data_6PPZ # _model_server_result.job_id FsyUjca94fIeIe1w1EvIcg _model_server_result.datetime_utc '2024-10-19 06:41:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ppz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6PPZ # _exptl.entry_id 6PPZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PPZ _cell.length_a 57.99 _cell.length_b 75.86 _cell.length_c 77.66 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PPZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -57.99 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 215 A HIS 215 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc2 C MN MN . A MN 402 1_555 D O4 PO4 . A PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6PPZ _atom_sites.fract_transf_matrix[1][1] 0.017244 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN9 A 1 401 350 MN9 MMN . C 3 MN A 1 402 248 MN MN . D 4 PO4 A 1 403 249 PO4 PO4 . E 5 HOH A 1 501 15 HOH HOH . E 5 HOH A 2 502 178 HOH HOH . E 5 HOH A 3 503 37 HOH HOH . E 5 HOH A 4 504 40 HOH HOH . E 5 HOH A 5 505 56 HOH HOH . E 5 HOH A 6 506 8 HOH HOH . E 5 HOH A 7 507 143 HOH HOH . E 5 HOH A 8 508 182 HOH HOH . E 5 HOH A 9 509 60 HOH HOH . E 5 HOH A 10 510 51 HOH HOH . E 5 HOH A 11 511 150 HOH HOH . E 5 HOH A 12 512 179 HOH HOH . E 5 HOH A 13 513 47 HOH HOH . E 5 HOH A 14 514 10 HOH HOH . E 5 HOH A 15 515 13 HOH HOH . E 5 HOH A 16 516 152 HOH HOH . E 5 HOH A 17 517 142 HOH HOH . E 5 HOH A 18 518 192 HOH HOH . E 5 HOH A 19 519 39 HOH HOH . E 5 HOH A 20 520 55 HOH HOH . E 5 HOH A 21 521 71 HOH HOH . E 5 HOH A 22 522 205 HOH HOH . E 5 HOH A 23 523 22 HOH HOH . E 5 HOH A 24 524 99 HOH HOH . E 5 HOH A 25 525 177 HOH HOH . E 5 HOH A 26 526 160 HOH HOH . E 5 HOH A 27 527 229 HOH HOH . E 5 HOH A 28 528 106 HOH HOH . E 5 HOH A 29 529 197 HOH HOH . E 5 HOH A 30 530 140 HOH HOH . E 5 HOH A 31 531 214 HOH HOH . E 5 HOH A 32 532 208 HOH HOH . E 5 HOH A 33 533 110 HOH HOH . E 5 HOH A 34 534 63 HOH HOH . E 5 HOH A 35 535 181 HOH HOH . E 5 HOH A 36 536 207 HOH HOH . E 5 HOH A 37 537 75 HOH HOH . E 5 HOH A 38 538 6 HOH HOH . E 5 HOH A 39 539 19 HOH HOH . E 5 HOH A 40 540 158 HOH HOH . E 5 HOH A 41 541 50 HOH HOH . E 5 HOH A 42 542 170 HOH HOH . E 5 HOH A 43 543 31 HOH HOH . E 5 HOH A 44 544 246 HOH HOH . E 5 HOH A 45 545 146 HOH HOH . E 5 HOH A 46 546 103 HOH HOH . E 5 HOH A 47 547 95 HOH HOH . E 5 HOH A 48 548 32 HOH HOH . E 5 HOH A 49 549 36 HOH HOH . E 5 HOH A 50 550 117 HOH HOH . E 5 HOH A 51 551 17 HOH HOH . E 5 HOH A 52 552 176 HOH HOH . E 5 HOH A 53 553 88 HOH HOH . E 5 HOH A 54 554 98 HOH HOH . E 5 HOH A 55 555 196 HOH HOH . E 5 HOH A 56 556 23 HOH HOH . E 5 HOH A 57 557 217 HOH HOH . E 5 HOH A 58 558 111 HOH HOH . E 5 HOH A 59 559 80 HOH HOH . E 5 HOH A 60 560 67 HOH HOH . E 5 HOH A 61 561 28 HOH HOH . E 5 HOH A 62 562 169 HOH HOH . E 5 HOH A 63 563 108 HOH HOH . E 5 HOH A 64 564 162 HOH HOH . E 5 HOH A 65 565 53 HOH HOH . E 5 HOH A 66 566 138 HOH HOH . E 5 HOH A 67 567 113 HOH HOH . E 5 HOH A 68 568 46 HOH HOH . E 5 HOH A 69 569 163 HOH HOH . E 5 HOH A 70 570 154 HOH HOH . E 5 HOH A 71 571 38 HOH HOH . E 5 HOH A 72 572 225 HOH HOH . E 5 HOH A 73 573 114 HOH HOH . E 5 HOH A 74 574 165 HOH HOH . E 5 HOH A 75 575 135 HOH HOH . E 5 HOH A 76 576 9 HOH HOH . E 5 HOH A 77 577 227 HOH HOH . E 5 HOH A 78 578 76 HOH HOH . E 5 HOH A 79 579 52 HOH HOH . E 5 HOH A 80 580 244 HOH HOH . E 5 HOH A 81 581 156 HOH HOH . E 5 HOH A 82 582 70 HOH HOH . E 5 HOH A 83 583 20 HOH HOH . E 5 HOH A 84 584 7 HOH HOH . E 5 HOH A 85 585 164 HOH HOH . E 5 HOH A 86 586 202 HOH HOH . E 5 HOH A 87 587 193 HOH HOH . E 5 HOH A 88 588 27 HOH HOH . E 5 HOH A 89 589 11 HOH HOH . E 5 HOH A 90 590 89 HOH HOH . E 5 HOH A 91 591 231 HOH HOH . E 5 HOH A 92 592 57 HOH HOH . E 5 HOH A 93 593 79 HOH HOH . E 5 HOH A 94 594 185 HOH HOH . E 5 HOH A 95 595 5 HOH HOH . E 5 HOH A 96 596 78 HOH HOH . E 5 HOH A 97 597 42 HOH HOH . E 5 HOH A 98 598 247 HOH HOH . E 5 HOH A 99 599 21 HOH HOH . E 5 HOH A 100 600 65 HOH HOH . E 5 HOH A 101 601 105 HOH HOH . E 5 HOH A 102 602 29 HOH HOH . E 5 HOH A 103 603 131 HOH HOH . E 5 HOH A 104 604 44 HOH HOH . E 5 HOH A 105 605 25 HOH HOH . E 5 HOH A 106 606 24 HOH HOH . E 5 HOH A 107 607 209 HOH HOH . E 5 HOH A 108 608 102 HOH HOH . E 5 HOH A 109 609 109 HOH HOH . E 5 HOH A 110 610 222 HOH HOH . E 5 HOH A 111 611 85 HOH HOH . E 5 HOH A 112 612 148 HOH HOH . E 5 HOH A 113 613 101 HOH HOH . E 5 HOH A 114 614 226 HOH HOH . E 5 HOH A 115 615 132 HOH HOH . E 5 HOH A 116 616 16 HOH HOH . E 5 HOH A 117 617 157 HOH HOH . E 5 HOH A 118 618 45 HOH HOH . E 5 HOH A 119 619 137 HOH HOH . E 5 HOH A 120 620 144 HOH HOH . E 5 HOH A 121 621 72 HOH HOH . E 5 HOH A 122 622 49 HOH HOH . E 5 HOH A 123 623 161 HOH HOH . E 5 HOH A 124 624 3 HOH HOH . E 5 HOH A 125 625 33 HOH HOH . E 5 HOH A 126 626 141 HOH HOH . E 5 HOH A 127 627 128 HOH HOH . E 5 HOH A 128 628 54 HOH HOH . E 5 HOH A 129 629 126 HOH HOH . E 5 HOH A 130 630 82 HOH HOH . E 5 HOH A 131 631 115 HOH HOH . E 5 HOH A 132 632 41 HOH HOH . E 5 HOH A 133 633 218 HOH HOH . E 5 HOH A 134 634 136 HOH HOH . E 5 HOH A 135 635 245 HOH HOH . E 5 HOH A 136 636 145 HOH HOH . E 5 HOH A 137 637 243 HOH HOH . E 5 HOH A 138 638 213 HOH HOH . E 5 HOH A 139 639 64 HOH HOH . E 5 HOH A 140 640 73 HOH HOH . E 5 HOH A 141 641 116 HOH HOH . E 5 HOH A 142 642 223 HOH HOH . E 5 HOH A 143 643 187 HOH HOH . E 5 HOH A 144 644 189 HOH HOH . E 5 HOH A 145 645 206 HOH HOH . E 5 HOH A 146 646 127 HOH HOH . E 5 HOH A 147 647 121 HOH HOH . E 5 HOH A 148 648 58 HOH HOH . E 5 HOH A 149 649 69 HOH HOH . E 5 HOH A 150 650 122 HOH HOH . E 5 HOH A 151 651 35 HOH HOH . E 5 HOH A 152 652 112 HOH HOH . E 5 HOH A 153 653 147 HOH HOH . E 5 HOH A 154 654 241 HOH HOH . E 5 HOH A 155 655 125 HOH HOH . E 5 HOH A 156 656 30 HOH HOH . E 5 HOH A 157 657 167 HOH HOH . E 5 HOH A 158 658 97 HOH HOH . E 5 HOH A 159 659 184 HOH HOH . E 5 HOH A 160 660 199 HOH HOH . E 5 HOH A 161 661 242 HOH HOH . E 5 HOH A 162 662 59 HOH HOH . E 5 HOH A 163 663 235 HOH HOH . E 5 HOH A 164 664 155 HOH HOH . E 5 HOH A 165 665 194 HOH HOH . E 5 HOH A 166 666 4 HOH HOH . E 5 HOH A 167 667 149 HOH HOH . E 5 HOH A 168 668 238 HOH HOH . E 5 HOH A 169 669 151 HOH HOH . E 5 HOH A 170 670 93 HOH HOH . E 5 HOH A 171 671 188 HOH HOH . E 5 HOH A 172 672 239 HOH HOH . E 5 HOH A 173 673 201 HOH HOH . E 5 HOH A 174 674 153 HOH HOH . E 5 HOH A 175 675 173 HOH HOH . E 5 HOH A 176 676 12 HOH HOH . E 5 HOH A 177 677 230 HOH HOH . E 5 HOH A 178 678 191 HOH HOH . E 5 HOH A 179 679 124 HOH HOH . E 5 HOH A 180 680 221 HOH HOH . E 5 HOH A 181 681 219 HOH HOH . E 5 HOH A 182 682 118 HOH HOH . E 5 HOH A 183 683 195 HOH HOH . E 5 HOH A 184 684 119 HOH HOH . E 5 HOH A 185 685 198 HOH HOH . E 5 HOH A 186 686 134 HOH HOH . E 5 HOH A 187 687 183 HOH HOH . E 5 HOH A 188 688 233 HOH HOH . E 5 HOH A 189 689 212 HOH HOH . E 5 HOH A 190 690 232 HOH HOH . E 5 HOH A 191 691 220 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -20.927 _atom_site.Cartn_y 18.772 _atom_site.Cartn_z -12.63 _atom_site.occupancy 0.93 _atom_site.B_iso_or_equiv 52.13 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #