data_6PQ4 # _model_server_result.job_id fyipK_kd302Z9JZM8BrDGQ _model_server_result.datetime_utc '2024-11-05 04:41:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pq4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 6PQ4 # _exptl.entry_id 6PQ4 _exptl.method 'ELECTRON CRYSTALLOGRAPHY' # _entity.details ? _entity.formula_weight 62.005 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PQ4 _cell.length_a 67.561 _cell.length_b 67.561 _cell.length_c 106.802 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PQ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 34 A CYS 139 1_555 A SG CYS 123 A CYS 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 178 A CYS 283 1_555 A SG CYS 249 A CYS 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A O THR 16 A THR 121 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc2 A O PRO 175 A PRO 280 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc3 A O VAL 177 A VAL 282 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc4 A OD1 ASP 200 A ASP 305 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc5 A OD2 ASP 200 A ASP 305 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc6 A OD1 ASP 260 A ASP 365 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc7 A OD2 ASP 260 A ASP 365 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc8 B CA CA . A CA 401 1_555 E O HOH . A HOH 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc9 B CA CA . A CA 401 1_555 E O HOH . A HOH 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 237 n n N O2 NO3 sing 238 n n N O3 NO3 sing 239 n n # _atom_sites.entry_id 6PQ4 _atom_sites.fract_transf_matrix[1][1] 0.014801 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014801 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009363 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 1 CA CA . C 2 CA A 1 402 2 CA CA . D 3 NO3 A 1 403 1 NO3 NO3 . E 4 HOH A 1 501 54 HOH HOH . E 4 HOH A 2 502 86 HOH HOH . E 4 HOH A 3 503 50 HOH HOH . E 4 HOH A 4 504 5 HOH HOH . E 4 HOH A 5 505 74 HOH HOH . E 4 HOH A 6 506 64 HOH HOH . E 4 HOH A 7 507 49 HOH HOH . E 4 HOH A 8 508 28 HOH HOH . E 4 HOH A 9 509 6 HOH HOH . E 4 HOH A 10 510 31 HOH HOH . E 4 HOH A 11 511 40 HOH HOH . E 4 HOH A 12 512 73 HOH HOH . E 4 HOH A 13 513 9 HOH HOH . E 4 HOH A 14 514 55 HOH HOH . E 4 HOH A 15 515 13 HOH HOH . E 4 HOH A 16 516 67 HOH HOH . E 4 HOH A 17 517 14 HOH HOH . E 4 HOH A 18 518 17 HOH HOH . E 4 HOH A 19 519 24 HOH HOH . E 4 HOH A 20 520 53 HOH HOH . E 4 HOH A 21 521 65 HOH HOH . E 4 HOH A 22 522 21 HOH HOH . E 4 HOH A 23 523 83 HOH HOH . E 4 HOH A 24 524 51 HOH HOH . E 4 HOH A 25 525 45 HOH HOH . E 4 HOH A 26 526 10 HOH HOH . E 4 HOH A 27 527 4 HOH HOH . E 4 HOH A 28 528 81 HOH HOH . E 4 HOH A 29 529 2 HOH HOH . E 4 HOH A 30 530 3 HOH HOH . E 4 HOH A 31 531 71 HOH HOH . E 4 HOH A 32 532 43 HOH HOH . E 4 HOH A 33 533 23 HOH HOH . E 4 HOH A 34 534 8 HOH HOH . E 4 HOH A 35 535 15 HOH HOH . E 4 HOH A 36 536 61 HOH HOH . E 4 HOH A 37 537 32 HOH HOH . E 4 HOH A 38 538 30 HOH HOH . E 4 HOH A 39 539 66 HOH HOH . E 4 HOH A 40 540 56 HOH HOH . E 4 HOH A 41 541 90 HOH HOH . E 4 HOH A 42 542 22 HOH HOH . E 4 HOH A 43 543 36 HOH HOH . E 4 HOH A 44 544 75 HOH HOH . E 4 HOH A 45 545 38 HOH HOH . E 4 HOH A 46 546 1 HOH HOH . E 4 HOH A 47 547 69 HOH HOH . E 4 HOH A 48 548 7 HOH HOH . E 4 HOH A 49 549 57 HOH HOH . E 4 HOH A 50 550 87 HOH HOH . E 4 HOH A 51 551 29 HOH HOH . E 4 HOH A 52 552 26 HOH HOH . E 4 HOH A 53 553 18 HOH HOH . E 4 HOH A 54 554 37 HOH HOH . E 4 HOH A 55 555 33 HOH HOH . E 4 HOH A 56 556 62 HOH HOH . E 4 HOH A 57 557 48 HOH HOH . E 4 HOH A 58 558 41 HOH HOH . E 4 HOH A 59 559 35 HOH HOH . E 4 HOH A 60 560 47 HOH HOH . E 4 HOH A 61 561 25 HOH HOH . E 4 HOH A 62 562 12 HOH HOH . E 4 HOH A 63 563 92 HOH HOH . E 4 HOH A 64 564 46 HOH HOH . E 4 HOH A 65 565 78 HOH HOH . E 4 HOH A 66 566 68 HOH HOH . E 4 HOH A 67 567 91 HOH HOH . E 4 HOH A 68 568 63 HOH HOH . E 4 HOH A 69 569 16 HOH HOH . E 4 HOH A 70 570 79 HOH HOH . E 4 HOH A 71 571 72 HOH HOH . E 4 HOH A 72 572 52 HOH HOH . E 4 HOH A 73 573 34 HOH HOH . E 4 HOH A 74 574 76 HOH HOH . E 4 HOH A 75 575 82 HOH HOH . E 4 HOH A 76 576 58 HOH HOH . E 4 HOH A 77 577 84 HOH HOH . E 4 HOH A 78 578 39 HOH HOH . E 4 HOH A 79 579 85 HOH HOH . E 4 HOH A 80 580 77 HOH HOH . E 4 HOH A 81 581 93 HOH HOH . E 4 HOH A 82 582 59 HOH HOH . E 4 HOH A 83 583 19 HOH HOH . E 4 HOH A 84 584 27 HOH HOH . E 4 HOH A 85 585 44 HOH HOH . E 4 HOH A 86 586 20 HOH HOH . E 4 HOH A 87 587 60 HOH HOH . E 4 HOH A 88 588 94 HOH HOH . E 4 HOH A 89 589 97 HOH HOH . E 4 HOH A 90 590 89 HOH HOH . E 4 HOH A 91 591 70 HOH HOH . E 4 HOH A 92 592 96 HOH HOH . E 4 HOH A 93 593 80 HOH HOH . E 4 HOH A 94 594 95 HOH HOH . E 4 HOH A 95 595 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . . . D 3 36.901 -5.629 15.371 1 30.5 ? N NO3 403 A 1 HETATM 2 O O1 NO3 . . . D 3 38.113 -5.447 15.056 1 30.49 ? O1 NO3 403 A 1 HETATM 3 O O2 NO3 . . . D 3 36.12 -4.639 15.477 1 30.69 ? O2 NO3 403 A 1 HETATM 4 O O3 NO3 . . . D 3 36.468 -6.8 15.582 1 30.3 ? O3 NO3 403 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #