data_6PN6
#
_model_server_result.job_id            A5387Oaw6PkEbEpv56rJMA 
_model_server_result.datetime_utc      '2024-11-08 15:05:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pn6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":802}' 
#
_entry.id    6PN6 
#
_exptl.entry_id    6PN6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              241.247 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5,6,7,8-TETRAHYDROBIOPTERIN 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PN6 
_cell.length_a            51.553 
_cell.length_b            111.173 
_cell.length_c            164.337 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PN6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 K ZN ZN . B ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? 
metalc ? metalc2 A SG CYS 35 A CYS 331 1_555 K ZN ZN . B ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc3 A SG CYS 119 A CYS 415 1_555 C FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc4 B SG CYS 30 B CYS 326 1_555 K ZN ZN . B ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc5 B SG CYS 35 B CYS 331 1_555 K ZN ZN . B ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc6 B SG CYS 119 B CYS 415 1_555 G FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? 
#
_chem_comp.formula           'C9 H15 N5 O3' 
_chem_comp.formula_weight    241.247 
_chem_comp.id                H4B 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5,6,7,8-TETRAHYDROBIOPTERIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 H4B doub 135 n y 
N1 C8A H4B sing 136 n y 
C2 N2 H4B sing 137 n n 
C2 N3 H4B sing 138 n y 
N2 HN21 H4B sing 139 n n 
N2 HN22 H4B sing 140 n n 
N3 C4 H4B sing 141 n y 
N3 HN3 H4B sing 142 n n 
C4 O4 H4B doub 143 n n 
C4 C4A H4B sing 144 n y 
C4A C8A H4B doub 145 n y 
C4A N5 H4B sing 146 n n 
C8A N8 H4B sing 147 n n 
N5 C6 H4B sing 148 n n 
N5 HN5 H4B sing 149 n n 
N8 C7 H4B sing 150 n n 
N8 HN8 H4B sing 151 n n 
C6 C7 H4B sing 152 n n 
C6 C9 H4B sing 153 n n 
C6 H6 H4B sing 154 n n 
C7 H71 H4B sing 155 n n 
C7 H72 H4B sing 156 n n 
C9 O9 H4B sing 157 n n 
C9 C10 H4B sing 158 n n 
C9 H9 H4B sing 159 n n 
O9 HO9 H4B sing 160 n n 
C10 C11 H4B sing 161 n n 
C10 O10 H4B sing 162 n n 
C10 H10 H4B sing 163 n n 
C11 H111 H4B sing 164 n n 
C11 H112 H4B sing 165 n n 
C11 H113 H4B sing 166 n n 
O10 HO0 H4B sing 167 n n 
#
_atom_sites.entry_id                     6PN6 
_atom_sites.fract_transf_matrix[1][1]    0.019398 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008995 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006085 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 801 750 HEM HEM . 
D 3 H4B A 1 802 760 H4B BH4 . 
E 4 OUS A 1 803 800 OUS 5M5 . 
F 5 ACT A 1 804 860 ACT ACT . 
G 2 HEM B 1 801 750 HEM HEM . 
H 3 H4B B 1 802 760 H4B BH4 . 
I 4 OUS B 1 803 800 OUS 5M5 . 
J 5 ACT B 1 804 860 ACT ACT . 
K 6 ZN B 1 805 900 ZN ZN . 
L 7 HOH A 1 901 62 HOH HOH . 
L 7 HOH A 2 902 68 HOH HOH . 
L 7 HOH A 3 903 69 HOH HOH . 
L 7 HOH A 4 904 76 HOH HOH . 
L 7 HOH A 5 905 59 HOH HOH . 
L 7 HOH A 6 906 166 HOH HOH . 
L 7 HOH A 7 907 79 HOH HOH . 
L 7 HOH A 8 908 77 HOH HOH . 
L 7 HOH A 9 909 40 HOH HOH . 
L 7 HOH A 10 910 66 HOH HOH . 
L 7 HOH A 11 911 42 HOH HOH . 
L 7 HOH A 12 912 32 HOH HOH . 
L 7 HOH A 13 913 150 HOH HOH . 
L 7 HOH A 14 914 36 HOH HOH . 
L 7 HOH A 15 915 74 HOH HOH . 
L 7 HOH A 16 916 159 HOH HOH . 
L 7 HOH A 17 917 54 HOH HOH . 
L 7 HOH A 18 918 57 HOH HOH . 
L 7 HOH A 19 919 84 HOH HOH . 
L 7 HOH A 20 920 37 HOH HOH . 
L 7 HOH A 21 921 85 HOH HOH . 
L 7 HOH A 22 922 25 HOH HOH . 
L 7 HOH A 23 923 31 HOH HOH . 
L 7 HOH A 24 924 61 HOH HOH . 
L 7 HOH A 25 925 65 HOH HOH . 
L 7 HOH A 26 926 45 HOH HOH . 
L 7 HOH A 27 927 70 HOH HOH . 
L 7 HOH A 28 928 34 HOH HOH . 
L 7 HOH A 29 929 38 HOH HOH . 
L 7 HOH A 30 930 7 HOH HOH . 
L 7 HOH A 31 931 86 HOH HOH . 
L 7 HOH A 32 932 39 HOH HOH . 
L 7 HOH A 33 933 30 HOH HOH . 
L 7 HOH A 34 934 29 HOH HOH . 
L 7 HOH A 35 935 35 HOH HOH . 
L 7 HOH A 36 936 165 HOH HOH . 
L 7 HOH A 37 937 162 HOH HOH . 
L 7 HOH A 38 938 67 HOH HOH . 
L 7 HOH A 39 939 41 HOH HOH . 
L 7 HOH A 40 940 83 HOH HOH . 
L 7 HOH A 41 941 63 HOH HOH . 
L 7 HOH A 42 942 53 HOH HOH . 
L 7 HOH A 43 943 160 HOH HOH . 
L 7 HOH A 44 944 158 HOH HOH . 
L 7 HOH A 45 945 58 HOH HOH . 
L 7 HOH A 46 946 44 HOH HOH . 
L 7 HOH A 47 947 161 HOH HOH . 
L 7 HOH A 48 948 43 HOH HOH . 
L 7 HOH A 49 949 50 HOH HOH . 
L 7 HOH A 50 950 81 HOH HOH . 
L 7 HOH A 51 951 64 HOH HOH . 
L 7 HOH A 52 952 111 HOH HOH . 
L 7 HOH A 53 953 60 HOH HOH . 
L 7 HOH A 54 954 55 HOH HOH . 
L 7 HOH A 55 955 157 HOH HOH . 
L 7 HOH A 56 956 75 HOH HOH . 
L 7 HOH A 57 957 26 HOH HOH . 
L 7 HOH A 58 958 73 HOH HOH . 
L 7 HOH A 59 959 164 HOH HOH . 
L 7 HOH A 60 960 27 HOH HOH . 
L 7 HOH A 61 961 170 HOH HOH . 
L 7 HOH A 62 962 163 HOH HOH . 
L 7 HOH A 63 963 82 HOH HOH . 
L 7 HOH A 64 964 87 HOH HOH . 
L 7 HOH A 65 965 56 HOH HOH . 
L 7 HOH A 66 966 78 HOH HOH . 
L 7 HOH A 67 967 51 HOH HOH . 
L 7 HOH A 68 968 169 HOH HOH . 
L 7 HOH A 69 969 167 HOH HOH . 
L 7 HOH A 70 970 80 HOH HOH . 
L 7 HOH A 71 971 168 HOH HOH . 
M 7 HOH B 1 901 90 HOH HOH . 
M 7 HOH B 2 902 171 HOH HOH . 
M 7 HOH B 3 903 107 HOH HOH . 
M 7 HOH B 4 904 23 HOH HOH . 
M 7 HOH B 5 905 130 HOH HOH . 
M 7 HOH B 6 906 13 HOH HOH . 
M 7 HOH B 7 907 94 HOH HOH . 
M 7 HOH B 8 908 110 HOH HOH . 
M 7 HOH B 9 909 149 HOH HOH . 
M 7 HOH B 10 910 19 HOH HOH . 
M 7 HOH B 11 911 128 HOH HOH . 
M 7 HOH B 12 912 151 HOH HOH . 
M 7 HOH B 13 913 126 HOH HOH . 
M 7 HOH B 14 914 97 HOH HOH . 
M 7 HOH B 15 915 52 HOH HOH . 
M 7 HOH B 16 916 120 HOH HOH . 
M 7 HOH B 17 917 135 HOH HOH . 
M 7 HOH B 18 918 20 HOH HOH . 
M 7 HOH B 19 919 21 HOH HOH . 
M 7 HOH B 20 920 99 HOH HOH . 
M 7 HOH B 21 921 117 HOH HOH . 
M 7 HOH B 22 922 177 HOH HOH . 
M 7 HOH B 23 923 138 HOH HOH . 
M 7 HOH B 24 924 93 HOH HOH . 
M 7 HOH B 25 925 140 HOH HOH . 
M 7 HOH B 26 926 95 HOH HOH . 
M 7 HOH B 27 927 103 HOH HOH . 
M 7 HOH B 28 928 183 HOH HOH . 
M 7 HOH B 29 929 113 HOH HOH . 
M 7 HOH B 30 930 6 HOH HOH . 
M 7 HOH B 31 931 1 HOH HOH . 
M 7 HOH B 32 932 129 HOH HOH . 
M 7 HOH B 33 933 88 HOH HOH . 
M 7 HOH B 34 934 98 HOH HOH . 
M 7 HOH B 35 935 112 HOH HOH . 
M 7 HOH B 36 936 123 HOH HOH . 
M 7 HOH B 37 937 121 HOH HOH . 
M 7 HOH B 38 938 119 HOH HOH . 
M 7 HOH B 39 939 46 HOH HOH . 
M 7 HOH B 40 940 4 HOH HOH . 
M 7 HOH B 41 941 152 HOH HOH . 
M 7 HOH B 42 942 18 HOH HOH . 
M 7 HOH B 43 943 124 HOH HOH . 
M 7 HOH B 44 944 49 HOH HOH . 
M 7 HOH B 45 945 180 HOH HOH . 
M 7 HOH B 46 946 47 HOH HOH . 
M 7 HOH B 47 947 179 HOH HOH . 
M 7 HOH B 48 948 181 HOH HOH . 
M 7 HOH B 49 949 15 HOH HOH . 
M 7 HOH B 50 950 14 HOH HOH . 
M 7 HOH B 51 951 142 HOH HOH . 
M 7 HOH B 52 952 17 HOH HOH . 
M 7 HOH B 53 953 125 HOH HOH . 
M 7 HOH B 54 954 116 HOH HOH . 
M 7 HOH B 55 955 89 HOH HOH . 
M 7 HOH B 56 956 145 HOH HOH . 
M 7 HOH B 57 957 2 HOH HOH . 
M 7 HOH B 58 958 136 HOH HOH . 
M 7 HOH B 59 959 108 HOH HOH . 
M 7 HOH B 60 960 3 HOH HOH . 
M 7 HOH B 61 961 182 HOH HOH . 
M 7 HOH B 62 962 122 HOH HOH . 
M 7 HOH B 63 963 114 HOH HOH . 
M 7 HOH B 64 964 12 HOH HOH . 
M 7 HOH B 65 965 48 HOH HOH . 
M 7 HOH B 66 966 9 HOH HOH . 
M 7 HOH B 67 967 127 HOH HOH . 
M 7 HOH B 68 968 71 HOH HOH . 
M 7 HOH B 69 969 137 HOH HOH . 
M 7 HOH B 70 970 24 HOH HOH . 
M 7 HOH B 71 971 5 HOH HOH . 
M 7 HOH B 72 972 96 HOH HOH . 
M 7 HOH B 73 973 141 HOH HOH . 
M 7 HOH B 74 974 156 HOH HOH . 
M 7 HOH B 75 975 109 HOH HOH . 
M 7 HOH B 76 976 16 HOH HOH . 
M 7 HOH B 77 977 147 HOH HOH . 
M 7 HOH B 78 978 10 HOH HOH . 
M 7 HOH B 79 979 155 HOH HOH . 
M 7 HOH B 80 980 131 HOH HOH . 
M 7 HOH B 81 981 101 HOH HOH . 
M 7 HOH B 82 982 8 HOH HOH . 
M 7 HOH B 83 983 134 HOH HOH . 
M 7 HOH B 84 984 104 HOH HOH . 
M 7 HOH B 85 985 174 HOH HOH . 
M 7 HOH B 86 986 143 HOH HOH . 
M 7 HOH B 87 987 91 HOH HOH . 
M 7 HOH B 88 988 153 HOH HOH . 
M 7 HOH B 89 989 184 HOH HOH . 
M 7 HOH B 90 990 187 HOH HOH . 
M 7 HOH B 91 991 185 HOH HOH . 
M 7 HOH B 92 992 139 HOH HOH . 
M 7 HOH B 93 993 132 HOH HOH . 
M 7 HOH B 94 994 100 HOH HOH . 
M 7 HOH B 95 995 72 HOH HOH . 
M 7 HOH B 96 996 154 HOH HOH . 
M 7 HOH B 97 997 188 HOH HOH . 
M 7 HOH B 98 998 144 HOH HOH . 
M 7 HOH B 99 999 102 HOH HOH . 
M 7 HOH B 100 1000 33 HOH HOH . 
M 7 HOH B 101 1001 11 HOH HOH . 
M 7 HOH B 102 1002 106 HOH HOH . 
M 7 HOH B 103 1003 22 HOH HOH . 
M 7 HOH B 104 1004 146 HOH HOH . 
M 7 HOH B 105 1005 92 HOH HOH . 
M 7 HOH B 106 1006 115 HOH HOH . 
M 7 HOH B 107 1007 172 HOH HOH . 
M 7 HOH B 108 1008 186 HOH HOH . 
M 7 HOH B 109 1009 175 HOH HOH . 
M 7 HOH B 110 1010 28 HOH HOH . 
M 7 HOH B 111 1011 173 HOH HOH . 
M 7 HOH B 112 1012 118 HOH HOH . 
M 7 HOH B 113 1013 105 HOH HOH . 
M 7 HOH B 114 1014 133 HOH HOH . 
M 7 HOH B 115 1015 176 HOH HOH . 
M 7 HOH B 116 1016 148 HOH HOH . 
M 7 HOH B 117 1017 178 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 H4B . . . D 3 9.866 2.362 34.155 1 102.46 ? N1 H4B 802 A 1 
HETATM 2 C C2 H4B . . . D 3 10.069 1.861 32.923 1 100.71 ? C2 H4B 802 A 1 
HETATM 3 N N2 H4B . . . D 3 11.343 1.651 32.518 1 98.12 ? N2 H4B 802 A 1 
HETATM 4 N N3 H4B . . . D 3 9.016 1.577 32.12 1 101.48 ? N3 H4B 802 A 1 
HETATM 5 C C4 H4B . . . D 3 7.745 1.791 32.536 1 100.7 ? C4 H4B 802 A 1 
HETATM 6 O O4 H4B . . . D 3 6.78 1.531 31.781 1 104.12 ? O4 H4B 802 A 1 
HETATM 7 C C4A H4B . . . D 3 7.525 2.314 33.798 1 93.75 ? C4A H4B 802 A 1 
HETATM 8 C C8A H4B . . . D 3 8.618 2.591 34.606 1 91.08 ? C8A H4B 802 A 1 
HETATM 9 N N5 H4B . . . D 3 6.281 2.557 34.265 1 86.67 ? N5 H4B 802 A 1 
HETATM 10 N N8 H4B . . . D 3 8.464 3.098 35.85 1 71.77 ? N8 H4B 802 A 1 
HETATM 11 C C6 H4B . . . D 3 6.2 3.616 35.263 1 82.81 ? C6 H4B 802 A 1 
HETATM 12 C C7 H4B . . . D 3 7.146 3.318 36.412 1 68.49 ? C7 H4B 802 A 1 
HETATM 13 C C9 H4B . . . D 3 4.795 3.833 35.802 1 88.26 ? C9 H4B 802 A 1 
HETATM 14 O O9 H4B . . . D 3 4.206 2.557 36.056 1 91.07 ? O9 H4B 802 A 1 
HETATM 15 C C10 H4B . . . D 3 4.841 4.667 37.087 1 93.86 ? C10 H4B 802 A 1 
HETATM 16 C C11 H4B . . . D 3 3.572 4.515 37.913 1 94.6 ? C11 H4B 802 A 1 
HETATM 17 O O10 H4B . . . D 3 5.04 6.053 36.779 1 98.59 ? O10 H4B 802 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           17 
#