data_6PPO # _model_server_result.job_id FqIkY_JjFOdMWxs1ErV8Eg _model_server_result.datetime_utc '2024-10-20 19:25:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ppo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":203}' # _entry.id 6PPO # _exptl.entry_id 6PPO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PPO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PPO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 300-meric 300 'complete icosahedral assembly' 1 ? pentameric 5 'icosahedral asymmetric unit' 2 ? 25-meric 25 'icosahedral pentamer' 3 ? 30-meric 30 'icosahedral 23 hexamer' 4 ? pentameric 5 'icosahedral asymmetric unit, std point frame' 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 (1-60) A,B,C,D,E,F,G,H 2 1 A,B,C,D,E,F,G,H 3 (1-5) A,B,C,D,E,F,G,H 4 (1,2,6,10,23,24) A,B,C,D,E,F,G,H 5 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.951057 0.309017 0.000001 -0.262866 0.809017 0.525731 0.162459 -0.5 0.850651 -313.90969 -267.02723 -127.826 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.309017 -0.951057 -0.000001 0.951057 0.309017 0.000001 -0.000001 -0.000001 1 409.06501 -64.7897 0.00031 3 'point symmetry operation' ? ? -0.809017 -0.587785 -0.000001 0.587785 -0.809017 0 -0.000001 0 1 597.09171 304.23313 0.00045 4 'point symmetry operation' ? ? -0.809017 0.587785 -0.000001 -0.587785 -0.809017 0 -0.000001 0 1 304.23359 597.09148 0.00023 5 'point symmetry operation' ? ? 0.309017 0.951057 -0.000001 -0.951057 0.309017 -0.000001 -0.000001 0.000001 1 -64.78938 409.06506 -0.00005 6 'point symmetry operation' ? ? -0.947214 -0.162459 0.276392 -0.162459 -0.5 -0.850651 0.276392 -0.850651 0.447214 456.70698 626.06599 280.76939 7 'point symmetry operation' ? ? -0.447213 0.850651 0.276393 -0.52573 0 -0.850651 -0.723607 -0.52573 0.447213 79.76063 592.0042 448.9453 8 'point symmetry operation' ? ? 0.670821 0.688191 0.276393 -0.162459 0.5 -0.850651 -0.723607 0.525732 0.447213 -158.29201 376.946 187.00486 9 'point symmetry operation' ? ? 0.861803 -0.425326 0.276394 0.425326 0.309017 -0.85065 0.276394 0.85065 0.447214 71.52971 278.09451 -143.05915 10 'point symmetry operation' ? ? -0.138197 -0.951057 0.276393 0.425326 -0.309017 -0.85065 0.894427 -0.000001 0.447214 451.61999 432.05913 -85.10948 11 'point symmetry operation' ? ? -0.861803 -0.425326 -0.276394 -0.425326 0.309017 0.85065 -0.276394 0.85065 -0.447214 638.62473 66.18085 217.47107 12 'point symmetry operation' ? ? -0.670821 0.688191 -0.276393 0.162459 0.5 0.850651 0.723607 0.525732 -0.447213 313.64794 -127.826 49.29462 13 'point symmetry operation' ? ? 0.447213 0.850651 -0.276393 0.52573 0 0.850651 0.723607 -0.52573 -0.447213 -5.34909 -93.76421 311.23465 14 'point symmetry operation' ? ? 0.947214 -0.162459 -0.276392 0.162459 -0.5 0.850651 -0.276392 -0.850651 -0.447214 122.47669 121.294 641.29893 15 'point symmetry operation' ? ? 0.138197 -0.951057 -0.276393 -0.425326 -0.309017 0.85065 -0.894427 -0.000001 -0.447214 520.4744 220.14548 583.34985 16 'point symmetry operation' ? ? 0.809017 0.587785 0.000001 0.587785 -0.809017 0 0.000001 0 -1 -98.85171 304.23314 498.23955 17 'point symmetry operation' ? ? 0.809017 -0.587785 0.000001 -0.587785 -0.809017 0 0.000001 0 -1 194.00641 597.09148 498.23978 18 'point symmetry operation' ? ? -0.309017 -0.951057 0.000001 -0.951057 0.309017 -0.000001 0.000001 -0.000001 -1 563.02938 409.06506 498.24005 19 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 498.24 0 498.24 20 'point symmetry operation' ? ? -0.309017 0.951057 0.000001 0.951057 0.309017 0.000001 0.000001 0.000001 -1 89.17499 -64.78969 498.23969 21 'point symmetry operation' ? ? -0.138197 -0.425326 0.894427 0.951057 -0.309017 0.000001 0.276393 0.85065 0.447214 166.68539 89.17493 -143.05908 22 'point symmetry operation' ? ? -0.447215 0 0.894427 0 -1 0 0.894427 0 0.447215 137.71065 498.23999 -85.10972 23 'point symmetry operation' ? ? -0.138197 0.425326 0.894427 -0.951057 -0.309017 -0.000001 0.276393 -0.85065 0.447214 -45.22906 563.02969 280.76901 24 'point symmetry operation' ? ? 0.361803 0.262866 0.894427 -0.587785 0.809017 0 -0.723607 -0.525731 0.447214 -129.31728 194.00686 448.94514 25 'point symmetry operation' ? ? 0.361803 -0.262866 0.894427 0.587785 0.809017 0 -0.723607 0.525731 0.447214 1.65305 -98.85149 187.00498 26 'point symmetry operation' ? ? 0.447213 -0.52573 0.723607 -0.850651 0 0.52573 -0.276393 -0.850651 -0.447213 88.41511 330.06425 641.2989 27 'point symmetry operation' ? ? -0.361803 -0.587785 0.723607 -0.262866 0.809017 0.525731 -0.894427 0 -0.447214 305.41655 -17.90724 583.34968 28 'point symmetry operation' ? ? -0.670821 0.162459 0.723607 0.688191 0.5 0.525732 -0.276393 0.850651 -0.447213 195.49814 -177.8523 217.47073 29 'point symmetry operation' ? ? -0.052787 0.688191 0.723607 0.688191 -0.5 0.525732 0.723607 0.525732 -0.447212 -89.43661 71.2677 49.29432 30 'point symmetry operation' ? ? 0.638196 0.262866 0.723608 -0.262866 -0.809017 0.525731 0.723608 -0.525731 -0.447212 -155.61756 385.17739 311.23454 31 'point symmetry operation' ? ? 0.052788 0.688191 -0.723607 -0.688191 -0.5 -0.525732 -0.723607 0.525732 0.447213 244.79255 676.09229 187.00516 32 'point symmetry operation' ? ? 0.670821 0.162459 -0.723607 -0.688191 0.5 -0.525732 0.276393 0.850651 0.447213 221.79819 426.9723 -143.05904 33 'point symmetry operation' ? ? 0.361803 -0.587785 -0.723607 0.262866 0.809017 -0.525731 0.894427 0 0.447214 485.68157 113.0626 -85.10946 34 'point symmetry operation' ? ? -0.447213 -0.52573 -0.723607 0.850651 0 -0.52573 0.276393 -0.850651 0.447213 671.76483 168.17574 280.76956 35 'point symmetry operation' ? ? -0.638195 0.262866 -0.723608 0.262866 -0.809017 -0.525731 -0.723608 -0.525731 0.447213 522.88723 516.14723 448.94564 36 'point symmetry operation' ? ? -0.361803 0.262866 -0.894427 0.587785 0.809017 0 0.723607 -0.525731 -0.447214 496.58695 -98.85149 311.23503 37 'point symmetry operation' ? ? 0.138197 0.425326 -0.894427 0.951057 -0.309017 0.000001 -0.276393 -0.85065 -0.447214 331.55461 89.17493 641.29909 38 'point symmetry operation' ? ? 0.447215 0 -0.894427 0 -1 0 -0.894427 0 -0.447215 360.52935 498.23999 583.34973 39 'point symmetry operation' ? ? 0.138197 -0.425326 -0.894427 -0.951057 -0.309017 -0.000001 -0.276393 0.85065 -0.447214 543.46906 563.02969 217.47099 40 'point symmetry operation' ? ? -0.361803 -0.262866 -0.894427 -0.587785 0.809017 0 0.723607 0.525731 -0.447214 627.55728 194.00685 49.29486 41 'point symmetry operation' ? ? -0.138197 0.951057 0.276393 -0.425326 -0.309017 0.85065 0.894427 0.000001 0.447214 -22.2344 220.14548 -85.10984 42 'point symmetry operation' ? ? 0.861803 0.425326 0.276394 -0.425326 0.309017 0.85065 0.276394 -0.85065 0.447214 -140.38473 66.18086 280.76894 43 'point symmetry operation' ? ? 0.670821 -0.688191 0.276393 0.162459 0.5 0.850651 -0.723607 -0.525732 0.447213 184.59205 -127.826 448.94538 44 'point symmetry operation' ? ? -0.447213 -0.850651 0.276393 0.52573 0 0.850651 -0.723607 0.52573 0.447213 503.58908 -93.76421 187.00536 45 'point symmetry operation' ? ? -0.947214 0.162459 0.276392 0.162459 -0.5 0.850651 0.276392 0.850651 0.447214 375.7633 121.29399 -143.05892 46 'point symmetry operation' ? ? 0.052788 -0.688191 -0.723607 0.688191 -0.5 0.525732 -0.723607 -0.525732 0.447213 587.67661 71.26769 448.94569 47 'point symmetry operation' ? ? -0.638196 -0.262866 -0.723608 -0.262866 -0.809017 0.525731 -0.723608 0.525731 0.447213 653.85756 385.17738 187.00547 48 'point symmetry operation' ? ? -0.447213 0.52573 -0.723607 -0.850651 0 0.52573 0.276393 0.850651 0.447213 409.82489 330.06425 -143.0589 49 'point symmetry operation' ? ? 0.361803 0.587785 -0.723607 -0.262866 0.809017 0.525731 0.894427 0 0.447214 192.82345 -17.90724 -85.10968 50 'point symmetry operation' ? ? 0.670821 -0.162459 -0.723607 0.688191 0.5 0.525732 0.276393 -0.850651 0.447213 302.74186 -177.8523 280.76928 51 'point symmetry operation' ? ? -0.361803 0.587785 0.723607 0.262866 0.809017 -0.525731 -0.894427 0 -0.447214 12.55843 113.06261 583.34946 52 'point symmetry operation' ? ? 0.447213 0.52573 0.723607 0.850651 0 -0.52573 -0.276393 0.850651 -0.447213 -173.52483 168.17575 217.47045 53 'point symmetry operation' ? ? 0.638196 -0.262866 0.723608 0.262866 -0.809017 -0.525731 0.723608 0.525731 -0.447212 -24.64723 516.14723 49.29437 54 'point symmetry operation' ? ? -0.052788 -0.688191 0.723607 -0.688191 -0.5 -0.525732 0.723607 -0.525732 -0.447212 253.44745 676.09229 311.23485 55 'point symmetry operation' ? ? -0.670821 -0.162459 0.723607 -0.688191 0.5 -0.525732 -0.276393 -0.850651 -0.447213 276.44181 426.9723 641.29904 56 'point symmetry operation' ? ? 0.447213 -0.850651 -0.276393 -0.52573 0 -0.850651 0.723607 0.52573 -0.447213 418.47937 592.0042 49.29471 57 'point symmetry operation' ? ? -0.670821 -0.688191 -0.276393 -0.162459 0.5 -0.850651 0.723607 -0.525732 -0.447213 656.53201 376.94599 311.23515 58 'point symmetry operation' ? ? -0.861803 0.425326 -0.276394 0.425326 0.309017 -0.85065 -0.276394 -0.85065 -0.447214 426.71029 278.09451 641.29916 59 'point symmetry operation' ? ? 0.138198 0.951057 -0.276393 0.425326 -0.309017 -0.85065 -0.894427 0.000001 -0.447214 46.62001 432.05914 583.34949 60 'point symmetry operation' ? ? 0.947214 0.162459 -0.276392 -0.162459 -0.5 -0.850651 -0.276392 0.850651 -0.447214 41.53302 626.066 217.47061 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E OE1 GLU 25 U GLU 33 1_555 F CA CA . U CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.129 ? metalc ? metalc2 E OE2 GLU 87 U GLU 95 1_555 F CA CA . U CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc3 E OE1 GLU 87 U GLU 95 1_555 G CA CA . U CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc4 E OE2 GLU 87 U GLU 95 1_555 G CA CA . U CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc5 E OD2 ASP 117 U ASP 125 1_555 F CA CA . U CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.036 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6PPO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 CA U 1 201 2 CA CA . G 6 CA U 1 202 3 CA CA . H 6 CA U 1 203 4 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 6 _atom_site.Cartn_x 323.605 _atom_site.Cartn_y 219.328 _atom_site.Cartn_z 388.495 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 203 _atom_site.auth_asym_id U _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 1 #