data_6PQO # _model_server_result.job_id SmljJqlUPcYYAD32F4sD7w _model_server_result.datetime_utc '2024-12-30 17:47:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pqo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":1205}' # _entry.id 6PQO # _exptl.entry_id 6PQO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PQO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PQO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 S N N ? 4 T N N ? 4 Y N N ? 4 Z N N ? 4 GA N N ? 4 HA N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E NAG 1 E 1 NAG D 1301 NAG 2 n E NAG 2 E 2 NAG D 1302 NAG 2 n F NAG 1 F 1 NAG A 1301 NAG 2 n F NAG 2 F 2 NAG A 1302 NAG 2 n G NAG 1 G 1 NAG B 1301 NAG 2 n G NAG 2 G 2 NAG B 1302 NAG 2 n H NAG 1 H 1 NAG C 1301 NAG 2 n H NAG 2 H 2 NAG C 1302 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 622 D CYS 621 1_555 I C22 JT0 . D JT0 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale2 B SG CYS 622 A CYS 621 1_555 R C22 JT0 . A JT0 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? covale ? covale3 C SG CYS 622 B CYS 621 1_555 X C22 JT0 . B JT0 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale4 D SG CYS 622 C CYS 621 1_555 FA C22 JT0 . C JT0 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale5 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale8 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id LBN _chem_comp.mon_nstd_flag . _chem_comp.name 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-[(9Z)-9-Octadecenoyloxy]-3-(palmitoyloxy)propyl 2-(trimethylammonio)ethyl phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 N1 LBN sing 338 n n O3 P1 LBN sing 339 n n O2 C9 LBN sing 340 n n O2 P1 LBN sing 341 n n C9 C6 LBN sing 342 n n O4 P1 LBN doub 343 n n P1 O1 LBN sing 344 n n C6 N1 LBN sing 345 n n N1 C15 LBN sing 346 n n N1 C18 LBN sing 347 n n O1 C1 LBN sing 348 n n C2 C1 LBN sing 349 n n C2 C3 LBN sing 350 n n C2 O7 LBN sing 351 n n C3 O5 LBN sing 352 n n O6 C25 LBN doub 353 n n O5 C25 LBN sing 354 n n O7 C34 LBN sing 355 n n C25 C26 LBN sing 356 n n C34 C35 LBN sing 357 n n C34 O8 LBN doub 358 n n C26 C27 LBN sing 359 n n C35 C36 LBN sing 360 n n C27 C28 LBN sing 361 n n C36 C37 LBN sing 362 n n C28 C29 LBN sing 363 n n C37 C38 LBN sing 364 n n C29 C30 LBN sing 365 n n C39 C38 LBN sing 366 n n C39 C40 LBN sing 367 n n C41 C40 LBN sing 368 n n C41 C42 LBN sing 369 n n C30 C31 LBN sing 370 n n C42 C5 LBN doub 371 z n C31 C32 LBN sing 372 n n C5 C8 LBN sing 373 n n C8 C11 LBN sing 374 n n C32 C33 LBN sing 375 n n C11 C14 LBN sing 376 n n C33 C4 LBN sing 377 n n C14 C17 LBN sing 378 n n C4 C7 LBN sing 379 n n C17 C20 LBN sing 380 n n C7 C10 LBN sing 381 n n C20 C22 LBN sing 382 n n C10 C13 LBN sing 383 n n C22 C23 LBN sing 384 n n C13 C16 LBN sing 385 n n C23 C24 LBN sing 386 n n C16 C19 LBN sing 387 n n C19 C21 LBN sing 388 n n C1 H1 LBN sing 389 n n C1 H2 LBN sing 390 n n C2 H3 LBN sing 391 n n C3 H4 LBN sing 392 n n C3 H5 LBN sing 393 n n C4 H6 LBN sing 394 n n C4 H7 LBN sing 395 n n C5 H8 LBN sing 396 n n C6 H9 LBN sing 397 n n C6 H10 LBN sing 398 n n C7 H11 LBN sing 399 n n C7 H12 LBN sing 400 n n C8 H13 LBN sing 401 n n C8 H14 LBN sing 402 n n C9 H15 LBN sing 403 n n C9 H16 LBN sing 404 n n C10 H17 LBN sing 405 n n C10 H18 LBN sing 406 n n C11 H19 LBN sing 407 n n C12 H20 LBN sing 408 n n C12 H21 LBN sing 409 n n C12 H22 LBN sing 410 n n C13 H23 LBN sing 411 n n C13 H24 LBN sing 412 n n C14 H25 LBN sing 413 n n C15 H26 LBN sing 414 n n C15 H27 LBN sing 415 n n C15 H28 LBN sing 416 n n C16 H30 LBN sing 417 n n C16 H31 LBN sing 418 n n C17 H32 LBN sing 419 n n C17 H33 LBN sing 420 n n C18 H34 LBN sing 421 n n C18 H35 LBN sing 422 n n C18 H36 LBN sing 423 n n C19 H37 LBN sing 424 n n C19 H38 LBN sing 425 n n C20 H39 LBN sing 426 n n C20 H40 LBN sing 427 n n C21 H41 LBN sing 428 n n C21 H42 LBN sing 429 n n C21 H43 LBN sing 430 n n C22 H44 LBN sing 431 n n C22 H45 LBN sing 432 n n C23 H46 LBN sing 433 n n C23 H47 LBN sing 434 n n C24 H48 LBN sing 435 n n C24 H49 LBN sing 436 n n C24 H50 LBN sing 437 n n C26 H51 LBN sing 438 n n C26 H52 LBN sing 439 n n C27 H53 LBN sing 440 n n C27 H54 LBN sing 441 n n C28 H55 LBN sing 442 n n C28 H56 LBN sing 443 n n C29 H57 LBN sing 444 n n C29 H58 LBN sing 445 n n C30 H59 LBN sing 446 n n C30 H60 LBN sing 447 n n C31 H61 LBN sing 448 n n C31 H62 LBN sing 449 n n C32 H63 LBN sing 450 n n C32 H64 LBN sing 451 n n C33 H65 LBN sing 452 n n C33 H66 LBN sing 453 n n C35 H67 LBN sing 454 n n C35 H68 LBN sing 455 n n C36 H69 LBN sing 456 n n C36 H70 LBN sing 457 n n C37 H71 LBN sing 458 n n C37 H72 LBN sing 459 n n C38 H73 LBN sing 460 n n C38 H74 LBN sing 461 n n C39 H75 LBN sing 462 n n C40 H76 LBN sing 463 n n C41 H77 LBN sing 464 n n C41 H78 LBN sing 465 n n C42 H79 LBN sing 466 n n C11 H80 LBN sing 467 n n C14 H81 LBN sing 468 n n C39 H82 LBN sing 469 n n C40 H83 LBN sing 470 n n # _atom_sites.entry_id 6PQO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 JT0 D 1 1303 1303 JT0 JT0 . J 4 LBN D 1 1304 1304 LBN LBN . K 4 LBN D 1 1305 1305 LBN LBN . L 5 6OU D 1 1306 1306 6OU 6OU . M 5 6OU D 1 1307 1307 6OU 6OU . N 5 6OU D 1 1308 1306 6OU 6OU . O 5 6OU D 1 1309 1310 6OU 6OU . P 5 6OU D 1 1310 1308 6OU 6OU . Q 5 6OU A 1 1201 1308 6OU 6OU . R 3 JT0 A 1 1204 1303 JT0 JT0 . S 4 LBN A 1 1205 1304 LBN LBN . T 4 LBN A 1 1206 1305 LBN LBN . U 5 6OU A 1 1207 1307 6OU 6OU . V 5 6OU A 1 1208 1310 6OU 6OU . W 5 6OU B 1 1201 1308 6OU 6OU . X 3 JT0 B 1 1204 1303 JT0 JT0 . Y 4 LBN B 1 1205 1304 LBN LBN . Z 4 LBN B 1 1206 1305 LBN LBN . AA 5 6OU B 1 1207 1306 6OU 6OU . BA 5 6OU B 1 1208 1307 6OU 6OU . CA 5 6OU B 1 1209 1310 6OU 6OU . DA 5 6OU C 1 1201 1310 6OU 6OU . EA 5 6OU C 1 1202 1308 6OU 6OU . FA 3 JT0 C 1 1205 1303 JT0 JT0 . GA 4 LBN C 1 1206 1304 LBN LBN . HA 4 LBN C 1 1207 1305 LBN LBN . IA 5 6OU C 1 1208 1306 6OU 6OU . JA 5 6OU C 1 1209 1307 6OU 6OU . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LBN . . . Y 4 168.706 -137.759 179.997 1 150.1 ? C1 LBN 1205 B 1 HETATM 2 N N1 LBN . . . Y 4 170.103 -136.583 173.214 1 150.1 ? N1 LBN 1205 B 1 HETATM 3 P P1 LBN . . . Y 4 168.262 -136.503 177.65 1 150.1 ? P1 LBN 1205 B 1 HETATM 4 C C2 LBN . . . Y 4 169.04 -136.919 181.272 1 150.1 ? C2 LBN 1205 B 1 HETATM 5 C C3 LBN . . . Y 4 168.103 -137.362 182.431 1 150.1 ? C3 LBN 1205 B 1 HETATM 6 C C6 LBN . . . Y 4 170.782 -137.071 174.544 1 150.1 ? C6 LBN 1205 B 1 HETATM 7 O O1 LBN . . . Y 4 169.212 -137.093 178.893 1 150.1 ? O1 LBN 1205 B 1 HETATM 8 C C9 LBN . . . Y 4 170.244 -136.381 175.846 1 150.1 ? C9 LBN 1205 B 1 HETATM 9 O O2 LBN . . . Y 4 169.05 -136.943 176.127 1 150.1 ? O2 LBN 1205 B 1 HETATM 10 C C12 LBN . . . Y 4 171.107 -136.602 172.09 1 150.1 ? C12 LBN 1205 B 1 HETATM 11 O O3 LBN . . . Y 4 168.428 -135.026 177.57 1 150.1 ? O3 LBN 1205 B 1 HETATM 12 C C15 LBN . . . Y 4 168.937 -137.485 172.848 1 150.1 ? C15 LBN 1205 B 1 HETATM 13 O O4 LBN . . . Y 4 167.018 -137.3 177.569 1 150.1 ? O4 LBN 1205 B 1 HETATM 14 C C18 LBN . . . Y 4 169.584 -135.15 173.331 1 150.1 ? C18 LBN 1205 B 1 HETATM 15 C C25 LBN . . . Y 4 167.285 -136.317 184.434 1 150.1 ? C25 LBN 1205 B 1 HETATM 16 O O5 LBN . . . Y 4 168.304 -136.511 183.551 1 150.1 ? O5 LBN 1205 B 1 HETATM 17 C C26 LBN . . . Y 4 167.45 -135.111 185.34 1 150.1 ? C26 LBN 1205 B 1 HETATM 18 O O6 LBN . . . Y 4 166.336 -137.076 184.469 1 150.1 ? O6 LBN 1205 B 1 HETATM 19 C C27 LBN . . . Y 4 167.95 -135.441 186.758 1 150.1 ? C27 LBN 1205 B 1 HETATM 20 C C28 LBN . . . Y 4 168.721 -134.295 187.467 1 150.1 ? C28 LBN 1205 B 1 HETATM 21 C C29 LBN . . . Y 4 168.657 -134.257 189.019 1 150.1 ? C29 LBN 1205 B 1 HETATM 22 C C30 LBN . . . Y 4 169.828 -133.524 189.727 1 150.1 ? C30 LBN 1205 B 1 HETATM 23 C C31 LBN . . . Y 4 169.559 -132.969 191.159 1 150.1 ? C31 LBN 1205 B 1 HETATM 24 C C32 LBN . . . Y 4 170.475 -133.471 192.299 1 150.1 ? C32 LBN 1205 B 1 HETATM 25 C C33 LBN . . . Y 4 170.312 -132.753 193.668 1 150.1 ? C33 LBN 1205 B 1 HETATM 26 C C34 LBN . . . Y 4 171.443 -136.477 181.383 1 150.1 ? C34 LBN 1205 B 1 HETATM 27 O O7 LBN . . . Y 4 170.358 -137.244 181.722 1 150.1 ? O7 LBN 1205 B 1 HETATM 28 C C35 LBN . . . Y 4 172.589 -136.561 182.383 1 150.1 ? C35 LBN 1205 B 1 HETATM 29 O O8 LBN . . . Y 4 171.419 -135.817 180.367 1 150.1 ? O8 LBN 1205 B 1 HETATM 30 C C36 LBN . . . Y 4 172.585 -135.488 183.504 1 150.1 ? C36 LBN 1205 B 1 HETATM 31 C C37 LBN . . . Y 4 172.412 -136.008 184.953 1 150.1 ? C37 LBN 1205 B 1 HETATM 32 C C38 LBN . . . Y 4 173.033 -135.139 186.073 1 150.1 ? C38 LBN 1205 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #