data_6PQO # _model_server_result.job_id mGC9sABE0f1pgXYkhZpL3Q _model_server_result.datetime_utc '2024-12-21 16:32:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pqo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1309}' # _entry.id 6PQO # _exptl.entry_id 6PQO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 717.996 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PQO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PQO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N ? 5 U N N ? 5 V N N ? 5 W N N ? 5 AA N N ? 5 BA N N ? 5 CA N N ? 5 DA N N ? 5 EA N N ? 5 IA N N ? 5 JA N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E NAG 1 E 1 NAG D 1301 NAG 2 n E NAG 2 E 2 NAG D 1302 NAG 2 n F NAG 1 F 1 NAG A 1301 NAG 2 n F NAG 2 F 2 NAG A 1302 NAG 2 n G NAG 1 G 1 NAG B 1301 NAG 2 n G NAG 2 G 2 NAG B 1302 NAG 2 n H NAG 1 H 1 NAG C 1301 NAG 2 n H NAG 2 H 2 NAG C 1302 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 622 D CYS 621 1_555 I C22 JT0 . D JT0 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale2 B SG CYS 622 A CYS 621 1_555 R C22 JT0 . A JT0 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? covale ? covale3 C SG CYS 622 B CYS 621 1_555 X C22 JT0 . B JT0 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale4 D SG CYS 622 C CYS 621 1_555 FA C22 JT0 . C JT0 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale5 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale8 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C39 H76 N O8 P' _chem_comp.formula_weight 717.996 _chem_comp.id 6OU _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C47 6OU sing 1 n n C48 C49 6OU sing 2 n n C47 C46 6OU sing 3 n n C41 C40 6OU doub 4 z n C41 C42 6OU sing 5 n n C40 C39 6OU sing 6 n n C27 C28 6OU sing 7 n n C27 O26 6OU sing 8 n n C28 N29 6OU sing 9 n n C01 C02 6OU sing 10 n n C42 C43 6OU sing 11 n n C02 C03 6OU sing 12 n n C45 C46 6OU sing 13 n n C45 C44 6OU sing 14 n n C39 C38 6OU sing 15 n n C33 C34 6OU sing 16 n n C33 C31 6OU sing 17 n n C44 C43 6OU sing 18 n n O26 P23 6OU sing 19 n n O24 P23 6OU doub 20 n n C35 C34 6OU sing 21 n n C35 C36 6OU sing 22 n n C38 C37 6OU sing 23 n n C36 C37 6OU sing 24 n n C31 O30 6OU sing 25 n n C31 O32 6OU doub 26 n n O22 P23 6OU sing 27 n n O22 C21 6OU sing 28 n n O30 C20 6OU sing 29 n n P23 O25 6OU sing 30 n n C03 C04 6OU sing 31 n n C04 C05 6OU sing 32 n n C19 C20 6OU sing 33 n n C19 O18 6OU sing 34 n n C21 C20 6OU sing 35 n n C15 C14 6OU sing 36 n n C15 C16 6OU sing 37 n n O18 C16 6OU sing 38 n n C14 C13 6OU sing 39 n n C05 C06 6OU sing 40 n n C16 O17 6OU doub 41 n n C06 C07 6OU sing 42 n n C11 C10 6OU sing 43 n n C11 C12 6OU sing 44 n n C13 C12 6OU sing 45 n n C10 C09 6OU sing 46 n n C07 C08 6OU sing 47 n n C09 C08 6OU sing 48 n n C01 H1 6OU sing 49 n n C01 H2 6OU sing 50 n n C01 H3 6OU sing 51 n n C02 H4 6OU sing 52 n n C02 H5 6OU sing 53 n n C03 H6 6OU sing 54 n n C03 H7 6OU sing 55 n n C04 H8 6OU sing 56 n n C04 H9 6OU sing 57 n n C05 H10 6OU sing 58 n n C05 H11 6OU sing 59 n n C06 H12 6OU sing 60 n n C06 H13 6OU sing 61 n n C07 H14 6OU sing 62 n n C07 H15 6OU sing 63 n n C08 H16 6OU sing 64 n n C08 H17 6OU sing 65 n n C09 H18 6OU sing 66 n n C09 H19 6OU sing 67 n n C10 H20 6OU sing 68 n n C10 H21 6OU sing 69 n n C11 H22 6OU sing 70 n n C11 H23 6OU sing 71 n n C12 H24 6OU sing 72 n n C12 H25 6OU sing 73 n n C13 H26 6OU sing 74 n n C13 H27 6OU sing 75 n n C14 H28 6OU sing 76 n n C14 H29 6OU sing 77 n n C15 H30 6OU sing 78 n n C15 H31 6OU sing 79 n n C19 H32 6OU sing 80 n n C19 H33 6OU sing 81 n n C20 H34 6OU sing 82 n n C21 H35 6OU sing 83 n n C21 H36 6OU sing 84 n n O25 H37 6OU sing 85 n n C27 H38 6OU sing 86 n n C27 H39 6OU sing 87 n n C28 H40 6OU sing 88 n n C28 H41 6OU sing 89 n n N29 H42 6OU sing 90 n n N29 H43 6OU sing 91 n n C33 H45 6OU sing 92 n n C33 H46 6OU sing 93 n n C34 H47 6OU sing 94 n n C34 H48 6OU sing 95 n n C35 H49 6OU sing 96 n n C35 H50 6OU sing 97 n n C36 H51 6OU sing 98 n n C36 H52 6OU sing 99 n n C37 H53 6OU sing 100 n n C37 H54 6OU sing 101 n n C38 H55 6OU sing 102 n n C38 H56 6OU sing 103 n n C39 H57 6OU sing 104 n n C39 H58 6OU sing 105 n n C40 H59 6OU sing 106 n n C41 H60 6OU sing 107 n n C42 H61 6OU sing 108 n n C42 H62 6OU sing 109 n n C43 H63 6OU sing 110 n n C43 H64 6OU sing 111 n n C44 H65 6OU sing 112 n n C44 H66 6OU sing 113 n n C45 H67 6OU sing 114 n n C45 H68 6OU sing 115 n n C46 H69 6OU sing 116 n n C46 H70 6OU sing 117 n n C47 H71 6OU sing 118 n n C47 H72 6OU sing 119 n n C48 H73 6OU sing 120 n n C48 H74 6OU sing 121 n n C49 H75 6OU sing 122 n n C49 H76 6OU sing 123 n n C49 H77 6OU sing 124 n n # _atom_sites.entry_id 6PQO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 JT0 D 1 1303 1303 JT0 JT0 . J 4 LBN D 1 1304 1304 LBN LBN . K 4 LBN D 1 1305 1305 LBN LBN . L 5 6OU D 1 1306 1306 6OU 6OU . M 5 6OU D 1 1307 1307 6OU 6OU . N 5 6OU D 1 1308 1306 6OU 6OU . O 5 6OU D 1 1309 1310 6OU 6OU . P 5 6OU D 1 1310 1308 6OU 6OU . Q 5 6OU A 1 1201 1308 6OU 6OU . R 3 JT0 A 1 1204 1303 JT0 JT0 . S 4 LBN A 1 1205 1304 LBN LBN . T 4 LBN A 1 1206 1305 LBN LBN . U 5 6OU A 1 1207 1307 6OU 6OU . V 5 6OU A 1 1208 1310 6OU 6OU . W 5 6OU B 1 1201 1308 6OU 6OU . X 3 JT0 B 1 1204 1303 JT0 JT0 . Y 4 LBN B 1 1205 1304 LBN LBN . Z 4 LBN B 1 1206 1305 LBN LBN . AA 5 6OU B 1 1207 1306 6OU 6OU . BA 5 6OU B 1 1208 1307 6OU 6OU . CA 5 6OU B 1 1209 1310 6OU 6OU . DA 5 6OU C 1 1201 1310 6OU 6OU . EA 5 6OU C 1 1202 1308 6OU 6OU . FA 3 JT0 C 1 1205 1303 JT0 JT0 . GA 4 LBN C 1 1206 1304 LBN LBN . HA 4 LBN C 1 1207 1305 LBN LBN . IA 5 6OU C 1 1208 1306 6OU 6OU . JA 5 6OU C 1 1209 1307 6OU 6OU . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 6OU . . . O 5 112.48 -132.455 189.612 1 162.67 ? C10 6OU 1309 D 1 HETATM 2 C C11 6OU . . . O 5 113.693 -132.457 188.616 1 162.67 ? C11 6OU 1309 D 1 HETATM 3 C C12 6OU . . . O 5 113.366 -132.262 187.096 1 162.67 ? C12 6OU 1309 D 1 HETATM 4 C C13 6OU . . . O 5 114.35 -131.382 186.255 1 162.67 ? C13 6OU 1309 D 1 HETATM 5 C C14 6OU . . . O 5 114.259 -131.549 184.693 1 162.67 ? C14 6OU 1309 D 1 HETATM 6 C C15 6OU . . . O 5 114.544 -130.264 183.827 1 162.67 ? C15 6OU 1309 D 1 HETATM 7 C C16 6OU . . . O 5 114.31 -130.498 182.307 1 162.67 ? C16 6OU 1309 D 1 HETATM 8 O O17 6OU . . . O 5 114.324 -131.583 181.799 1 162.67 ? O17 6OU 1309 D 1 HETATM 9 O O18 6OU . . . O 5 114.076 -129.369 181.509 1 162.67 ? O18 6OU 1309 D 1 HETATM 10 C C19 6OU . . . O 5 115.243 -128.622 181.079 1 162.67 ? C19 6OU 1309 D 1 HETATM 11 C C20 6OU . . . O 5 114.87 -127.094 180.825 1 162.67 ? C20 6OU 1309 D 1 HETATM 12 C C21 6OU . . . O 5 115.579 -126.56 179.502 1 162.67 ? C21 6OU 1309 D 1 HETATM 13 O O22 6OU . . . O 5 115.94 -127.661 178.721 1 162.67 ? O22 6OU 1309 D 1 HETATM 14 P P23 6OU . . . O 5 116.708 -127.491 177.173 1 162.67 ? P23 6OU 1309 D 1 HETATM 15 O O24 6OU . . . O 5 117.613 -126.286 177.325 1 162.67 ? O24 6OU 1309 D 1 HETATM 16 O O25 6OU . . . O 5 115.655 -127.569 176.121 1 162.67 ? O25 6OU 1309 D 1 HETATM 17 O O26 6OU . . . O 5 117.74 -128.858 176.995 1 162.67 ? O26 6OU 1309 D 1 HETATM 18 O O30 6OU . . . O 5 115.415 -126.401 182.006 1 162.67 ? O30 6OU 1309 D 1 HETATM 19 C C31 6OU . . . O 5 114.52 -126.15 183.073 1 162.67 ? C31 6OU 1309 D 1 HETATM 20 O O32 6OU . . . O 5 113.364 -126.301 182.931 1 162.67 ? O32 6OU 1309 D 1 HETATM 21 C C33 6OU . . . O 5 115.144 -125.666 184.434 1 162.67 ? C33 6OU 1309 D 1 HETATM 22 C C34 6OU . . . O 5 114.179 -124.764 185.303 1 162.67 ? C34 6OU 1309 D 1 HETATM 23 C C35 6OU . . . O 5 114.183 -124.995 186.858 1 162.67 ? C35 6OU 1309 D 1 HETATM 24 C C36 6OU . . . O 5 114.3 -126.468 187.373 1 162.67 ? C36 6OU 1309 D 1 HETATM 25 C C37 6OU . . . O 5 115.185 -126.713 188.644 1 162.67 ? C37 6OU 1309 D 1 HETATM 26 C C38 6OU . . . O 5 114.446 -127.046 189.975 1 162.67 ? C38 6OU 1309 D 1 HETATM 27 C C39 6OU . . . O 5 115.275 -127.746 191.105 1 162.67 ? C39 6OU 1309 D 1 HETATM 28 C C40 6OU . . . O 5 115.463 -126.988 192.411 1 162.67 ? C40 6OU 1309 D 1 HETATM 29 C C41 6OU . . . O 5 115.694 -127.512 193.628 1 162.67 ? C41 6OU 1309 D 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #