data_6PNM # _model_server_result.job_id iw8s0zwzuohlBNgtTUa6SA _model_server_result.datetime_utc '2025-02-05 12:55:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pnm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1005}' # _entry.id 6PNM # _exptl.entry_id 6PNM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6PNM _cell.length_a 57.25 _cell.length_b 57.25 _cell.length_c 139.85 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PNM _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 93.233333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 31 A CYS 32 1_555 B C1 XX0 . A XX0 1001 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.796 ? covale ? covale2 A SG CYS 31 A CYS 32 1_555 B C1 XX0 . A XX0 1001 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.775 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 6PNM _atom_sites.fract_transf_matrix[1][1] 0.017467 _atom_sites.fract_transf_matrix[1][2] 0.010085 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020169 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007151 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XX0 A 1 1001 1001 XX0 XX0 . C 3 SO4 A 1 1002 1 SO4 SO4 . D 3 SO4 A 1 1003 2 SO4 SO4 . E 3 SO4 A 1 1004 3 SO4 SO4 . F 3 SO4 A 1 1005 4 SO4 SO4 . G 4 TLA A 1 1006 5 TLA TLA . H 5 HOH A 1 1101 51 HOH HOH . H 5 HOH A 2 1102 43 HOH HOH . H 5 HOH A 3 1103 263 HOH HOH . H 5 HOH A 4 1104 60 HOH HOH . H 5 HOH A 5 1105 261 HOH HOH . H 5 HOH A 6 1106 193 HOH HOH . H 5 HOH A 7 1107 102 HOH HOH . H 5 HOH A 8 1108 198 HOH HOH . H 5 HOH A 9 1109 153 HOH HOH . H 5 HOH A 10 1110 259 HOH HOH . H 5 HOH A 11 1111 171 HOH HOH . H 5 HOH A 12 1112 29 HOH HOH . H 5 HOH A 13 1113 53 HOH HOH . H 5 HOH A 14 1114 242 HOH HOH . H 5 HOH A 15 1115 221 HOH HOH . H 5 HOH A 16 1116 260 HOH HOH . H 5 HOH A 17 1117 122 HOH HOH . H 5 HOH A 18 1118 235 HOH HOH . H 5 HOH A 19 1119 20 HOH HOH . H 5 HOH A 20 1120 8 HOH HOH . H 5 HOH A 21 1121 146 HOH HOH . H 5 HOH A 22 1122 220 HOH HOH . H 5 HOH A 23 1123 70 HOH HOH . H 5 HOH A 24 1124 108 HOH HOH . H 5 HOH A 25 1125 240 HOH HOH . H 5 HOH A 26 1126 116 HOH HOH . H 5 HOH A 27 1127 247 HOH HOH . H 5 HOH A 28 1128 59 HOH HOH . H 5 HOH A 29 1129 264 HOH HOH . H 5 HOH A 30 1130 117 HOH HOH . H 5 HOH A 31 1131 165 HOH HOH . H 5 HOH A 32 1132 157 HOH HOH . H 5 HOH A 33 1133 217 HOH HOH . H 5 HOH A 34 1134 57 HOH HOH . H 5 HOH A 35 1135 68 HOH HOH . H 5 HOH A 36 1136 4 HOH HOH . H 5 HOH A 37 1137 136 HOH HOH . H 5 HOH A 38 1138 12 HOH HOH . H 5 HOH A 39 1139 34 HOH HOH . H 5 HOH A 40 1140 2 HOH HOH . H 5 HOH A 41 1141 219 HOH HOH . H 5 HOH A 42 1142 84 HOH HOH . H 5 HOH A 43 1143 145 HOH HOH . H 5 HOH A 44 1144 45 HOH HOH . H 5 HOH A 45 1145 28 HOH HOH . H 5 HOH A 46 1146 76 HOH HOH . H 5 HOH A 47 1147 30 HOH HOH . H 5 HOH A 48 1148 46 HOH HOH . H 5 HOH A 49 1149 31 HOH HOH . H 5 HOH A 50 1150 114 HOH HOH . H 5 HOH A 51 1151 250 HOH HOH . H 5 HOH A 52 1152 266 HOH HOH . H 5 HOH A 53 1153 44 HOH HOH . H 5 HOH A 54 1154 162 HOH HOH . H 5 HOH A 55 1155 73 HOH HOH . H 5 HOH A 56 1156 141 HOH HOH . H 5 HOH A 57 1157 64 HOH HOH . H 5 HOH A 58 1158 19 HOH HOH . H 5 HOH A 59 1159 169 HOH HOH . H 5 HOH A 60 1160 79 HOH HOH . H 5 HOH A 61 1161 62 HOH HOH . H 5 HOH A 62 1162 93 HOH HOH . H 5 HOH A 63 1163 42 HOH HOH . H 5 HOH A 64 1164 190 HOH HOH . H 5 HOH A 65 1165 188 HOH HOH . H 5 HOH A 66 1166 152 HOH HOH . H 5 HOH A 67 1167 131 HOH HOH . H 5 HOH A 68 1168 149 HOH HOH . H 5 HOH A 69 1169 120 HOH HOH . H 5 HOH A 70 1170 39 HOH HOH . H 5 HOH A 71 1171 168 HOH HOH . H 5 HOH A 72 1172 22 HOH HOH . H 5 HOH A 73 1173 49 HOH HOH . H 5 HOH A 74 1174 80 HOH HOH . H 5 HOH A 75 1175 177 HOH HOH . H 5 HOH A 76 1176 21 HOH HOH . H 5 HOH A 77 1177 164 HOH HOH . H 5 HOH A 78 1178 33 HOH HOH . H 5 HOH A 79 1179 81 HOH HOH . H 5 HOH A 80 1180 184 HOH HOH . H 5 HOH A 81 1181 32 HOH HOH . H 5 HOH A 82 1182 37 HOH HOH . H 5 HOH A 83 1183 101 HOH HOH . H 5 HOH A 84 1184 121 HOH HOH . H 5 HOH A 85 1185 26 HOH HOH . H 5 HOH A 86 1186 216 HOH HOH . H 5 HOH A 87 1187 40 HOH HOH . H 5 HOH A 88 1188 9 HOH HOH . H 5 HOH A 89 1189 11 HOH HOH . H 5 HOH A 90 1190 212 HOH HOH . H 5 HOH A 91 1191 209 HOH HOH . H 5 HOH A 92 1192 16 HOH HOH . H 5 HOH A 93 1193 18 HOH HOH . H 5 HOH A 94 1194 106 HOH HOH . H 5 HOH A 95 1195 155 HOH HOH . H 5 HOH A 96 1196 230 HOH HOH . H 5 HOH A 97 1197 71 HOH HOH . H 5 HOH A 98 1198 112 HOH HOH . H 5 HOH A 99 1199 83 HOH HOH . H 5 HOH A 100 1200 140 HOH HOH . H 5 HOH A 101 1201 243 HOH HOH . H 5 HOH A 102 1202 143 HOH HOH . H 5 HOH A 103 1203 104 HOH HOH . H 5 HOH A 104 1204 95 HOH HOH . H 5 HOH A 105 1205 265 HOH HOH . H 5 HOH A 106 1206 1 HOH HOH . H 5 HOH A 107 1207 88 HOH HOH . H 5 HOH A 108 1208 110 HOH HOH . H 5 HOH A 109 1209 96 HOH HOH . H 5 HOH A 110 1210 125 HOH HOH . H 5 HOH A 111 1211 15 HOH HOH . H 5 HOH A 112 1212 129 HOH HOH . H 5 HOH A 113 1213 56 HOH HOH . H 5 HOH A 114 1214 66 HOH HOH . H 5 HOH A 115 1215 27 HOH HOH . H 5 HOH A 116 1216 154 HOH HOH . H 5 HOH A 117 1217 91 HOH HOH . H 5 HOH A 118 1218 72 HOH HOH . H 5 HOH A 119 1219 78 HOH HOH . H 5 HOH A 120 1220 133 HOH HOH . H 5 HOH A 121 1221 119 HOH HOH . H 5 HOH A 122 1222 181 HOH HOH . H 5 HOH A 123 1223 13 HOH HOH . H 5 HOH A 124 1224 69 HOH HOH . H 5 HOH A 125 1225 17 HOH HOH . H 5 HOH A 126 1226 159 HOH HOH . H 5 HOH A 127 1227 75 HOH HOH . H 5 HOH A 128 1228 6 HOH HOH . H 5 HOH A 129 1229 137 HOH HOH . H 5 HOH A 130 1230 7 HOH HOH . H 5 HOH A 131 1231 10 HOH HOH . H 5 HOH A 132 1232 160 HOH HOH . H 5 HOH A 133 1233 63 HOH HOH . H 5 HOH A 134 1234 36 HOH HOH . H 5 HOH A 135 1235 58 HOH HOH . H 5 HOH A 136 1236 214 HOH HOH . H 5 HOH A 137 1237 74 HOH HOH . H 5 HOH A 138 1238 126 HOH HOH . H 5 HOH A 139 1239 24 HOH HOH . H 5 HOH A 140 1240 38 HOH HOH . H 5 HOH A 141 1241 225 HOH HOH . H 5 HOH A 142 1242 3 HOH HOH . H 5 HOH A 143 1243 52 HOH HOH . H 5 HOH A 144 1244 175 HOH HOH . H 5 HOH A 145 1245 239 HOH HOH . H 5 HOH A 146 1246 87 HOH HOH . H 5 HOH A 147 1247 113 HOH HOH . H 5 HOH A 148 1248 161 HOH HOH . H 5 HOH A 149 1249 107 HOH HOH . H 5 HOH A 150 1250 82 HOH HOH . H 5 HOH A 151 1251 128 HOH HOH . H 5 HOH A 152 1252 5 HOH HOH . H 5 HOH A 153 1253 174 HOH HOH . H 5 HOH A 154 1254 48 HOH HOH . H 5 HOH A 155 1255 173 HOH HOH . H 5 HOH A 156 1256 77 HOH HOH . H 5 HOH A 157 1257 25 HOH HOH . H 5 HOH A 158 1258 194 HOH HOH . H 5 HOH A 159 1259 47 HOH HOH . H 5 HOH A 160 1260 89 HOH HOH . H 5 HOH A 161 1261 115 HOH HOH . H 5 HOH A 162 1262 103 HOH HOH . H 5 HOH A 163 1263 99 HOH HOH . H 5 HOH A 164 1264 23 HOH HOH . H 5 HOH A 165 1265 109 HOH HOH . H 5 HOH A 166 1266 14 HOH HOH . H 5 HOH A 167 1267 183 HOH HOH . H 5 HOH A 168 1268 189 HOH HOH . H 5 HOH A 169 1269 249 HOH HOH . H 5 HOH A 170 1270 61 HOH HOH . H 5 HOH A 171 1271 144 HOH HOH . H 5 HOH A 172 1272 172 HOH HOH . H 5 HOH A 173 1273 55 HOH HOH . H 5 HOH A 174 1274 105 HOH HOH . H 5 HOH A 175 1275 85 HOH HOH . H 5 HOH A 176 1276 255 HOH HOH . H 5 HOH A 177 1277 238 HOH HOH . H 5 HOH A 178 1278 226 HOH HOH . H 5 HOH A 179 1279 142 HOH HOH . H 5 HOH A 180 1280 179 HOH HOH . H 5 HOH A 181 1281 203 HOH HOH . H 5 HOH A 182 1282 252 HOH HOH . H 5 HOH A 183 1283 180 HOH HOH . H 5 HOH A 184 1284 65 HOH HOH . H 5 HOH A 185 1285 35 HOH HOH . H 5 HOH A 186 1286 205 HOH HOH . H 5 HOH A 187 1287 130 HOH HOH . H 5 HOH A 188 1288 245 HOH HOH . H 5 HOH A 189 1289 86 HOH HOH . H 5 HOH A 190 1290 211 HOH HOH . H 5 HOH A 191 1291 210 HOH HOH . H 5 HOH A 192 1292 150 HOH HOH . H 5 HOH A 193 1293 258 HOH HOH . H 5 HOH A 194 1294 98 HOH HOH . H 5 HOH A 195 1295 215 HOH HOH . H 5 HOH A 196 1296 191 HOH HOH . H 5 HOH A 197 1297 200 HOH HOH . H 5 HOH A 198 1298 227 HOH HOH . H 5 HOH A 199 1299 262 HOH HOH . H 5 HOH A 200 1300 50 HOH HOH . H 5 HOH A 201 1301 232 HOH HOH . H 5 HOH A 202 1302 257 HOH HOH . H 5 HOH A 203 1303 253 HOH HOH . H 5 HOH A 204 1304 207 HOH HOH . H 5 HOH A 205 1305 246 HOH HOH . H 5 HOH A 206 1306 228 HOH HOH . H 5 HOH A 207 1307 186 HOH HOH . H 5 HOH A 208 1308 90 HOH HOH . H 5 HOH A 209 1309 233 HOH HOH . H 5 HOH A 210 1310 248 HOH HOH . H 5 HOH A 211 1311 111 HOH HOH . H 5 HOH A 212 1312 237 HOH HOH . H 5 HOH A 213 1313 231 HOH HOH . H 5 HOH A 214 1314 222 HOH HOH . H 5 HOH A 215 1315 166 HOH HOH . H 5 HOH A 216 1316 94 HOH HOH . H 5 HOH A 217 1317 202 HOH HOH . H 5 HOH A 218 1318 100 HOH HOH . H 5 HOH A 219 1319 41 HOH HOH . H 5 HOH A 220 1320 148 HOH HOH . H 5 HOH A 221 1321 208 HOH HOH . H 5 HOH A 222 1322 158 HOH HOH . H 5 HOH A 223 1323 123 HOH HOH . H 5 HOH A 224 1324 54 HOH HOH . H 5 HOH A 225 1325 134 HOH HOH . H 5 HOH A 226 1326 151 HOH HOH . H 5 HOH A 227 1327 127 HOH HOH . H 5 HOH A 228 1328 197 HOH HOH . H 5 HOH A 229 1329 182 HOH HOH . H 5 HOH A 230 1330 92 HOH HOH . H 5 HOH A 231 1331 199 HOH HOH . H 5 HOH A 232 1332 67 HOH HOH . H 5 HOH A 233 1333 223 HOH HOH . H 5 HOH A 234 1334 254 HOH HOH . H 5 HOH A 235 1335 206 HOH HOH . H 5 HOH A 236 1336 118 HOH HOH . H 5 HOH A 237 1337 236 HOH HOH . H 5 HOH A 238 1338 241 HOH HOH . H 5 HOH A 239 1339 132 HOH HOH . H 5 HOH A 240 1340 170 HOH HOH . H 5 HOH A 241 1341 147 HOH HOH . H 5 HOH A 242 1342 204 HOH HOH . H 5 HOH A 243 1343 138 HOH HOH . H 5 HOH A 244 1344 234 HOH HOH . H 5 HOH A 245 1345 156 HOH HOH . H 5 HOH A 246 1346 187 HOH HOH . H 5 HOH A 247 1347 97 HOH HOH . H 5 HOH A 248 1348 201 HOH HOH . H 5 HOH A 249 1349 185 HOH HOH . H 5 HOH A 250 1350 195 HOH HOH . H 5 HOH A 251 1351 163 HOH HOH . H 5 HOH A 252 1352 244 HOH HOH . H 5 HOH A 253 1353 229 HOH HOH . H 5 HOH A 254 1354 224 HOH HOH . H 5 HOH A 255 1355 192 HOH HOH . H 5 HOH A 256 1356 167 HOH HOH . H 5 HOH A 257 1357 196 HOH HOH . H 5 HOH A 258 1358 135 HOH HOH . H 5 HOH A 259 1359 176 HOH HOH . H 5 HOH A 260 1360 139 HOH HOH . H 5 HOH A 261 1361 251 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . F 3 22.531 24.358 34.388 0.63 35.89 ? S SO4 1005 A 1 HETATM 2 O O1 SO4 . . . F 3 23.761 25.052 34.714 0.63 31.31 ? O1 SO4 1005 A 1 HETATM 3 O O2 SO4 . . . F 3 22.448 24.259 32.935 0.63 25.09 ? O2 SO4 1005 A 1 HETATM 4 O O3 SO4 . . . F 3 22.571 23.057 35.079 0.63 25.52 ? O3 SO4 1005 A 1 HETATM 5 O O4 SO4 . . . F 3 21.388 25.112 34.853 0.63 29.15 ? O4 SO4 1005 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 5 #