data_6PP9
#
_model_server_result.job_id            l-UHSd7gnaNC2Sx3bw88YA 
_model_server_result.datetime_utc      '2024-11-05 12:37:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pp9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":801}' 
#
_entry.id    6PP9 
#
_exptl.entry_id    6PP9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6PP9 
_cell.length_a            116.697 
_cell.length_b            116.697 
_cell.length_c            130.944 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PP9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 141 A ASN 581 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc2 A OD2 ASP 154 A ASP 594 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc3 C O2G ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc4 C O1B ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc5 C O1A ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc6 D MG MG . A MG 802 1_555 M O HOH . A HOH 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc7 B OD1 ASN 199 B ASN 195 1_555 G MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? 
metalc ? metalc8 B OD2 ASP 212 B ASP 208 1_555 G MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc9 F O1B ANP . B ANP 801 1_555 G MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc10 F O2A ANP . B ANP 801 1_555 G MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? 
metalc ? metalc11 G MG MG . B MG 802 1_555 N O HOH . B HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc12 G MG MG . B MG 802 1_555 N O HOH . B HOH 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     6PP9 
_atom_sites.fract_transf_matrix[1][1]    0.008569 
_atom_sites.fract_transf_matrix[1][2]    0.004947 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009895 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007637 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ANP A 1 801 801 ANP ANP . 
D 4 MG A 1 802 802 MG MG . 
E 5 CL A 1 803 3 CL CL . 
F 3 ANP B 1 801 801 ANP ANP . 
G 4 MG B 1 802 802 MG MG . 
H 6 LCJ B 1 803 901 LCJ GDC . 
I 7 SO4 B 1 804 1 SO4 SO4 . 
J 5 CL B 1 805 4 CL CL . 
K 8 GOL B 1 806 100 GOL GOL . 
L 8 GOL B 1 807 101 GOL GOL . 
M 9 HOH A 1 901 75 HOH HOH . 
M 9 HOH A 2 902 1 HOH HOH . 
M 9 HOH A 3 903 23 HOH HOH . 
M 9 HOH A 4 904 97 HOH HOH . 
M 9 HOH A 5 905 57 HOH HOH . 
M 9 HOH A 6 906 44 HOH HOH . 
M 9 HOH A 7 907 11 HOH HOH . 
M 9 HOH A 8 908 22 HOH HOH . 
M 9 HOH A 9 909 55 HOH HOH . 
M 9 HOH A 10 910 40 HOH HOH . 
M 9 HOH A 11 911 95 HOH HOH . 
M 9 HOH A 12 912 56 HOH HOH . 
M 9 HOH A 13 913 25 HOH HOH . 
M 9 HOH A 14 914 29 HOH HOH . 
M 9 HOH A 15 915 3 HOH HOH . 
M 9 HOH A 16 916 26 HOH HOH . 
M 9 HOH A 17 917 69 HOH HOH . 
M 9 HOH A 18 918 30 HOH HOH . 
M 9 HOH A 19 919 16 HOH HOH . 
M 9 HOH A 20 920 4 HOH HOH . 
M 9 HOH A 21 921 81 HOH HOH . 
M 9 HOH A 22 922 50 HOH HOH . 
M 9 HOH A 23 923 64 HOH HOH . 
M 9 HOH A 24 924 78 HOH HOH . 
M 9 HOH A 25 925 58 HOH HOH . 
M 9 HOH A 26 926 14 HOH HOH . 
M 9 HOH A 27 927 80 HOH HOH . 
M 9 HOH A 28 928 72 HOH HOH . 
M 9 HOH A 29 929 96 HOH HOH . 
M 9 HOH A 30 930 93 HOH HOH . 
M 9 HOH A 31 931 89 HOH HOH . 
M 9 HOH A 32 932 91 HOH HOH . 
M 9 HOH A 33 933 92 HOH HOH . 
M 9 HOH A 34 934 90 HOH HOH . 
M 9 HOH A 35 935 77 HOH HOH . 
M 9 HOH A 36 936 83 HOH HOH . 
M 9 HOH A 37 937 68 HOH HOH . 
N 9 HOH B 1 901 17 HOH HOH . 
N 9 HOH B 2 902 37 HOH HOH . 
N 9 HOH B 3 903 35 HOH HOH . 
N 9 HOH B 4 904 2 HOH HOH . 
N 9 HOH B 5 905 8 HOH HOH . 
N 9 HOH B 6 906 10 HOH HOH . 
N 9 HOH B 7 907 53 HOH HOH . 
N 9 HOH B 8 908 47 HOH HOH . 
N 9 HOH B 9 909 15 HOH HOH . 
N 9 HOH B 10 910 59 HOH HOH . 
N 9 HOH B 11 911 88 HOH HOH . 
N 9 HOH B 12 912 39 HOH HOH . 
N 9 HOH B 13 913 18 HOH HOH . 
N 9 HOH B 14 914 21 HOH HOH . 
N 9 HOH B 15 915 7 HOH HOH . 
N 9 HOH B 16 916 87 HOH HOH . 
N 9 HOH B 17 917 71 HOH HOH . 
N 9 HOH B 18 918 20 HOH HOH . 
N 9 HOH B 19 919 9 HOH HOH . 
N 9 HOH B 20 920 45 HOH HOH . 
N 9 HOH B 21 921 86 HOH HOH . 
N 9 HOH B 22 922 19 HOH HOH . 
N 9 HOH B 23 923 51 HOH HOH . 
N 9 HOH B 24 924 36 HOH HOH . 
N 9 HOH B 25 925 38 HOH HOH . 
N 9 HOH B 26 926 32 HOH HOH . 
N 9 HOH B 27 927 48 HOH HOH . 
N 9 HOH B 28 928 84 HOH HOH . 
N 9 HOH B 29 929 31 HOH HOH . 
N 9 HOH B 30 930 43 HOH HOH . 
N 9 HOH B 31 931 94 HOH HOH . 
N 9 HOH B 32 932 33 HOH HOH . 
N 9 HOH B 33 933 24 HOH HOH . 
N 9 HOH B 34 934 61 HOH HOH . 
N 9 HOH B 35 935 76 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . F 3 54.851 -24.094 10.518 1 44.4 ? PG ANP 801 B 1 
HETATM 2 O O1G ANP . . . F 3 56.217 -23.545 10.254 1 52.42 ? O1G ANP 801 B 1 
HETATM 3 O O2G ANP . . . F 3 53.819 -22.902 10.514 1 51.12 ? O2G ANP 801 B 1 
HETATM 4 O O3G ANP . . . F 3 54.456 -25.111 9.373 1 50.5 ? O3G ANP 801 B 1 
HETATM 5 P PB ANP . . . F 3 56.161 -25.77 12.38 1 36.86 ? PB ANP 801 B 1 
HETATM 6 O O1B ANP . . . F 3 57.388 -24.923 12.283 1 38.9 ? O1B ANP 801 B 1 
HETATM 7 O O2B ANP . . . F 3 56.039 -26.302 13.837 1 43.08 ? O2B ANP 801 B 1 
HETATM 8 N N3B ANP . . . F 3 54.788 -24.867 12.027 1 45.87 ? N3B ANP 801 B 1 
HETATM 9 P PA ANP . . . F 3 57.685 -27.602 11.012 1 40.07 ? PA ANP 801 B 1 
HETATM 10 O O1A ANP . . . F 3 57.556 -28.491 9.835 1 51.01 ? O1A ANP 801 B 1 
HETATM 11 O O2A ANP . . . F 3 58.643 -26.428 10.786 1 50.64 ? O2A ANP 801 B 1 
HETATM 12 O O3A ANP . . . F 3 56.272 -26.987 11.411 1 50.22 ? O3A ANP 801 B 1 
HETATM 13 O O5' ANP . . . F 3 58.142 -28.475 12.252 1 41.21 ? O5' ANP 801 B 1 
HETATM 14 C C5' ANP . . . F 3 57.247 -29.393 12.907 1 39.05 ? C5' ANP 801 B 1 
HETATM 15 C C4' ANP . . . F 3 57.775 -29.677 14.291 1 45.11 ? C4' ANP 801 B 1 
HETATM 16 O O4' ANP . . . F 3 58.918 -30.548 14.206 1 39.39 ? O4' ANP 801 B 1 
HETATM 17 C C3' ANP . . . F 3 58.285 -28.468 15.062 1 47.71 ? C3' ANP 801 B 1 
HETATM 18 O O3' ANP . . . F 3 57.217 -27.766 15.688 1 48.21 ? O3' ANP 801 B 1 
HETATM 19 C C2' ANP . . . F 3 59.228 -29.109 16.085 1 40.07 ? C2' ANP 801 B 1 
HETATM 20 O O2' ANP . . . F 3 58.538 -29.5 17.266 1 58.06 ? O2' ANP 801 B 1 
HETATM 21 C C1' ANP . . . F 3 59.751 -30.345 15.335 1 45.13 ? C1' ANP 801 B 1 
HETATM 22 N N9 ANP . . . F 3 61.131 -30.215 14.879 1 39.49 ? N9 ANP 801 B 1 
HETATM 23 C C8 ANP . . . F 3 61.582 -29.516 13.79 1 41.67 ? C8 ANP 801 B 1 
HETATM 24 N N7 ANP . . . F 3 62.882 -29.568 13.623 1 45.25 ? N7 ANP 801 B 1 
HETATM 25 C C5 ANP . . . F 3 63.317 -30.354 14.679 1 38.17 ? C5 ANP 801 B 1 
HETATM 26 C C6 ANP . . . F 3 64.597 -30.789 15.073 1 40.76 ? C6 ANP 801 B 1 
HETATM 27 N N6 ANP . . . F 3 65.72 -30.48 14.42 1 37 ? N6 ANP 801 B 1 
HETATM 28 N N1 ANP . . . F 3 64.684 -31.564 16.178 1 43.65 ? N1 ANP 801 B 1 
HETATM 29 C C2 ANP . . . F 3 63.563 -31.874 16.836 1 41.91 ? C2 ANP 801 B 1 
HETATM 30 N N3 ANP . . . F 3 62.305 -31.523 16.561 1 43.64 ? N3 ANP 801 B 1 
HETATM 31 C C4 ANP . . . F 3 62.249 -30.758 15.463 1 41.96 ? C4 ANP 801 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          21 
_model_server_stats.element_count           31 
#