data_6PPR # _model_server_result.job_id HK60Lv0zUsA29BZBy9XmFw _model_server_result.datetime_utc '2024-11-26 14:07:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ppr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1101}' # _entry.id 6PPR # _exptl.entry_id 6PPR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog 'DT-DA PAIR' hydrog1 C O4 DT 7 X DT 4 1_555 C N6 DA 49 X DA 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DA MISPAIR' hydrog2 C N4 DC 8 X DC 5 1_555 C N1 DA 49 X DA 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DG MISPAIR' hydrog3 C O2 DT 9 X DT 6 1_555 C N2 DG 48 X DG 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N1 DA 11 X DA 8 1_555 C N3 DT 45 X DT 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C N6 DA 11 X DA 8 1_555 C O4 DT 45 X DT 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C N3 DT 12 X DT 9 1_555 C N1 DA 44 X DA 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C O4 DT 12 X DT 9 1_555 C N6 DA 44 X DA 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog8 C N3 DC 14 X DC 11 1_555 C N1 DG 42 X DG 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog9 C N1 DG 15 X DG 12 1_555 C O2 DC 41 X DC 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog10 C N2 DG 15 X DG 12 1_555 C N3 DC 41 X DC 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N1 DA 16 X DA 13 1_555 C N3 DT 40 X DT 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C N6 DA 16 X DA 13 1_555 C O4 DT 40 X DT 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6PPR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ANP A 1 1101 1 ANP ANP . E 5 SF4 A 1 1102 1101 SF4 SF4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . D 4 162.479 118.509 131.239 1 94.33 ? PG ANP 1101 A 1 HETATM 2 O O1G ANP . . . D 4 161.455 119.584 130.979 1 94.33 ? O1G ANP 1101 A 1 HETATM 3 O O2G ANP . . . D 4 162.789 118.496 132.714 1 94.33 ? O2G ANP 1101 A 1 HETATM 4 O O3G ANP . . . D 4 163.739 118.863 130.49 1 94.33 ? O3G ANP 1101 A 1 HETATM 5 P PB ANP . . . D 4 162.671 115.613 130.908 1 94.33 ? PB ANP 1101 A 1 HETATM 6 O O1B ANP . . . D 4 161.849 114.488 130.342 1 94.33 ? O1B ANP 1101 A 1 HETATM 7 O O2B ANP . . . D 4 164.125 115.697 130.534 1 94.33 ? O2B ANP 1101 A 1 HETATM 8 N N3B ANP . . . D 4 161.914 117.054 130.757 1 94.33 ? N3B ANP 1101 A 1 HETATM 9 P PA ANP . . . D 4 163.856 115.354 133.577 1 94.33 ? PA ANP 1101 A 1 HETATM 10 O O1A ANP . . . D 4 164.05 116.745 134.08 1 94.33 ? O1A ANP 1101 A 1 HETATM 11 O O2A ANP . . . D 4 165.029 114.638 132.995 1 94.33 ? O2A ANP 1101 A 1 HETATM 12 O O3A ANP . . . D 4 162.676 115.365 132.49 1 94.33 ? O3A ANP 1101 A 1 HETATM 13 O O5' ANP . . . D 4 163.204 114.455 134.734 1 94.33 ? O5' ANP 1101 A 1 HETATM 14 C C5' ANP . . . D 4 164.065 113.555 135.474 1 94.33 ? C5' ANP 1101 A 1 HETATM 15 C C4' ANP . . . D 4 163.224 112.499 136.149 1 94.33 ? C4' ANP 1101 A 1 HETATM 16 O O4' ANP . . . D 4 163.967 111.254 136.185 1 94.33 ? O4' ANP 1101 A 1 HETATM 17 C C3' ANP . . . D 4 162.838 112.779 137.607 1 94.33 ? C3' ANP 1101 A 1 HETATM 18 O O3' ANP . . . D 4 161.589 112.185 137.935 1 94.33 ? O3' ANP 1101 A 1 HETATM 19 C C2' ANP . . . D 4 163.991 112.128 138.375 1 94.33 ? C2' ANP 1101 A 1 HETATM 20 O O2' ANP . . . D 4 163.634 111.772 139.693 1 94.33 ? O2' ANP 1101 A 1 HETATM 21 C C1' ANP . . . D 4 164.27 110.898 137.516 1 94.33 ? C1' ANP 1101 A 1 HETATM 22 N N9 ANP . . . D 4 165.661 110.463 137.561 1 94.33 ? N9 ANP 1101 A 1 HETATM 23 C C8 ANP . . . D 4 166.481 110.162 136.502 1 94.33 ? C8 ANP 1101 A 1 HETATM 24 N N7 ANP . . . D 4 167.685 109.801 136.883 1 94.33 ? N7 ANP 1101 A 1 HETATM 25 C C5 ANP . . . D 4 167.651 109.871 138.27 1 94.33 ? C5 ANP 1101 A 1 HETATM 26 C C6 ANP . . . D 4 168.616 109.612 139.262 1 94.33 ? C6 ANP 1101 A 1 HETATM 27 N N6 ANP . . . D 4 169.858 109.213 139.001 1 94.33 ? N6 ANP 1101 A 1 HETATM 28 N N1 ANP . . . D 4 168.242 109.784 140.552 1 94.33 ? N1 ANP 1101 A 1 HETATM 29 C C2 ANP . . . D 4 166.991 110.186 140.81 1 94.33 ? C2 ANP 1101 A 1 HETATM 30 N N3 ANP . . . D 4 166.003 110.459 139.963 1 94.33 ? N3 ANP 1101 A 1 HETATM 31 C C4 ANP . . . D 4 166.405 110.279 138.695 1 94.33 ? C4 ANP 1101 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #