data_6PND # _model_server_result.job_id BE4ixD8Ovf3LLOC5vxyVBQ _model_server_result.datetime_utc '2024-11-08 19:37:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pnd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":802}' # _entry.id 6PND # _exptl.entry_id 6PND _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7,8-TETRAHYDROBIOPTERIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PND _cell.length_a 52.234 _cell.length_b 122.302 _cell.length_c 165.291 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PND _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 331 1_555 F ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc2 A SG CYS 35 A CYS 336 1_555 F ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc3 A SG CYS 119 A CYS 420 1_555 C FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc4 F ZN ZN . A ZN 804 1_555 B SG CYS 30 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc5 F ZN ZN . A ZN 804 1_555 B SG CYS 35 B CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc6 B SG CYS 119 B CYS 420 1_555 G FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? # _chem_comp.formula 'C9 H15 N5 O3' _chem_comp.formula_weight 241.247 _chem_comp.id H4B _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7,8-TETRAHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 H4B doub 129 n y N1 C8A H4B sing 130 n y C2 N2 H4B sing 131 n n C2 N3 H4B sing 132 n y N2 HN21 H4B sing 133 n n N2 HN22 H4B sing 134 n n N3 C4 H4B sing 135 n y N3 HN3 H4B sing 136 n n C4 O4 H4B doub 137 n n C4 C4A H4B sing 138 n y C4A C8A H4B doub 139 n y C4A N5 H4B sing 140 n n C8A N8 H4B sing 141 n n N5 C6 H4B sing 142 n n N5 HN5 H4B sing 143 n n N8 C7 H4B sing 144 n n N8 HN8 H4B sing 145 n n C6 C7 H4B sing 146 n n C6 C9 H4B sing 147 n n C6 H6 H4B sing 148 n n C7 H71 H4B sing 149 n n C7 H72 H4B sing 150 n n C9 O9 H4B sing 151 n n C9 C10 H4B sing 152 n n C9 H9 H4B sing 153 n n O9 HO9 H4B sing 154 n n C10 C11 H4B sing 155 n n C10 O10 H4B sing 156 n n C10 H10 H4B sing 157 n n C11 H111 H4B sing 158 n n C11 H112 H4B sing 159 n n C11 H113 H4B sing 160 n n O10 HO0 H4B sing 161 n n # _atom_sites.entry_id 6PND _atom_sites.fract_transf_matrix[1][1] 0.019145 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008176 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00605 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 801 750 HEM HEM . D 3 H4B A 1 802 760 H4B BH4 . E 4 OT4 A 1 803 800 OT4 M56 . F 5 ZN A 1 804 900 ZN ZN . G 2 HEM B 1 801 750 HEM HEM . H 3 H4B B 1 802 760 H4B BH4 . I 4 OT4 B 1 803 800 OT4 M56 . J 6 HOH A 1 901 126 HOH HOH . J 6 HOH A 2 902 78 HOH HOH . J 6 HOH A 3 903 125 HOH HOH . J 6 HOH A 4 904 4 HOH HOH . J 6 HOH A 5 905 88 HOH HOH . J 6 HOH A 6 906 93 HOH HOH . J 6 HOH A 7 907 96 HOH HOH . J 6 HOH A 8 908 61 HOH HOH . J 6 HOH A 9 909 57 HOH HOH . J 6 HOH A 10 910 139 HOH HOH . J 6 HOH A 11 911 90 HOH HOH . J 6 HOH A 12 912 111 HOH HOH . J 6 HOH A 13 913 97 HOH HOH . J 6 HOH A 14 914 121 HOH HOH . J 6 HOH A 15 915 92 HOH HOH . J 6 HOH A 16 916 100 HOH HOH . J 6 HOH A 17 917 82 HOH HOH . J 6 HOH A 18 918 56 HOH HOH . J 6 HOH A 19 919 102 HOH HOH . J 6 HOH A 20 920 133 HOH HOH . J 6 HOH A 21 921 119 HOH HOH . J 6 HOH A 22 922 105 HOH HOH . J 6 HOH A 23 923 106 HOH HOH . J 6 HOH A 24 924 3 HOH HOH . J 6 HOH A 25 925 43 HOH HOH . J 6 HOH A 26 926 117 HOH HOH . J 6 HOH A 27 927 58 HOH HOH . J 6 HOH A 28 928 60 HOH HOH . J 6 HOH A 29 929 109 HOH HOH . J 6 HOH A 30 930 2 HOH HOH . J 6 HOH A 31 931 108 HOH HOH . J 6 HOH A 32 932 13 HOH HOH . J 6 HOH A 33 933 62 HOH HOH . J 6 HOH A 34 934 33 HOH HOH . J 6 HOH A 35 935 83 HOH HOH . J 6 HOH A 36 936 27 HOH HOH . J 6 HOH A 37 937 122 HOH HOH . J 6 HOH A 38 938 36 HOH HOH . J 6 HOH A 39 939 22 HOH HOH . J 6 HOH A 40 940 47 HOH HOH . J 6 HOH A 41 941 29 HOH HOH . J 6 HOH A 42 942 55 HOH HOH . J 6 HOH A 43 943 179 HOH HOH . J 6 HOH A 44 944 104 HOH HOH . J 6 HOH A 45 945 110 HOH HOH . J 6 HOH A 46 946 112 HOH HOH . J 6 HOH A 47 947 30 HOH HOH . J 6 HOH A 48 948 89 HOH HOH . J 6 HOH A 49 949 44 HOH HOH . J 6 HOH A 50 950 11 HOH HOH . J 6 HOH A 51 951 140 HOH HOH . J 6 HOH A 52 952 51 HOH HOH . J 6 HOH A 53 953 138 HOH HOH . J 6 HOH A 54 954 103 HOH HOH . J 6 HOH A 55 955 15 HOH HOH . J 6 HOH A 56 956 23 HOH HOH . J 6 HOH A 57 957 24 HOH HOH . J 6 HOH A 58 958 34 HOH HOH . J 6 HOH A 59 959 118 HOH HOH . J 6 HOH A 60 960 87 HOH HOH . J 6 HOH A 61 961 63 HOH HOH . J 6 HOH A 62 962 123 HOH HOH . J 6 HOH A 63 963 53 HOH HOH . J 6 HOH A 64 964 91 HOH HOH . J 6 HOH A 65 965 84 HOH HOH . J 6 HOH A 66 966 1 HOH HOH . J 6 HOH A 67 967 75 HOH HOH . J 6 HOH A 68 968 26 HOH HOH . J 6 HOH A 69 969 114 HOH HOH . J 6 HOH A 70 970 37 HOH HOH . J 6 HOH A 71 971 94 HOH HOH . J 6 HOH A 72 972 132 HOH HOH . J 6 HOH A 73 973 14 HOH HOH . J 6 HOH A 74 974 127 HOH HOH . J 6 HOH A 75 975 128 HOH HOH . J 6 HOH A 76 976 64 HOH HOH . J 6 HOH A 77 977 21 HOH HOH . J 6 HOH A 78 978 99 HOH HOH . J 6 HOH A 79 979 141 HOH HOH . J 6 HOH A 80 980 115 HOH HOH . J 6 HOH A 81 981 107 HOH HOH . J 6 HOH A 82 982 79 HOH HOH . J 6 HOH A 83 983 124 HOH HOH . J 6 HOH A 84 984 129 HOH HOH . J 6 HOH A 85 985 17 HOH HOH . J 6 HOH A 86 986 66 HOH HOH . J 6 HOH A 87 987 28 HOH HOH . J 6 HOH A 88 988 35 HOH HOH . J 6 HOH A 89 989 25 HOH HOH . J 6 HOH A 90 990 85 HOH HOH . J 6 HOH A 91 991 5 HOH HOH . J 6 HOH A 92 992 98 HOH HOH . J 6 HOH A 93 993 38 HOH HOH . J 6 HOH A 94 994 59 HOH HOH . J 6 HOH A 95 995 120 HOH HOH . J 6 HOH A 96 996 143 HOH HOH . J 6 HOH A 97 997 86 HOH HOH . J 6 HOH A 98 998 113 HOH HOH . J 6 HOH A 99 999 80 HOH HOH . J 6 HOH A 100 1000 116 HOH HOH . J 6 HOH A 101 1001 74 HOH HOH . J 6 HOH A 102 1002 31 HOH HOH . J 6 HOH A 103 1003 134 HOH HOH . J 6 HOH A 104 1004 101 HOH HOH . J 6 HOH A 105 1005 142 HOH HOH . J 6 HOH A 106 1006 76 HOH HOH . J 6 HOH A 107 1007 50 HOH HOH . J 6 HOH A 108 1008 81 HOH HOH . J 6 HOH A 109 1009 95 HOH HOH . J 6 HOH A 110 1010 77 HOH HOH . J 6 HOH A 111 1011 176 HOH HOH . K 6 HOH B 1 901 199 HOH HOH . K 6 HOH B 2 902 41 HOH HOH . K 6 HOH B 3 903 193 HOH HOH . K 6 HOH B 4 904 164 HOH HOH . K 6 HOH B 5 905 65 HOH HOH . K 6 HOH B 6 906 182 HOH HOH . K 6 HOH B 7 907 72 HOH HOH . K 6 HOH B 8 908 162 HOH HOH . K 6 HOH B 9 909 189 HOH HOH . K 6 HOH B 10 910 160 HOH HOH . K 6 HOH B 11 911 163 HOH HOH . K 6 HOH B 12 912 192 HOH HOH . K 6 HOH B 13 913 178 HOH HOH . K 6 HOH B 14 914 67 HOH HOH . K 6 HOH B 15 915 131 HOH HOH . K 6 HOH B 16 916 7 HOH HOH . K 6 HOH B 17 917 135 HOH HOH . K 6 HOH B 18 918 68 HOH HOH . K 6 HOH B 19 919 45 HOH HOH . K 6 HOH B 20 920 167 HOH HOH . K 6 HOH B 21 921 187 HOH HOH . K 6 HOH B 22 922 197 HOH HOH . K 6 HOH B 23 923 185 HOH HOH . K 6 HOH B 24 924 159 HOH HOH . K 6 HOH B 25 925 130 HOH HOH . K 6 HOH B 26 926 181 HOH HOH . K 6 HOH B 27 927 149 HOH HOH . K 6 HOH B 28 928 157 HOH HOH . K 6 HOH B 29 929 150 HOH HOH . K 6 HOH B 30 930 48 HOH HOH . K 6 HOH B 31 931 10 HOH HOH . K 6 HOH B 32 932 161 HOH HOH . K 6 HOH B 33 933 9 HOH HOH . K 6 HOH B 34 934 8 HOH HOH . K 6 HOH B 35 935 191 HOH HOH . K 6 HOH B 36 936 188 HOH HOH . K 6 HOH B 37 937 165 HOH HOH . K 6 HOH B 38 938 144 HOH HOH . K 6 HOH B 39 939 190 HOH HOH . K 6 HOH B 40 940 71 HOH HOH . K 6 HOH B 41 941 171 HOH HOH . K 6 HOH B 42 942 166 HOH HOH . K 6 HOH B 43 943 148 HOH HOH . K 6 HOH B 44 944 19 HOH HOH . K 6 HOH B 45 945 201 HOH HOH . K 6 HOH B 46 946 70 HOH HOH . K 6 HOH B 47 947 151 HOH HOH . K 6 HOH B 48 948 32 HOH HOH . K 6 HOH B 49 949 137 HOH HOH . K 6 HOH B 50 950 174 HOH HOH . K 6 HOH B 51 951 183 HOH HOH . K 6 HOH B 52 952 54 HOH HOH . K 6 HOH B 53 953 194 HOH HOH . K 6 HOH B 54 954 12 HOH HOH . K 6 HOH B 55 955 170 HOH HOH . K 6 HOH B 56 956 52 HOH HOH . K 6 HOH B 57 957 49 HOH HOH . K 6 HOH B 58 958 20 HOH HOH . K 6 HOH B 59 959 18 HOH HOH . K 6 HOH B 60 960 173 HOH HOH . K 6 HOH B 61 961 42 HOH HOH . K 6 HOH B 62 962 69 HOH HOH . K 6 HOH B 63 963 16 HOH HOH . K 6 HOH B 64 964 198 HOH HOH . K 6 HOH B 65 965 39 HOH HOH . K 6 HOH B 66 966 177 HOH HOH . K 6 HOH B 67 967 73 HOH HOH . K 6 HOH B 68 968 156 HOH HOH . K 6 HOH B 69 969 172 HOH HOH . K 6 HOH B 70 970 195 HOH HOH . K 6 HOH B 71 971 158 HOH HOH . K 6 HOH B 72 972 145 HOH HOH . K 6 HOH B 73 973 155 HOH HOH . K 6 HOH B 74 974 6 HOH HOH . K 6 HOH B 75 975 180 HOH HOH . K 6 HOH B 76 976 169 HOH HOH . K 6 HOH B 77 977 196 HOH HOH . K 6 HOH B 78 978 147 HOH HOH . K 6 HOH B 79 979 46 HOH HOH . K 6 HOH B 80 980 184 HOH HOH . K 6 HOH B 81 981 175 HOH HOH . K 6 HOH B 82 982 186 HOH HOH . K 6 HOH B 83 983 202 HOH HOH . K 6 HOH B 84 984 152 HOH HOH . K 6 HOH B 85 985 168 HOH HOH . K 6 HOH B 86 986 153 HOH HOH . K 6 HOH B 87 987 136 HOH HOH . K 6 HOH B 88 988 200 HOH HOH . K 6 HOH B 89 989 154 HOH HOH . K 6 HOH B 90 990 146 HOH HOH . K 6 HOH B 91 991 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H4B . . . H 3 114.568 246.332 336.133 1 89.67 ? N1 H4B 802 B 1 HETATM 2 C C2 H4B . . . H 3 114.783 245.693 334.958 1 88.55 ? C2 H4B 802 B 1 HETATM 3 N N2 H4B . . . H 3 116.055 245.528 334.509 1 81.72 ? N2 H4B 802 B 1 HETATM 4 N N3 H4B . . . H 3 113.731 245.224 334.242 1 85.79 ? N3 H4B 802 B 1 HETATM 5 C C4 H4B . . . H 3 112.462 245.385 334.685 1 84.21 ? C4 H4B 802 B 1 HETATM 6 O O4 H4B . . . H 3 111.501 244.954 334.014 1 88.54 ? O4 H4B 802 B 1 HETATM 7 C C4A H4B . . . H 3 112.23 246.04 335.883 1 77.9 ? C4A H4B 802 B 1 HETATM 8 C C8A H4B . . . H 3 113.312 246.514 336.607 1 75.99 ? C8A H4B 802 B 1 HETATM 9 N N5 H4B . . . H 3 110.979 246.229 336.353 1 62.3 ? N5 H4B 802 B 1 HETATM 10 N N8 H4B . . . H 3 113.128 247.165 337.778 1 62.08 ? N8 H4B 802 B 1 HETATM 11 C C6 H4B . . . H 3 110.821 247.394 337.193 1 69.28 ? C6 H4B 802 B 1 HETATM 12 C C7 H4B . . . H 3 111.808 247.329 338.36 1 63.98 ? C7 H4B 802 B 1 HETATM 13 C C9 H4B . . . H 3 109.384 247.509 337.675 1 78.78 ? C9 H4B 802 B 1 HETATM 14 O O9 H4B . . . H 3 108.834 246.189 337.793 1 86.46 ? O9 H4B 802 B 1 HETATM 15 C C10 H4B . . . H 3 109.334 248.264 339.006 1 76.55 ? C10 H4B 802 B 1 HETATM 16 C C11 H4B . . . H 3 107.918 248.364 339.561 1 81.09 ? C11 H4B 802 B 1 HETATM 17 O O10 H4B . . . H 3 109.859 249.59 338.835 1 70.03 ? O10 H4B 802 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 17 #