data_6PQ5 # _model_server_result.job_id CNqpLRdtXZhJBW8xwmm9HA _model_server_result.datetime_utc '2024-11-04 20:09:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pq5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":102}' # _entry.id 6PQ5 # _exptl.entry_id 6PQ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 120.54 _cell.angle_gamma 90 _cell.entry_id 6PQ5 _cell.length_a 18.533 _cell.length_b 9.508 _cell.length_c 17.632 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PQ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 1 2 A,C,D 1 3 A,C,D 1 4 B 1 5 B 1 6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_565 x,y+1,z 1 0 0 0 1 0 0 0 1 0 9.508 0 3 'crystal symmetry operation' 2_556 -x,y+1/2,-z+1 -1 0 0 0 1 0 0 0 -1 -8.95952 4.754 15.185994 4 'crystal symmetry operation' 2_566 -x,y+3/2,-z+1 -1 0 0 0 1 0 0 0 -1 -8.95952 14.262 15.185994 5 'crystal symmetry operation' 2_555 -x,y+1/2,-z -1 0 0 0 1 0 0 0 -1 0 4.754 0 6 'crystal symmetry operation' 2_565 -x,y+3/2,-z -1 0 0 0 1 0 0 0 -1 0 14.262 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 22 n n C1 C3 MLI sing 23 n n C1 H11 MLI sing 24 n n C1 H12 MLI sing 25 n n C2 O6 MLI doub 26 n n C2 O7 MLI sing 27 n n C3 O8 MLI doub 28 n n C3 O9 MLI sing 29 n n # _atom_sites.entry_id 6PQ5 _atom_sites.fract_transf_matrix[1][1] 0.053958 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.031833 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.105175 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.065849 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MLI A 1 101 1 MLI MLI . D 2 MLI A 1 102 2 MLI MLI . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . D 2 0.328 -1.16 14.391 1 29.35 ? C1 MLI 102 A 1 HETATM 2 C C2 MLI . . . D 2 0.26 -0.379 13.097 1 29.7 ? C2 MLI 102 A 1 HETATM 3 C C3 MLI . . . D 2 -0.33 -0.482 15.574 1 28.89 ? C3 MLI 102 A 1 HETATM 4 O O6 MLI . . . D 2 0.181 -1.048 12.045 1 30.23 ? O6 MLI 102 A 1 HETATM 5 O O7 MLI . . . D 2 0.302 0.873 13.11 1 30.67 -1 O7 MLI 102 A 1 HETATM 6 O O8 MLI . . . D 2 -0.709 0.707 15.49 1 28.67 -1 O8 MLI 102 A 1 HETATM 7 O O9 MLI . . . D 2 -0.465 -1.16 16.619 1 28 ? O9 MLI 102 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #