data_6PP8
#
_model_server_result.job_id            feURSdF5_vtQ9YvzLadg8g 
_model_server_result.datetime_utc      '2024-10-10 04:21:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pp8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":600}' 
#
_entry.id    6PP8 
#
_exptl.entry_id    6PP8 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PP8 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PP8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             M 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            E 
_struct_conn.ptnr1_label_atom_id            C 
_struct_conn.ptnr1_label_comp_id            SER 
_struct_conn.ptnr1_label_seq_id             62 
_struct_conn.ptnr1_auth_asym_id             E 
_struct_conn.ptnr1_auth_comp_id             SER 
_struct_conn.ptnr1_auth_seq_id              123 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            L 
_struct_conn.ptnr2_label_atom_id            N7 
_struct_conn.ptnr2_label_comp_id            AGS 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             E 
_struct_conn.ptnr2_auth_comp_id             AGS 
_struct_conn.ptnr2_auth_seq_id              600 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.452 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6PP8 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 3 AGS A 1 600 600 AGS AGS . 
I 3 AGS B 1 600 600 AGS AGS . 
J 3 AGS C 1 600 600 AGS AGS . 
K 3 AGS D 1 600 600 AGS AGS . 
L 3 AGS E 1 600 600 AGS AGS . 
M 4 ADP F 1 600 600 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . M 4 137.159 93.026 99.155 1 200.28 ? PB ADP 600 F 1 
HETATM 2 O O1B ADP . . . M 4 138.537 93.598 98.924 1 200.28 ? O1B ADP 600 F 1 
HETATM 3 O O2B ADP . . . M 4 136.464 93.548 100.388 1 200.28 ? O2B ADP 600 F 1 
HETATM 4 O O3B ADP . . . M 4 136.289 92.964 97.924 1 200.28 ? O3B ADP 600 F 1 
HETATM 5 P PA ADP . . . M 4 137.947 91.091 100.978 1 200.28 ? PA ADP 600 F 1 
HETATM 6 O O1A ADP . . . M 4 139.201 91.876 101.28 1 200.28 ? O1A ADP 600 F 1 
HETATM 7 O O2A ADP . . . M 4 136.753 91.2 101.894 1 200.28 ? O2A ADP 600 F 1 
HETATM 8 O O3A ADP . . . M 4 137.454 91.483 99.5 1 200.28 ? O3A ADP 600 F 1 
HETATM 9 O O5' ADP . . . M 4 138.345 89.538 100.855 1 200.28 ? O5' ADP 600 F 1 
HETATM 10 C C5' ADP . . . M 4 138.652 88.826 102.05 1 200.28 ? C5' ADP 600 F 1 
HETATM 11 C C4' ADP . . . M 4 139.108 87.404 101.751 1 200.28 ? C4' ADP 600 F 1 
HETATM 12 O O4' ADP . . . M 4 140.251 87.405 100.889 1 200.28 ? O4' ADP 600 F 1 
HETATM 13 C C3' ADP . . . M 4 139.497 86.687 103.034 1 200.28 ? C3' ADP 600 F 1 
HETATM 14 O O3' ADP . . . M 4 138.664 85.541 103.239 1 200.28 ? O3' ADP 600 F 1 
HETATM 15 C C2' ADP . . . M 4 140.949 86.292 102.859 1 200.28 ? C2' ADP 600 F 1 
HETATM 16 O O2' ADP . . . M 4 141.169 84.92 103.202 1 200.28 ? O2' ADP 600 F 1 
HETATM 17 C C1' ADP . . . M 4 141.274 86.541 101.394 1 200.28 ? C1' ADP 600 F 1 
HETATM 18 N N9 ADP . . . M 4 142.604 87.183 101.24 1 200.28 ? N9 ADP 600 F 1 
HETATM 19 C C8 ADP . . . M 4 142.846 88.302 100.533 1 200.28 ? C8 ADP 600 F 1 
HETATM 20 N N7 ADP . . . M 4 144.162 88.63 100.581 1 200.28 ? N7 ADP 600 F 1 
HETATM 21 C C5 ADP . . . M 4 144.785 87.703 101.327 1 200.28 ? C5 ADP 600 F 1 
HETATM 22 C C6 ADP . . . M 4 146.171 87.451 101.777 1 200.28 ? C6 ADP 600 F 1 
HETATM 23 N N6 ADP . . . M 4 147.18 88.282 101.425 1 200.28 ? N6 ADP 600 F 1 
HETATM 24 N N1 ADP . . . M 4 146.392 86.363 102.549 1 200.28 ? N1 ADP 600 F 1 
HETATM 25 C C2 ADP . . . M 4 145.4 85.526 102.909 1 200.28 ? C2 ADP 600 F 1 
HETATM 26 N N3 ADP . . . M 4 144.12 85.701 102.532 1 200.28 ? N3 ADP 600 F 1 
HETATM 27 C C4 ADP . . . M 4 143.756 86.745 101.751 1 200.28 ? C4 ADP 600 F 1 
HETATM 28 H "H5'1" ADP . . . M 4 137.768 88.798 102.69 1 200.28 ? "H5'1" ADP 600 F 1 
HETATM 29 H "H5'2" ADP . . . M 4 139.441 89.356 102.588 1 200.28 ? "H5'2" ADP 600 F 1 
HETATM 30 H H4' ADP . . . M 4 138.28 86.861 101.276 1 200.28 ? H4' ADP 600 F 1 
HETATM 31 H H3' ADP . . . M 4 139.409 87.383 103.88 1 200.28 ? H3' ADP 600 F 1 
HETATM 32 H HO3' ADP . . . M 4 138.807 85.191 104.13 1 200.28 ? HO3' ADP 600 F 1 
HETATM 33 H H2' ADP . . . M 4 141.564 86.946 103.493 1 200.28 ? H2' ADP 600 F 1 
HETATM 34 H HO2' ADP . . . M 4 141.113 84.814 104.162 1 200.28 ? HO2' ADP 600 F 1 
HETATM 35 H H1' ADP . . . M 4 141.256 85.581 100.857 1 200.28 ? H1' ADP 600 F 1 
HETATM 36 H H8 ADP . . . M 4 142.091 88.867 100.001 1 200.28 ? H8 ADP 600 F 1 
HETATM 37 H HN61 ADP . . . M 4 146.989 89.088 100.847 1 200.28 ? HN61 ADP 600 F 1 
HETATM 38 H HN62 ADP . . . M 4 148.121 88.096 101.739 1 200.28 ? HN62 ADP 600 F 1 
HETATM 39 H H2 ADP . . . M 4 145.643 84.671 103.529 1 200.28 ? H2 ADP 600 F 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           39 
#