOH . L 7 HOH A 72 972 181 HOH HOH . L 7 HOH A 73 973 184 HOH HOH . L 7 HOH A 74 974 86 HOH HOH . L 7 HOH A 75 975 179 HOH HOH . L 7 HOH A 76 976 31 HOH HOH . L 7 HOH A 77 977 63 HOH HOH . L 7 HOH A 78 978 32 HOH HOH . L 7 HOH A 79 979 47 HOH HOH . L 7 HOH A 80 980 51 HOH HOH . L 7 HOH A 81 981 78 HOH HOH . L 7 HOH A 82 982 23 HOH HOH . L 7 HOH A 83 983 35 HOH HOH . L 7 HOH A 84 984 55 HOH HOH . M 7 HOH B 1 901 142 HOH HOH . M 7 HOH B 2 902 159 HOH HOH . M 7 HOH B 3 903 195 HOH HOH . M 7 HOH B 4 904 110 HOH HOH . M 7 HOH B 5 905 104 HOH HOH . M 7 HOH B 6 906 170 HOH HOH . M 7 HOH B 7 907 125 HOH HOH . M 7 HOH B 8 908 36 HOH HOH . M 7 HOH B 9 909 26 HOH HOH . M 7 HOH B 10 910 2 HOH HOH . M 7 HOH B 11 911 28 HOH HOH . M 7 HOH B 12 912 146 HOH HOH . M 7 HOH B 13 913 130 HOH HOH . M 7 HOH B 14 914 127 HOH HOH . M 7 HOH B 15 915 99 HOH HOH . M 7 HOH B 16 916 143 HOH HOH . M 7 HOH B 17 917 30 HOH HOH . M 7 HOH B 18 918 118 HOH HOH . M 7 HOH B 19 919 164 HOH HOH . M 7 HOH B 20 920 37 HOH HOH . M 7 HOH B 21 921 4 HOH HOH . M 7 HOH B 22 922 108 HOH HOH . M 7 HOH B 23 923 6 HOH HOH . M 7 HOH B 24 924 155 HOH HOH . M 7 HOH B 25 925 29 HOH HOH . M 7 HOH B 26 926 107 HOH HOH . M 7 HOH B 27 927 141 HOH HOH . M 7 HOH B 28 928 161 HOH HOH . M 7 HOH B 29 929 59 HOH HOH . M 7 HOH B 30 930 41 HOH HOH . M 7 HOH B 31 931 144 HOH HOH . M 7 HOH B 32 932 132 HOH HOH . M 7 HOH B 33 933 95 HOH HOH . M 7 HOH B 34 934 147 HOH HOH . M 7 HOH B 35 935 126 HOH HOH . M 7 HOH B 36 936 129 HOH HOH . M 7 HOH B 37 937 135 HOH HOH . M 7 HOH B 38 938 94 HOH HOH . M 7 HOH B 39 939 193 HOH HOH . M 7 HOH B 40 940 123 HOH HOH . M 7 HOH B 41 941 145 HOH HOH . M 7 HOH B 42 942 117 HOH HOH . M 7 HOH B 43 943 128 HOH HOH . M 7 HOH B 44 944 91 HOH HOH . M 7 HOH B 45 945 134 HOH HOH . M 7 HOH B 46 946 111 HOH HOH . M 7 HOH B 47 947 5 HOH HOH . M 7 HOH B 48 948 8 HOH HOH . M 7 HOH B 49 949 152 HOH HOH . M 7 HOH B 50 950 139 HOH HOH . M 7 HOH B 51 951 98 HOH HOH . M 7 HOH B 52 952 138 HOH HOH . M 7 HOH B 53 953 136 HOH HOH . M 7 HOH B 54 954 7 HOH HOH . M 7 HOH B 55 955 163 HOH HOH . M 7 HOH B 56 956 166 HOH HOH . M 7 HOH B 57 957 148 HOH HOH . M 7 HOH B 58 958 90 HOH HOH . M 7 HOH B 59 959 154 HOH HOH . M 7 HOH B 60 960 40 HOH HOH . M 7 HOH B 61 961 133 HOH HOH . M 7 HOH B 62 962 158 HOH HOH . M 7 HOH B 63 963 109 HOH HOH . M 7 HOH B 64 964 137 HOH HOH . M 7 HOH B 65 965 196 HOH HOH . M 7 HOH B 66 966 171 HOH HOH . M 7 HOH B 67 967 167 HOH HOH . M 7 HOH B 68 968 162 HOH HOH . M 7 HOH B 69 969 156 HOH HOH . M 7 HOH B 70 970 172 HOH HOH . M 7 HOH B 71 971 131 HOH HOH . M 7 HOH B 72 972 87 HOH HOH . M 7 HOH B 73 973 151 HOH HOH . M 7 HOH B 74 974 198 HOH HOH . M 7 HOH B 75 975 200 HOH HOH . M 7 HOH B 76 976 194 HOH HOH . M 7 HOH B 77 977 191 HOH HOH . M 7 HOH B 78 978 121 HOH HOH . M 7 HOH B 79 979 93 HOH HOH . M 7 HOH B 80 980 149 HOH HOH . M 7 HOH B 81 981 106 HOH HOH . M 7 HOH B 82 982 96 HOH HOH . M 7 HOH B 83 983 60 HOH HOH . M 7 HOH B 84 984 157 HOH HOH . M 7 HOH B 85 985 97 HOH HOH . M 7 HOH B 86 986 150 HOH HOH . M 7 HOH B 87 987 189 HOH HOH . M 7 HOH B 88 988 105 HOH HOH . M 7 HOH B 89 989 119 HOH HOH . M 7 HOH B 90 990 112 HOH HOH . M 7 HOH B 91 991 153 HOH HOH . M 7 HOH B 92 992 100 HOH HOH . M 7 HOH B 93 993 114 HOH HOH . M 7 HOH B 94 994 197 HOH HOH . M 7 HOH B 95 995 169 HOH HOH . M 7 HOH B 96 996 120 HOH HOH . M 7 HOH B 97 997 185 HOH HOH . M 7 HOH B 98 998 92 HOH HOH . M 7 HOH B 99 999 3 HOH HOH . M 7 HOH B 100 1000 168 HOH HOH . M 7 HOH B 101 1001 57 HOH HOH . M 7 HOH B 102 1002 38 HOH HOH . M 7 HOH B 103 1003 113 HOH HOH . M 7 HOH B 104 1004 103 HOH HOH . M 7 HOH B 105 1005 160 HOH HOH . M 7 HOH B 106 1006 101 HOH HOH . M 7 HOH B 107 1007 165 HOH HOH . M 7 HOH B 108 1008 124 HOH HOH . M 7 HOH B 109 1009 140 HOH HOH . M 7 HOH B 110 1010 116 HOH HOH . M 7 HOH B 111 1011 192 HOH HOH . M 7 HOH B 112 1012 122 HOH HOH . M 7 HOH B 113 1013 102 HOH HOH . M 7 HOH B 114 1014 199 HOH HOH . M 7 HOH B 115 1015 186 HOH HOH . M 7 HOH B 116 1016 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H4B . . . D 3 9.985 2.713 34.217 1 64.71 ? N1 H4B 802 A 1 HETATM 2 C C2 H4B . . . D 3 10.257 2.152 33.004 1 57.38 ? C2 H4B 802 A 1 HETATM 3 N N2 H4B . . . D 3 11.55 2.003 32.615 1 47.08 ? N2 H4B 802 A 1 HETATM 4 N N3 H4B . . . D 3 9.239 1.739 32.207 1 49.88 ? N3 H4B 802 A 1 HETATM 5 C C4 H4B . . . D 3 7.947 1.882 32.604 1 59.87 ? C4 H4B 802 A 1 HETATM 6 O O4 H4B . . . D 3 7.022 1.503 31.849 1 71.17 ? O4 H4B 802 A 1 HETATM 7 C C4A H4B . . . D 3 7.656 2.469 33.841 1 52.24 ? C4A H4B 802 A 1 HETATM 8 C C8A H4B . . . D 3 8.71 2.873 34.648 1 49.26 ? C8A H4B 802 A 1 HETATM 9 N N5 H4B . . . D 3 6.383 2.629 34.277 1 45.54 ? N5 H4B 802 A 1 HETATM 10 N N8 H4B . . . D 3 8.482 3.445 35.845 1 43.93 ? N8 H4B 802 A 1 HETATM 11 C C6 H4B . . . D 3 6.128 3.659 35.274 1 48.67 ? C6 H4B 802 A 1 HETATM 12 C C7 H4B . . . D 3 7.15 3.61 36.403 1 41.01 ? C7 H4B 802 A 1 HETATM 13 C C9 H4B . . . D 3 4.704 3.581 35.806 1 61.34 ? C9 H4B 802 A 1 HETATM 14 O O9 H4B . . . D 3 4.307 2.208 35.825 1 68.3 ? O9 H4B 802 A 1 HETATM 15 C C10 H4B . . . D 3 4.592 4.163 37.223 1 73.29 ? C10 H4B 802 A 1 HETATM 16 C C11 H4B . . . D 3 3.173 4.047 37.757 1 75.21 ? C11 H4B 802 A 1 HETATM 17 O O10 H4B . . . D 3 4.95 5.549 37.281 1 77.6 ? O10 H4B 802 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 17 #