data_6POG # _model_server_result.job_id '_evW-VgpLR1DC9GHdAv0cA' _model_server_result.datetime_utc '2024-11-22 16:33:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":904}' # _entry.id 6POG # _exptl.entry_id 6POG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6POG _cell.length_a 41.873 _cell.length_b 90.439 _cell.length_c 171.576 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6POG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG B 901 NAG 3 n C NAG 2 C 2 NAG B 902 NAG 3 n C FUC 3 C 3 FUC B 904 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 6 B CYS 401 1_555 B SG CYS 18 B CYS 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 12 B CYS 407 1_555 B SG CYS 27 B CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 B SG CYS 29 B CYS 424 1_555 B SG CYS 43 B CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 49 B CYS 444 1_555 B SG CYS 62 B CYS 457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 56 B CYS 451 1_555 B SG CYS 71 B CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 73 B CYS 468 1_555 B SG CYS 85 B CYS 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 B SG CYS 91 B CYS 486 1_555 B SG CYS 104 B CYS 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 B SG CYS 98 B CYS 493 1_555 B SG CYS 113 B CYS 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 B SG CYS 115 B CYS 510 1_555 B SG CYS 126 B CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 B SG CYS 130 B CYS 525 1_555 B SG CYS 140 B CYS 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf11 B SG CYS 134 B CYS 529 1_555 B SG CYS 146 B CYS 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf12 B SG CYS 148 B CYS 543 1_555 B SG CYS 157 B CYS 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 B SG CYS 164 B CYS 559 1_555 B SG CYS 177 B CYS 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf14 B SG CYS 171 B CYS 566 1_555 B SG CYS 186 B CYS 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf15 B SG CYS 188 B CYS 583 1_555 B SG CYS 205 B CYS 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf16 B SG CYS 211 B CYS 606 1_555 B SG CYS 224 B CYS 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf17 B SG CYS 218 B CYS 613 1_555 B SG CYS 233 B CYS 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf18 B SG CYS 235 B CYS 630 1_555 B SG CYS 241 B CYS 636 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 B ND2 ASN 122 B ASN 517 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale2 B OG1 THR 153 B THR 548 1_555 D C1 NAG . B NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale4 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? metalc ? metalc1 B OD1 ASP 45 B ASP 440 1_555 E CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc2 B OD2 ASP 45 B ASP 440 1_555 E CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc3 B O ILE 46 B ILE 441 1_555 E CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc4 B OE1 GLU 48 B GLU 443 1_555 E CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc5 B OD1 ASN 64 B ASN 459 1_555 E CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc6 B O THR 65 B THR 460 1_555 E CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc7 B O SER 68 B SER 463 1_555 E CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc8 B OD1 ASP 160 B ASP 555 1_555 F CA CA . B CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc9 B OD2 ASP 160 B ASP 555 1_555 F CA CA . B CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc10 B O ILE 161 B ILE 556 1_555 F CA CA . B CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc11 B OE1 GLU 163 B GLU 558 1_555 F CA CA . B CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc12 B OE2 GLU 163 B GLU 558 1_555 F CA CA . B CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc13 B OD1 ASN 179 B ASN 574 1_555 F CA CA . B CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc14 B O LEU 180 B LEU 575 1_555 F CA CA . B CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc15 B O TRP 183 B TRP 578 1_555 F CA CA . B CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc16 B OD1 ASP 207 B ASP 602 1_555 G CA CA . B CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc17 B OD2 ASP 207 B ASP 602 1_555 G CA CA . B CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc18 B O ILE 208 B ILE 603 1_555 G CA CA . B CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc19 B OE1 GLU 210 B GLU 605 1_555 G CA CA . B CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc20 B OD1 ASN 226 B ASN 621 1_555 G CA CA . B CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc21 B O LEU 227 B LEU 622 1_555 G CA CA . B CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc22 B O GLY 230 B GLY 625 1_555 G CA CA . B CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.061 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 258 n n C1 O1 NAG sing 259 n n C1 O5 NAG sing 260 n n C1 H1 NAG sing 261 n n C2 C3 NAG sing 262 n n C2 N2 NAG sing 263 n n C2 H2 NAG sing 264 n n C3 C4 NAG sing 265 n n C3 O3 NAG sing 266 n n C3 H3 NAG sing 267 n n C4 C5 NAG sing 268 n n C4 O4 NAG sing 269 n n C4 H4 NAG sing 270 n n C5 C6 NAG sing 271 n n C5 O5 NAG sing 272 n n C5 H5 NAG sing 273 n n C6 O6 NAG sing 274 n n C6 H61 NAG sing 275 n n C6 H62 NAG sing 276 n n C7 C8 NAG sing 277 n n C7 N2 NAG sing 278 n n C7 O7 NAG doub 279 n n C8 H81 NAG sing 280 n n C8 H82 NAG sing 281 n n C8 H83 NAG sing 282 n n N2 HN2 NAG sing 283 n n O1 HO1 NAG sing 284 n n O3 HO3 NAG sing 285 n n O4 HO4 NAG sing 286 n n O6 HO6 NAG sing 287 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6POG _atom_sites.fract_transf_matrix[1][1] 0.023882 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011057 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005828 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG B 1 904 921 NAG NAG . E 5 CA B 1 905 951 CA CA . F 5 CA B 1 906 952 CA CA . G 5 CA B 1 907 953 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 4 -17.673 -3.249 -66.887 1 99.23 ? C1 NAG 904 B 1 HETATM 2 C C2 NAG . . . D 4 -17.388 -1.926 -67.585 1 123.75 ? C2 NAG 904 B 1 HETATM 3 C C3 NAG . . . D 4 -16.685 -2.176 -68.915 1 142.66 ? C3 NAG 904 B 1 HETATM 4 C C4 NAG . . . D 4 -15.441 -3.029 -68.703 1 152.53 ? C4 NAG 904 B 1 HETATM 5 C C5 NAG . . . D 4 -15.788 -4.3 -67.93 1 142 ? C5 NAG 904 B 1 HETATM 6 C C6 NAG . . . D 4 -14.572 -5.115 -67.558 1 137 ? C6 NAG 904 B 1 HETATM 7 C C7 NAG . . . D 4 -19.133 -0.364 -66.851 1 126.58 ? C7 NAG 904 B 1 HETATM 8 C C8 NAG . . . D 4 -20.4 0.344 -67.225 1 121.1 ? C8 NAG 904 B 1 HETATM 9 N N2 NAG . . . D 4 -18.611 -1.166 -67.785 1 127.53 ? N2 NAG 904 B 1 HETATM 10 O O3 NAG . . . D 4 -16.329 -0.932 -69.505 1 150.66 ? O3 NAG 904 B 1 HETATM 11 O O4 NAG . . . D 4 -14.879 -3.388 -69.961 1 164.62 ? O4 NAG 904 B 1 HETATM 12 O O5 NAG . . . D 4 -16.454 -3.966 -66.702 1 126.7 ? O5 NAG 904 B 1 HETATM 13 O O6 NAG . . . D 4 -14.935 -6.397 -67.062 1 138.62 ? O6 NAG 904 B 1 HETATM 14 O O7 NAG . . . D 4 -18.605 -0.217 -65.752 1 127.65 ? O7 NAG 904 B 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #