data_6PND # _model_server_result.job_id NCKpgVWjXY7o9kFpBpt3bQ _model_server_result.datetime_utc '2024-11-24 13:30:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pnd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":804}' # _entry.id 6PND # _exptl.entry_id 6PND _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PND _cell.length_a 52.234 _cell.length_b 122.302 _cell.length_c 165.291 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PND _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 331 1_555 F ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc2 A SG CYS 35 A CYS 336 1_555 F ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc3 A SG CYS 119 A CYS 420 1_555 C FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc4 F ZN ZN . A ZN 804 1_555 B SG CYS 30 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc5 F ZN ZN . A ZN 804 1_555 B SG CYS 35 B CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc6 B SG CYS 119 B CYS 420 1_555 G FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6PND _atom_sites.fract_transf_matrix[1][1] 0.019145 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008176 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00605 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 801 750 HEM HEM . D 3 H4B A 1 802 760 H4B BH4 . E 4 OT4 A 1 803 800 OT4 M56 . F 5 ZN A 1 804 900 ZN ZN . G 2 HEM B 1 801 750 HEM HEM . H 3 H4B B 1 802 760 H4B BH4 . I 4 OT4 B 1 803 800 OT4 M56 . J 6 HOH A 1 901 126 HOH HOH . J 6 HOH A 2 902 78 HOH HOH . J 6 HOH A 3 903 125 HOH HOH . J 6 HOH A 4 904 4 HOH HOH . J 6 HOH A 5 905 88 HOH HOH . J 6 HOH A 6 906 93 HOH HOH . J 6 HOH A 7 907 96 HOH HOH . J 6 HOH A 8 908 61 HOH HOH . J 6 HOH A 9 909 57 HOH HOH . J 6 HOH A 10 910 139 HOH HOH . J 6 HOH A 11 911 90 HOH HOH . J 6 HOH A 12 912 111 HOH HOH . J 6 HOH A 13 913 97 HOH HOH . J 6 HOH A 14 914 121 HOH HOH . J 6 HOH A 15 915 92 HOH HOH . J 6 HOH A 16 916 100 HOH HOH . J 6 HOH A 17 917 82 HOH HOH . J 6 HOH A 18 918 56 HOH HOH . J 6 HOH A 19 919 102 HOH HOH . J 6 HOH A 20 920 133 HOH HOH . J 6 HOH A 21 921 119 HOH HOH . J 6 HOH A 22 922 105 HOH HOH . J 6 HOH A 23 923 106 HOH HOH . J 6 HOH A 24 924 3 HOH HOH . J 6 HOH A 25 925 43 HOH HOH . J 6 HOH A 26 926 117 HOH HOH . J 6 HOH A 27 927 58 HOH HOH . J 6 HOH A 28 928 60 HOH HOH . J 6 HOH A 29 929 109 HOH HOH . J 6 HOH A 30 930 2 HOH HOH . J 6 HOH A 31 931 108 HOH HOH . J 6 HOH A 32 932 13 HOH HOH . J 6 HOH A 33 933 62 HOH HOH . J 6 HOH A 34 934 33 HOH HOH . J 6 HOH A 35 935 83 HOH HOH . J 6 HOH A 36 936 27 HOH HOH . J 6 HOH A 37 937 122 HOH HOH . J 6 HOH A 38 938 36 HOH HOH . J 6 HOH A 39 939 22 HOH HOH . J 6 HOH A 40 940 47 HOH HOH . J 6 HOH A 41 941 29 HOH HOH . J 6 HOH A 42 942 55 HOH HOH . J 6 HOH A 43 943 179 HOH HOH . J 6 HOH A 44 944 104 HOH HOH . J 6 HOH A 45 945 110 HOH HOH . J 6 HOH A 46 946 112 HOH HOH . J 6 HOH A 47 947 30 HOH HOH . J 6 HOH A 48 948 89 HOH HOH . J 6 HOH A 49 949 44 HOH HOH . J 6 HOH A 50 950 11 HOH HOH . J 6 HOH A 51 951 140 HOH HOH . J 6 HOH A 52 952 51 HOH HOH . J 6 HOH A 53 953 138 HOH HOH . J 6 HOH A 54 954 103 HOH HOH . J 6 HOH A 55 955 15 HOH HOH . J 6 HOH A 56 956 23 HOH HOH . J 6 HOH A 57 957 24 HOH HOH . J 6 HOH A 58 958 34 HOH HOH . J 6 HOH A 59 959 118 HOH HOH . J 6 HOH A 60 960 87 HOH HOH . J 6 HOH A 61 961 63 HOH HOH . J 6 HOH A 62 962 123 HOH HOH . J 6 HOH A 63 963 53 HOH HOH . J 6 HOH A 64 964 91 HOH HOH . J 6 HOH A 65 965 84 HOH HOH . J 6 HOH A 66 966 1 HOH HOH . J 6 HOH A 67 967 75 HOH HOH . J 6 HOH A 68 968 26 HOH HOH . J 6 HOH A 69 969 114 HOH HOH . J 6 HOH A 70 970 37 HOH HOH . J 6 HOH A 71 971 94 HOH HOH . J 6 HOH A 72 972 132 HOH HOH . J 6 HOH A 73 973 14 HOH HOH . J 6 HOH A 74 974 127 HOH HOH . J 6 HOH A 75 975 128 HOH HOH . J 6 HOH A 76 976 64 HOH HOH . J 6 HOH A 77 977 21 HOH HOH . J 6 HOH A 78 978 99 HOH HOH . J 6 HOH A 79 979 141 HOH HOH . J 6 HOH A 80 980 115 HOH HOH . J 6 HOH A 81 981 107 HOH HOH . J 6 HOH A 82 982 79 HOH HOH . J 6 HOH A 83 983 124 HOH HOH . J 6 HOH A 84 984 129 HOH HOH . J 6 HOH A 85 985 17 HOH HOH . J 6 HOH A 86 986 66 HOH HOH . J 6 HOH A 87 987 28 HOH HOH . J 6 HOH A 88 988 35 HOH HOH . J 6 HOH A 89 989 25 HOH HOH . J 6 HOH A 90 990 85 HOH HOH . J 6 HOH A 91 991 5 HOH HOH . J 6 HOH A 92 992 98 HOH HOH . J 6 HOH A 93 993 38 HOH HOH . J 6 HOH A 94 994 59 HOH HOH . J 6 HOH A 95 995 120 HOH HOH . J 6 HOH A 96 996 143 HOH HOH . J 6 HOH A 97 997 86 HOH HOH . J 6 HOH A 98 998 113 HOH HOH . J 6 HOH A 99 999 80 HOH HOH . J 6 HOH A 100 1000 116 HOH HOH . J 6 HOH A 101 1001 74 HOH HOH . J 6 HOH A 102 1002 31 HOH HOH . J 6 HOH A 103 1003 134 HOH HOH . J 6 HOH A 104 1004 101 HOH HOH . J 6 HOH A 105 1005 142 HOH HOH . J 6 HOH A 106 1006 76 HOH HOH . J 6 HOH A 107 1007 50 HOH HOH . J 6 HOH A 108 1008 81 HOH HOH . J 6 HOH A 109 1009 95 HOH HOH . J 6 HOH A 110 1010 77 HOH HOH . J 6 HOH A 111 1011 176 HOH HOH . K 6 HOH B 1 901 199 HOH HOH . K 6 HOH B 2 902 41 HOH HOH . K 6 HOH B 3 903 193 HOH HOH . K 6 HOH B 4 904 164 HOH HOH . K 6 HOH B 5 905 65 HOH HOH . K 6 HOH B 6 906 182 HOH HOH . K 6 HOH B 7 907 72 HOH HOH . K 6 HOH B 8 908 162 HOH HOH . K 6 HOH B 9 909 189 HOH HOH . K 6 HOH B 10 910 160 HOH HOH . K 6 HOH B 11 911 163 HOH HOH . K 6 HOH B 12 912 192 HOH HOH . K 6 HOH B 13 913 178 HOH HOH . K 6 HOH B 14 914 67 HOH HOH . K 6 HOH B 15 915 131 HOH HOH . K 6 HOH B 16 916 7 HOH HOH . K 6 HOH B 17 917 135 HOH HOH . K 6 HOH B 18 918 68 HOH HOH . K 6 HOH B 19 919 45 HOH HOH . K 6 HOH B 20 920 167 HOH HOH . K 6 HOH B 21 921 187 HOH HOH . K 6 HOH B 22 922 197 HOH HOH . K 6 HOH B 23 923 185 HOH HOH . K 6 HOH B 24 924 159 HOH HOH . K 6 HOH B 25 925 130 HOH HOH . K 6 HOH B 26 926 181 HOH HOH . K 6 HOH B 27 927 149 HOH HOH . K 6 HOH B 28 928 157 HOH HOH . K 6 HOH B 29 929 150 HOH HOH . K 6 HOH B 30 930 48 HOH HOH . K 6 HOH B 31 931 10 HOH HOH . K 6 HOH B 32 932 161 HOH HOH . K 6 HOH B 33 933 9 HOH HOH . K 6 HOH B 34 934 8 HOH HOH . K 6 HOH B 35 935 191 HOH HOH . K 6 HOH B 36 936 188 HOH HOH . K 6 HOH B 37 937 165 HOH HOH . K 6 HOH B 38 938 144 HOH HOH . K 6 HOH B 39 939 190 HOH HOH . K 6 HOH B 40 940 71 HOH HOH . K 6 HOH B 41 941 171 HOH HOH . K 6 HOH B 42 942 166 HOH HOH . K 6 HOH B 43 943 148 HOH HOH . K 6 HOH B 44 944 19 HOH HOH . K 6 HOH B 45 945 201 HOH HOH . K 6 HOH B 46 946 70 HOH HOH . K 6 HOH B 47 947 151 HOH HOH . K 6 HOH B 48 948 32 HOH HOH . K 6 HOH B 49 949 137 HOH HOH . K 6 HOH B 50 950 174 HOH HOH . K 6 HOH B 51 951 183 HOH HOH . K 6 HOH B 52 952 54 HOH HOH . K 6 HOH B 53 953 194 HOH HOH . K 6 HOH B 54 954 12 HOH HOH . K 6 HOH B 55 955 170 HOH HOH . K 6 HOH B 56 956 52 HOH HOH . K 6 HOH B 57 957 49 HOH HOH . K 6 HOH B 58 958 20 HOH HOH . K 6 HOH B 59 959 18 HOH HOH . K 6 HOH B 60 960 173 HOH HOH . K 6 HOH B 61 961 42 HOH HOH . K 6 HOH B 62 962 69 HOH HOH . K 6 HOH B 63 963 16 HOH HOH . K 6 HOH B 64 964 198 HOH HOH . K 6 HOH B 65 965 39 HOH HOH . K 6 HOH B 66 966 177 HOH HOH . K 6 HOH B 67 967 73 HOH HOH . K 6 HOH B 68 968 156 HOH HOH . K 6 HOH B 69 969 172 HOH HOH . K 6 HOH B 70 970 195 HOH HOH . K 6 HOH B 71 971 158 HOH HOH . K 6 HOH B 72 972 145 HOH HOH . K 6 HOH B 73 973 155 HOH HOH . K 6 HOH B 74 974 6 HOH HOH . K 6 HOH B 75 975 180 HOH HOH . K 6 HOH B 76 976 169 HOH HOH . K 6 HOH B 77 977 196 HOH HOH . K 6 HOH B 78 978 147 HOH HOH . K 6 HOH B 79 979 46 HOH HOH . K 6 HOH B 80 980 184 HOH HOH . K 6 HOH B 81 981 175 HOH HOH . K 6 HOH B 82 982 186 HOH HOH . K 6 HOH B 83 983 202 HOH HOH . K 6 HOH B 84 984 152 HOH HOH . K 6 HOH B 85 985 168 HOH HOH . K 6 HOH B 86 986 153 HOH HOH . K 6 HOH B 87 987 136 HOH HOH . K 6 HOH B 88 988 200 HOH HOH . K 6 HOH B 89 989 154 HOH HOH . K 6 HOH B 90 990 146 HOH HOH . K 6 HOH B 91 991 40 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 113.793 _atom_site.Cartn_y 260.269 _atom_site.Cartn_z 342.945 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 50.34 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 804 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 118 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #