data_6PP8
#
_model_server_result.job_id            -BD7dOrHY8DxQF-SWIKTcQ 
_model_server_result.datetime_utc      '2024-10-10 04:22:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pp8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":600}' 
#
_entry.id    6PP8 
#
_exptl.entry_id    6PP8 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.247 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PP8 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PP8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            E 
_struct_conn.ptnr1_label_atom_id            C 
_struct_conn.ptnr1_label_comp_id            SER 
_struct_conn.ptnr1_label_seq_id             62 
_struct_conn.ptnr1_auth_asym_id             E 
_struct_conn.ptnr1_auth_comp_id             SER 
_struct_conn.ptnr1_auth_seq_id              123 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            L 
_struct_conn.ptnr2_label_atom_id            N7 
_struct_conn.ptnr2_label_comp_id            AGS 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             E 
_struct_conn.ptnr2_auth_comp_id             AGS 
_struct_conn.ptnr2_auth_seq_id              600 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.452 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C10 H16 N5 O12 P3 S' 
_chem_comp.formula_weight    523.247 
_chem_comp.id                AGS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" 
#
_atom_sites.entry_id                     6PP8 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 3 AGS A 1 600 600 AGS AGS . 
I 3 AGS B 1 600 600 AGS AGS . 
J 3 AGS C 1 600 600 AGS AGS . 
K 3 AGS D 1 600 600 AGS AGS . 
L 3 AGS E 1 600 600 AGS AGS . 
M 4 ADP F 1 600 600 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG AGS . . . L 3 129.883 121.501 104.969 1 161.63 ? PG AGS 600 E 1 
HETATM 2 S S1G AGS . . . L 3 128.55 122.316 103.806 1 161.63 ? S1G AGS 600 E 1 
HETATM 3 O O2G AGS . . . L 3 129.353 121.47 106.432 1 161.63 ? O2G AGS 600 E 1 
HETATM 4 O O3G AGS . . . L 3 130.165 120.046 104.492 1 161.63 ? O3G AGS 600 E 1 
HETATM 5 P PB AGS . . . L 3 131.212 123.822 105.434 1 161.63 ? PB AGS 600 E 1 
HETATM 6 O O1B AGS . . . L 3 130.588 124.722 104.437 1 161.63 ? O1B AGS 600 E 1 
HETATM 7 O O2B AGS . . . L 3 130.491 123.814 106.784 1 161.63 ? O2B AGS 600 E 1 
HETATM 8 O O3B AGS . . . L 3 131.201 122.328 104.915 1 161.63 ? O3B AGS 600 E 1 
HETATM 9 P PA AGS . . . L 3 133.435 123.582 106.959 1 161.63 ? PA AGS 600 E 1 
HETATM 10 O O1A AGS . . . L 3 133.204 122.121 106.956 1 161.63 ? O1A AGS 600 E 1 
HETATM 11 O O2A AGS . . . L 3 132.936 124.304 108.214 1 161.63 ? O2A AGS 600 E 1 
HETATM 12 O O3A AGS . . . L 3 132.701 124.258 105.733 1 161.63 ? O3A AGS 600 E 1 
HETATM 13 O O5' AGS . . . L 3 134.977 123.829 106.715 1 161.63 ? O5' AGS 600 E 1 
HETATM 14 C C5' AGS . . . L 3 135.907 122.727 106.712 1 161.63 ? C5' AGS 600 E 1 
HETATM 15 C C4' AGS . . . L 3 137.299 123.262 106.934 1 161.63 ? C4' AGS 600 E 1 
HETATM 16 O O4' AGS . . . L 3 137.59 124.275 105.949 1 161.63 ? O4' AGS 600 E 1 
HETATM 17 C C3' AGS . . . L 3 137.526 123.942 108.278 1 161.63 ? C3' AGS 600 E 1 
HETATM 18 O O3' AGS . . . L 3 137.88 122.995 109.279 1 161.63 ? O3' AGS 600 E 1 
HETATM 19 C C2' AGS . . . L 3 138.676 124.9 107.971 1 161.63 ? C2' AGS 600 E 1 
HETATM 20 O O2' AGS . . . L 3 139.94 124.254 108.066 1 161.63 ? O2' AGS 600 E 1 
HETATM 21 C C1' AGS . . . L 3 138.377 125.303 106.522 1 161.63 ? C1' AGS 600 E 1 
HETATM 22 N N9 AGS . . . L 3 137.653 126.563 106.391 1 161.63 ? N9 AGS 600 E 1 
HETATM 23 C C8 AGS . . . L 3 136.397 126.744 105.877 1 161.63 ? C8 AGS 600 E 1 
HETATM 24 N N7 AGS . . . L 3 135.98 127.992 105.891 1 161.63 ? N7 AGS 600 E 1 
HETATM 25 C C5 AGS . . . L 3 137.064 128.684 106.443 1 161.63 ? C5 AGS 600 E 1 
HETATM 26 C C6 AGS . . . L 3 137.286 130.052 106.729 1 161.63 ? C6 AGS 600 E 1 
HETATM 27 N N6 AGS . . . L 3 136.393 131.013 106.492 1 161.63 ? N6 AGS 600 E 1 
HETATM 28 N N1 AGS . . . L 3 138.469 130.393 107.284 1 161.63 ? N1 AGS 600 E 1 
HETATM 29 C C2 AGS . . . L 3 139.366 129.437 107.531 1 161.63 ? C2 AGS 600 E 1 
HETATM 30 N N3 AGS . . . L 3 139.274 128.125 107.304 1 161.63 ? N3 AGS 600 E 1 
HETATM 31 C C4 AGS . . . L 3 138.093 127.812 106.756 1 161.63 ? C4 AGS 600 E 1 
HETATM 32 H "H5'1" AGS . . . L 3 135.864 122.263 105.859 1 161.63 ? "H5'1" AGS 600 E 1 
HETATM 33 H "H5'2" AGS . . . L 3 135.683 122.111 107.431 1 161.63 ? "H5'2" AGS 600 E 1 
HETATM 34 H H4' AGS . . . L 3 137.937 122.537 106.839 1 161.63 ? H4' AGS 600 E 1 
HETATM 35 H H3' AGS . . . L 3 136.735 124.439 108.54 1 161.63 ? H3' AGS 600 E 1 
HETATM 36 H HO3' AGS . . . L 3 138.647 123.235 109.652 1 161.63 ? HO3' AGS 600 E 1 
HETATM 37 H H2' AGS . . . L 3 138.64 125.67 108.558 1 161.63 ? H2' AGS 600 E 1 
HETATM 38 H HO2' AGS . . . L 3 139.827 123.376 108.014 1 161.63 ? HO2' AGS 600 E 1 
HETATM 39 H H1' AGS . . . L 3 139.218 125.368 106.036 1 161.63 ? H1' AGS 600 E 1 
HETATM 40 H H8 AGS . . . L 3 135.893 125.982 105.561 1 161.63 ? H8 AGS 600 E 1 
HETATM 41 H HN61 AGS . . . L 3 135.596 130.805 106.105 1 161.63 ? HN61 AGS 600 E 1 
HETATM 42 H HN62 AGS . . . L 3 136.578 131.873 106.719 1 161.63 ? HN62 AGS 600 E 1 
HETATM 43 H H2 AGS . . . L 3 140.2 129.739 107.929 1 161.63 ? H2 AGS 600 E 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           43 
#