data_6PP8
#
_model_server_result.job_id            8dQuKPGpS1St7Awntn3q5Q 
_model_server_result.datetime_utc      '2024-10-10 04:19:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pp8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":600}' 
#
_entry.id    6PP8 
#
_exptl.entry_id    6PP8 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.247 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PP8 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PP8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            E 
_struct_conn.ptnr1_label_atom_id            C 
_struct_conn.ptnr1_label_comp_id            SER 
_struct_conn.ptnr1_label_seq_id             62 
_struct_conn.ptnr1_auth_asym_id             E 
_struct_conn.ptnr1_auth_comp_id             SER 
_struct_conn.ptnr1_auth_seq_id              123 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            L 
_struct_conn.ptnr2_label_atom_id            N7 
_struct_conn.ptnr2_label_comp_id            AGS 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             E 
_struct_conn.ptnr2_auth_comp_id             AGS 
_struct_conn.ptnr2_auth_seq_id              600 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.452 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C10 H16 N5 O12 P3 S' 
_chem_comp.formula_weight    523.247 
_chem_comp.id                AGS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" 
#
_atom_sites.entry_id                     6PP8 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 3 AGS A 1 600 600 AGS AGS . 
I 3 AGS B 1 600 600 AGS AGS . 
J 3 AGS C 1 600 600 AGS AGS . 
K 3 AGS D 1 600 600 AGS AGS . 
L 3 AGS E 1 600 600 AGS AGS . 
M 4 ADP F 1 600 600 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG AGS . . . H 3 110.874 72.456 107.54 1 213.49 ? PG AGS 600 A 1 
HETATM 2 S S1G AGS . . . H 3 109.621 73.483 108.623 1 213.49 ? S1G AGS 600 A 1 
HETATM 3 O O2G AGS . . . H 3 111.043 73.132 106.149 1 213.49 ? O2G AGS 600 A 1 
HETATM 4 O O3G AGS . . . H 3 112.257 72.402 108.255 1 213.49 ? O3G AGS 600 A 1 
HETATM 5 P PB AGS . . . H 3 111.228 69.942 106.589 1 213.49 ? PB AGS 600 A 1 
HETATM 6 O O1B AGS . . . H 3 111.604 70.452 105.252 1 213.49 ? O1B AGS 600 A 1 
HETATM 7 O O2B AGS . . . H 3 112.437 69.672 107.489 1 213.49 ? O2B AGS 600 A 1 
HETATM 8 O O3B AGS . . . H 3 110.336 71.007 107.347 1 213.49 ? O3B AGS 600 A 1 
HETATM 9 P PA AGS . . . H 3 110.594 67.5 107.641 1 213.49 ? PA AGS 600 A 1 
HETATM 10 O O1A AGS . . . H 3 109.935 67.976 108.878 1 213.49 ? O1A AGS 600 A 1 
HETATM 11 O O2A AGS . . . H 3 112.094 67.239 107.805 1 213.49 ? O2A AGS 600 A 1 
HETATM 12 O O3A AGS . . . H 3 110.449 68.566 106.476 1 213.49 ? O3A AGS 600 A 1 
HETATM 13 O O5' AGS . . . H 3 109.824 66.211 107.136 1 213.49 ? O5' AGS 600 A 1 
HETATM 14 C C5' AGS . . . H 3 108.416 66.027 107.386 1 213.49 ? C5' AGS 600 A 1 
HETATM 15 C C4' AGS . . . H 3 108.048 64.599 107.061 1 213.49 ? C4' AGS 600 A 1 
HETATM 16 O O4' AGS . . . H 3 108.384 64.317 105.685 1 213.49 ? O4' AGS 600 A 1 
HETATM 17 C C3' AGS . . . H 3 108.78 63.546 107.885 1 213.49 ? C3' AGS 600 A 1 
HETATM 18 O O3' AGS . . . H 3 108.074 63.248 109.084 1 213.49 ? O3' AGS 600 A 1 
HETATM 19 C C2' AGS . . . H 3 108.819 62.351 106.934 1 213.49 ? C2' AGS 600 A 1 
HETATM 20 O O2' AGS . . . H 3 107.612 61.599 106.967 1 213.49 ? O2' AGS 600 A 1 
HETATM 21 C C1' AGS . . . H 3 108.991 63.041 105.579 1 213.49 ? C1' AGS 600 A 1 
HETATM 22 N N9 AGS . . . H 3 110.381 63.23 105.172 1 213.49 ? N9 AGS 600 A 1 
HETATM 23 C C8 AGS . . . H 3 111.023 64.422 104.964 1 213.49 ? C8 AGS 600 A 1 
HETATM 24 N N7 AGS . . . H 3 112.277 64.298 104.601 1 213.49 ? N7 AGS 600 A 1 
HETATM 25 C C5 AGS . . . H 3 112.474 62.926 104.569 1 213.49 ? C5 AGS 600 A 1 
HETATM 26 C C6 AGS . . . H 3 113.598 62.136 104.258 1 213.49 ? C6 AGS 600 A 1 
HETATM 27 N N6 AGS . . . H 3 114.782 62.638 103.903 1 213.49 ? N6 AGS 600 A 1 
HETATM 28 N N1 AGS . . . H 3 113.458 60.792 104.323 1 213.49 ? N1 AGS 600 A 1 
HETATM 29 C C2 AGS . . . H 3 112.273 60.285 104.678 1 213.49 ? C2 AGS 600 A 1 
HETATM 30 N N3 AGS . . . H 3 111.147 60.928 104.992 1 213.49 ? N3 AGS 600 A 1 
HETATM 31 C C4 AGS . . . H 3 111.314 62.255 104.919 1 213.49 ? C4 AGS 600 A 1 
HETATM 32 H "H5'1" AGS . . . H 3 107.899 66.633 106.828 1 213.49 ? "H5'1" AGS 600 A 1 
HETATM 33 H "H5'2" AGS . . . H 3 108.224 66.202 108.323 1 213.49 ? "H5'2" AGS 600 A 1 
HETATM 34 H H4' AGS . . . H 3 107.093 64.483 107.181 1 213.49 ? H4' AGS 600 A 1 
HETATM 35 H H3' AGS . . . H 3 109.682 63.845 108.082 1 213.49 ? H3' AGS 600 A 1 
HETATM 36 H HO3' AGS . . . H 3 107.909 62.377 109.119 1 213.49 ? HO3' AGS 600 A 1 
HETATM 37 H H2' AGS . . . H 3 109.582 61.784 107.133 1 213.49 ? H2' AGS 600 A 1 
HETATM 38 H HO2' AGS . . . H 3 106.919 62.151 107.027 1 213.49 ? HO2' AGS 600 A 1 
HETATM 39 H H1' AGS . . . H 3 108.525 62.523 104.901 1 213.49 ? H1' AGS 600 A 1 
HETATM 40 H H8 AGS . . . H 3 110.589 65.281 105.074 1 213.49 ? H8 AGS 600 A 1 
HETATM 41 H HN61 AGS . . . H 3 114.962 63.518 104.045 1 213.49 ? HN61 AGS 600 A 1 
HETATM 42 H HN62 AGS . . . H 3 115.407 62.102 103.518 1 213.49 ? HN62 AGS 600 A 1 
HETATM 43 H H2 AGS . . . H 3 112.225 59.314 104.709 1 213.49 ? H2 AGS 600 A 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           43 
#