data_6PQO
#
_model_server_result.job_id            2Qobe_IJdq48WBfFIjyGxA 
_model_server_result.datetime_utc      '2024-12-21 16:32:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pqo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":1205}' 
#
_entry.id    6PQO 
#
_exptl.entry_id    6PQO 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PQO 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PQO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 K N N 
? 4 S N N 
? 4 T N N 
? 4 Y N N 
? 4 Z N N 
? 4 GA N N 
? 4 HA N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n E NAG 1 E 1 NAG D 1301 NAG 
2 n E NAG 2 E 2 NAG D 1302 NAG 
2 n F NAG 1 F 1 NAG A 1301 NAG 
2 n F NAG 2 F 2 NAG A 1302 NAG 
2 n G NAG 1 G 1 NAG B 1301 NAG 
2 n G NAG 2 G 2 NAG B 1302 NAG 
2 n H NAG 1 H 1 NAG C 1301 NAG 
2 n H NAG 2 H 2 NAG C 1302 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 622 D CYS 621 1_555 I C22 JT0 . D JT0 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? 
covale ? covale2 B SG CYS 622 A CYS 621 1_555 R C22 JT0 . A JT0 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? 
covale ? covale3 C SG CYS 622 B CYS 621 1_555 X C22 JT0 . B JT0 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? 
covale ? covale4 D SG CYS 622 C CYS 621 1_555 FA C22 JT0 . C JT0 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? 
covale ? covale5 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale6 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale7 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale8 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                LBN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(2R)-2-[(9Z)-9-Octadecenoyloxy]-3-(palmitoyloxy)propyl 2-(trimethylammonio)ethyl phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C12 N1 LBN sing 338 n n 
O3 P1 LBN sing 339 n n 
O2 C9 LBN sing 340 n n 
O2 P1 LBN sing 341 n n 
C9 C6 LBN sing 342 n n 
O4 P1 LBN doub 343 n n 
P1 O1 LBN sing 344 n n 
C6 N1 LBN sing 345 n n 
N1 C15 LBN sing 346 n n 
N1 C18 LBN sing 347 n n 
O1 C1 LBN sing 348 n n 
C2 C1 LBN sing 349 n n 
C2 C3 LBN sing 350 n n 
C2 O7 LBN sing 351 n n 
C3 O5 LBN sing 352 n n 
O6 C25 LBN doub 353 n n 
O5 C25 LBN sing 354 n n 
O7 C34 LBN sing 355 n n 
C25 C26 LBN sing 356 n n 
C34 C35 LBN sing 357 n n 
C34 O8 LBN doub 358 n n 
C26 C27 LBN sing 359 n n 
C35 C36 LBN sing 360 n n 
C27 C28 LBN sing 361 n n 
C36 C37 LBN sing 362 n n 
C28 C29 LBN sing 363 n n 
C37 C38 LBN sing 364 n n 
C29 C30 LBN sing 365 n n 
C39 C38 LBN sing 366 n n 
C39 C40 LBN sing 367 n n 
C41 C40 LBN sing 368 n n 
C41 C42 LBN sing 369 n n 
C30 C31 LBN sing 370 n n 
C42 C5 LBN doub 371 z n 
C31 C32 LBN sing 372 n n 
C5 C8 LBN sing 373 n n 
C8 C11 LBN sing 374 n n 
C32 C33 LBN sing 375 n n 
C11 C14 LBN sing 376 n n 
C33 C4 LBN sing 377 n n 
C14 C17 LBN sing 378 n n 
C4 C7 LBN sing 379 n n 
C17 C20 LBN sing 380 n n 
C7 C10 LBN sing 381 n n 
C20 C22 LBN sing 382 n n 
C10 C13 LBN sing 383 n n 
C22 C23 LBN sing 384 n n 
C13 C16 LBN sing 385 n n 
C23 C24 LBN sing 386 n n 
C16 C19 LBN sing 387 n n 
C19 C21 LBN sing 388 n n 
C1 H1 LBN sing 389 n n 
C1 H2 LBN sing 390 n n 
C2 H3 LBN sing 391 n n 
C3 H4 LBN sing 392 n n 
C3 H5 LBN sing 393 n n 
C4 H6 LBN sing 394 n n 
C4 H7 LBN sing 395 n n 
C5 H8 LBN sing 396 n n 
C6 H9 LBN sing 397 n n 
C6 H10 LBN sing 398 n n 
C7 H11 LBN sing 399 n n 
C7 H12 LBN sing 400 n n 
C8 H13 LBN sing 401 n n 
C8 H14 LBN sing 402 n n 
C9 H15 LBN sing 403 n n 
C9 H16 LBN sing 404 n n 
C10 H17 LBN sing 405 n n 
C10 H18 LBN sing 406 n n 
C11 H19 LBN sing 407 n n 
C12 H20 LBN sing 408 n n 
C12 H21 LBN sing 409 n n 
C12 H22 LBN sing 410 n n 
C13 H23 LBN sing 411 n n 
C13 H24 LBN sing 412 n n 
C14 H25 LBN sing 413 n n 
C15 H26 LBN sing 414 n n 
C15 H27 LBN sing 415 n n 
C15 H28 LBN sing 416 n n 
C16 H30 LBN sing 417 n n 
C16 H31 LBN sing 418 n n 
C17 H32 LBN sing 419 n n 
C17 H33 LBN sing 420 n n 
C18 H34 LBN sing 421 n n 
C18 H35 LBN sing 422 n n 
C18 H36 LBN sing 423 n n 
C19 H37 LBN sing 424 n n 
C19 H38 LBN sing 425 n n 
C20 H39 LBN sing 426 n n 
C20 H40 LBN sing 427 n n 
C21 H41 LBN sing 428 n n 
C21 H42 LBN sing 429 n n 
C21 H43 LBN sing 430 n n 
C22 H44 LBN sing 431 n n 
C22 H45 LBN sing 432 n n 
C23 H46 LBN sing 433 n n 
C23 H47 LBN sing 434 n n 
C24 H48 LBN sing 435 n n 
C24 H49 LBN sing 436 n n 
C24 H50 LBN sing 437 n n 
C26 H51 LBN sing 438 n n 
C26 H52 LBN sing 439 n n 
C27 H53 LBN sing 440 n n 
C27 H54 LBN sing 441 n n 
C28 H55 LBN sing 442 n n 
C28 H56 LBN sing 443 n n 
C29 H57 LBN sing 444 n n 
C29 H58 LBN sing 445 n n 
C30 H59 LBN sing 446 n n 
C30 H60 LBN sing 447 n n 
C31 H61 LBN sing 448 n n 
C31 H62 LBN sing 449 n n 
C32 H63 LBN sing 450 n n 
C32 H64 LBN sing 451 n n 
C33 H65 LBN sing 452 n n 
C33 H66 LBN sing 453 n n 
C35 H67 LBN sing 454 n n 
C35 H68 LBN sing 455 n n 
C36 H69 LBN sing 456 n n 
C36 H70 LBN sing 457 n n 
C37 H71 LBN sing 458 n n 
C37 H72 LBN sing 459 n n 
C38 H73 LBN sing 460 n n 
C38 H74 LBN sing 461 n n 
C39 H75 LBN sing 462 n n 
C40 H76 LBN sing 463 n n 
C41 H77 LBN sing 464 n n 
C41 H78 LBN sing 465 n n 
C42 H79 LBN sing 466 n n 
C11 H80 LBN sing 467 n n 
C14 H81 LBN sing 468 n n 
C39 H82 LBN sing 469 n n 
C40 H83 LBN sing 470 n n 
#
_atom_sites.entry_id                     6PQO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 JT0 D 1 1303 1303 JT0 JT0 . 
J 4 LBN D 1 1304 1304 LBN LBN . 
K 4 LBN D 1 1305 1305 LBN LBN . 
L 5 6OU D 1 1306 1306 6OU 6OU . 
M 5 6OU D 1 1307 1307 6OU 6OU . 
N 5 6OU D 1 1308 1306 6OU 6OU . 
O 5 6OU D 1 1309 1310 6OU 6OU . 
P 5 6OU D 1 1310 1308 6OU 6OU . 
Q 5 6OU A 1 1201 1308 6OU 6OU . 
R 3 JT0 A 1 1204 1303 JT0 JT0 . 
S 4 LBN A 1 1205 1304 LBN LBN . 
T 4 LBN A 1 1206 1305 LBN LBN . 
U 5 6OU A 1 1207 1307 6OU 6OU . 
V 5 6OU A 1 1208 1310 6OU 6OU . 
W 5 6OU B 1 1201 1308 6OU 6OU . 
X 3 JT0 B 1 1204 1303 JT0 JT0 . 
Y 4 LBN B 1 1205 1304 LBN LBN . 
Z 4 LBN B 1 1206 1305 LBN LBN . 
AA 5 6OU B 1 1207 1306 6OU 6OU . 
BA 5 6OU B 1 1208 1307 6OU 6OU . 
CA 5 6OU B 1 1209 1310 6OU 6OU . 
DA 5 6OU C 1 1201 1310 6OU 6OU . 
EA 5 6OU C 1 1202 1308 6OU 6OU . 
FA 3 JT0 C 1 1205 1303 JT0 JT0 . 
GA 4 LBN C 1 1206 1304 LBN LBN . 
HA 4 LBN C 1 1207 1305 LBN LBN . 
IA 5 6OU C 1 1208 1306 6OU 6OU . 
JA 5 6OU C 1 1209 1307 6OU 6OU . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LBN . . . S 4 137.761 -107.707 180.014 1 150.1 ? C1 LBN 1205 A 1 
HETATM 2 N N1 LBN . . . S 4 136.575 -106.328 173.23 1 150.1 ? N1 LBN 1205 A 1 
HETATM 3 P P1 LBN . . . S 4 136.507 -108.163 177.668 1 150.1 ? P1 LBN 1205 A 1 
HETATM 4 C C2 LBN . . . S 4 136.92 -107.377 181.289 1 150.1 ? C2 LBN 1205 A 1 
HETATM 5 C C3 LBN . . . S 4 137.368 -108.31 182.449 1 150.1 ? C3 LBN 1205 A 1 
HETATM 6 C C6 LBN . . . S 4 137.06 -105.644 174.558 1 150.1 ? C6 LBN 1205 A 1 
HETATM 7 O O1 LBN . . . S 4 137.091 -107.207 178.91 1 150.1 ? O1 LBN 1205 A 1 
HETATM 8 C C9 LBN . . . S 4 136.373 -106.184 175.862 1 150.1 ? C9 LBN 1205 A 1 
HETATM 9 O O2 LBN . . . S 4 136.943 -107.375 176.144 1 150.1 ? O2 LBN 1205 A 1 
HETATM 10 C C12 LBN . . . S 4 136.589 -105.326 172.104 1 150.1 ? C12 LBN 1205 A 1 
HETATM 11 O O3 LBN . . . S 4 135.029 -108.005 177.588 1 150.1 ? O3 LBN 1205 A 1 
HETATM 12 C C15 LBN . . . S 4 137.484 -107.489 172.865 1 150.1 ? C15 LBN 1205 A 1 
HETATM 13 O O4 LBN . . . S 4 137.311 -109.402 177.589 1 150.1 ? O4 LBN 1205 A 1 
HETATM 14 C C18 LBN . . . S 4 135.145 -106.856 173.347 1 150.1 ? C18 LBN 1205 A 1 
HETATM 15 C C25 LBN . . . S 4 136.328 -109.13 184.454 1 150.1 ? C25 LBN 1205 A 1 
HETATM 16 O O5 LBN . . . S 4 136.516 -108.111 183.569 1 150.1 ? O5 LBN 1205 A 1 
HETATM 17 C C26 LBN . . . S 4 135.122 -108.971 185.36 1 150.1 ? C26 LBN 1205 A 1 
HETATM 18 O O6 LBN . . . S 4 137.093 -110.075 184.49 1 150.1 ? O6 LBN 1205 A 1 
HETATM 19 C C27 LBN . . . S 4 135.449 -108.467 186.778 1 150.1 ? C27 LBN 1205 A 1 
HETATM 20 C C28 LBN . . . S 4 134.299 -107.701 187.485 1 150.1 ? C28 LBN 1205 A 1 
HETATM 21 C C29 LBN . . . S 4 134.262 -107.763 189.037 1 150.1 ? C29 LBN 1205 A 1 
HETATM 22 C C30 LBN . . . S 4 133.522 -106.596 189.744 1 150.1 ? C30 LBN 1205 A 1 
HETATM 23 C C31 LBN . . . S 4 132.969 -106.866 191.176 1 150.1 ? C31 LBN 1205 A 1 
HETATM 24 C C32 LBN . . . S 4 133.466 -105.945 192.315 1 150.1 ? C32 LBN 1205 A 1 
HETATM 25 C C33 LBN . . . S 4 132.749 -106.11 193.684 1 150.1 ? C33 LBN 1205 A 1 
HETATM 26 C C34 LBN . . . S 4 136.464 -104.976 181.397 1 150.1 ? C34 LBN 1205 A 1 
HETATM 27 O O7 LBN . . . S 4 137.237 -106.056 181.737 1 150.1 ? O7 LBN 1205 A 1 
HETATM 28 C C35 LBN . . . S 4 136.541 -103.828 182.395 1 150.1 ? C35 LBN 1205 A 1 
HETATM 29 O O8 LBN . . . S 4 135.804 -105.006 180.381 1 150.1 ? O8 LBN 1205 A 1 
HETATM 30 C C36 LBN . . . S 4 135.468 -103.837 183.516 1 150.1 ? C36 LBN 1205 A 1 
HETATM 31 C C37 LBN . . . S 4 135.99 -104.004 184.965 1 150.1 ? C37 LBN 1205 A 1 
HETATM 32 C C38 LBN . . . S 4 135.118 -103.387 186.085 1 150.1 ? C38 LBN 1205 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           32 
#