data_6PP9 # _model_server_result.job_id dVO2Zyn3LUhgA47WTCS2aw _model_server_result.datetime_utc '2024-11-05 12:40:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pp9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":807}' # _entry.id 6PP9 # _exptl.entry_id 6PP9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6PP9 _cell.length_a 116.697 _cell.length_b 116.697 _cell.length_c 130.944 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PP9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 K N N ? 8 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 141 A ASN 581 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc2 A OD2 ASP 154 A ASP 594 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc3 C O2G ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc4 C O1B ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc5 C O1A ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc6 D MG MG . A MG 802 1_555 M O HOH . A HOH 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc7 B OD1 ASN 199 B ASN 195 1_555 G MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc8 B OD2 ASP 212 B ASP 208 1_555 G MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc9 F O1B ANP . B ANP 801 1_555 G MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc10 F O2A ANP . B ANP 801 1_555 G MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc11 G MG MG . B MG 802 1_555 N O HOH . B HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc12 G MG MG . B MG 802 1_555 N O HOH . B HOH 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 179 n n C1 C2 GOL sing 180 n n C1 H11 GOL sing 181 n n C1 H12 GOL sing 182 n n O1 HO1 GOL sing 183 n n C2 O2 GOL sing 184 n n C2 C3 GOL sing 185 n n C2 H2 GOL sing 186 n n O2 HO2 GOL sing 187 n n C3 O3 GOL sing 188 n n C3 H31 GOL sing 189 n n C3 H32 GOL sing 190 n n O3 HO3 GOL sing 191 n n # _atom_sites.entry_id 6PP9 _atom_sites.fract_transf_matrix[1][1] 0.008569 _atom_sites.fract_transf_matrix[1][2] 0.004947 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009895 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007637 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP A 1 801 801 ANP ANP . D 4 MG A 1 802 802 MG MG . E 5 CL A 1 803 3 CL CL . F 3 ANP B 1 801 801 ANP ANP . G 4 MG B 1 802 802 MG MG . H 6 LCJ B 1 803 901 LCJ GDC . I 7 SO4 B 1 804 1 SO4 SO4 . J 5 CL B 1 805 4 CL CL . K 8 GOL B 1 806 100 GOL GOL . L 8 GOL B 1 807 101 GOL GOL . M 9 HOH A 1 901 75 HOH HOH . M 9 HOH A 2 902 1 HOH HOH . M 9 HOH A 3 903 23 HOH HOH . M 9 HOH A 4 904 97 HOH HOH . M 9 HOH A 5 905 57 HOH HOH . M 9 HOH A 6 906 44 HOH HOH . M 9 HOH A 7 907 11 HOH HOH . M 9 HOH A 8 908 22 HOH HOH . M 9 HOH A 9 909 55 HOH HOH . M 9 HOH A 10 910 40 HOH HOH . M 9 HOH A 11 911 95 HOH HOH . M 9 HOH A 12 912 56 HOH HOH . M 9 HOH A 13 913 25 HOH HOH . M 9 HOH A 14 914 29 HOH HOH . M 9 HOH A 15 915 3 HOH HOH . M 9 HOH A 16 916 26 HOH HOH . M 9 HOH A 17 917 69 HOH HOH . M 9 HOH A 18 918 30 HOH HOH . M 9 HOH A 19 919 16 HOH HOH . M 9 HOH A 20 920 4 HOH HOH . M 9 HOH A 21 921 81 HOH HOH . M 9 HOH A 22 922 50 HOH HOH . M 9 HOH A 23 923 64 HOH HOH . M 9 HOH A 24 924 78 HOH HOH . M 9 HOH A 25 925 58 HOH HOH . M 9 HOH A 26 926 14 HOH HOH . M 9 HOH A 27 927 80 HOH HOH . M 9 HOH A 28 928 72 HOH HOH . M 9 HOH A 29 929 96 HOH HOH . M 9 HOH A 30 930 93 HOH HOH . M 9 HOH A 31 931 89 HOH HOH . M 9 HOH A 32 932 91 HOH HOH . M 9 HOH A 33 933 92 HOH HOH . M 9 HOH A 34 934 90 HOH HOH . M 9 HOH A 35 935 77 HOH HOH . M 9 HOH A 36 936 83 HOH HOH . M 9 HOH A 37 937 68 HOH HOH . N 9 HOH B 1 901 17 HOH HOH . N 9 HOH B 2 902 37 HOH HOH . N 9 HOH B 3 903 35 HOH HOH . N 9 HOH B 4 904 2 HOH HOH . N 9 HOH B 5 905 8 HOH HOH . N 9 HOH B 6 906 10 HOH HOH . N 9 HOH B 7 907 53 HOH HOH . N 9 HOH B 8 908 47 HOH HOH . N 9 HOH B 9 909 15 HOH HOH . N 9 HOH B 10 910 59 HOH HOH . N 9 HOH B 11 911 88 HOH HOH . N 9 HOH B 12 912 39 HOH HOH . N 9 HOH B 13 913 18 HOH HOH . N 9 HOH B 14 914 21 HOH HOH . N 9 HOH B 15 915 7 HOH HOH . N 9 HOH B 16 916 87 HOH HOH . N 9 HOH B 17 917 71 HOH HOH . N 9 HOH B 18 918 20 HOH HOH . N 9 HOH B 19 919 9 HOH HOH . N 9 HOH B 20 920 45 HOH HOH . N 9 HOH B 21 921 86 HOH HOH . N 9 HOH B 22 922 19 HOH HOH . N 9 HOH B 23 923 51 HOH HOH . N 9 HOH B 24 924 36 HOH HOH . N 9 HOH B 25 925 38 HOH HOH . N 9 HOH B 26 926 32 HOH HOH . N 9 HOH B 27 927 48 HOH HOH . N 9 HOH B 28 928 84 HOH HOH . N 9 HOH B 29 929 31 HOH HOH . N 9 HOH B 30 930 43 HOH HOH . N 9 HOH B 31 931 94 HOH HOH . N 9 HOH B 32 932 33 HOH HOH . N 9 HOH B 33 933 24 HOH HOH . N 9 HOH B 34 934 61 HOH HOH . N 9 HOH B 35 935 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 8 66.553 3.513 18.344 1 59.35 ? C1 GOL 807 B 1 HETATM 2 O O1 GOL . . . L 8 66.246 3.959 19.628 1 74.11 ? O1 GOL 807 B 1 HETATM 3 C C2 GOL . . . L 8 65.866 4.484 17.358 1 53.5 ? C2 GOL 807 B 1 HETATM 4 O O2 GOL . . . L 8 64.483 4.436 17.46 1 60.83 ? O2 GOL 807 B 1 HETATM 5 C C3 GOL . . . L 8 66.363 4.05 15.961 1 51.55 ? C3 GOL 807 B 1 HETATM 6 O O3 GOL . . . L 8 67.754 3.987 16.028 1 56.95 ? O3 GOL 807 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #