data_6PQP # _model_server_result.job_id bbKDEiBkotoHfPSsCEfKBQ _model_server_result.datetime_utc '2024-11-21 14:29:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pqp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EA","auth_seq_id":1203}' # _entry.id 6PQP # _exptl.entry_id 6PQP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 151.229 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description N-benzylthioformamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PQP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PQP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 P N N ? 3 W N N ? 3 EA N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E NAG 1 E 1 NAG A 1401 NAG 2 n E NAG 2 E 2 NAG A 1402 NAG 2 n F NAG 1 F 1 NAG D 1401 NAG 2 n F NAG 2 F 2 NAG D 1402 NAG 2 n G NAG 1 G 1 NAG B 1401 NAG 2 n G NAG 2 G 2 NAG B 1402 NAG 2 n H NAG 1 H 1 NAG C 1401 NAG 2 n H NAG 2 H 2 NAG C 1402 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 622 A CYS 621 1_555 I C02 9BE . A 9BE 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.787 ? covale ? covale2 B SG CYS 622 D CYS 621 1_555 P C02 9BE . D 9BE 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? covale ? covale3 C SG CYS 622 B CYS 621 1_555 W C02 9BE . B 9BE 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.787 ? covale ? covale4 D SG CYS 622 C CYS 621 1_555 EA C02 9BE . C 9BE 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? covale ? covale5 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale7 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale8 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C8 H9 N S' _chem_comp.formula_weight 151.229 _chem_comp.id 9BE _chem_comp.mon_nstd_flag . _chem_comp.name N-benzylthioformamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S01 C02 9BE doub 125 n n C07 C06 9BE doub 126 n y C07 C08 9BE sing 127 n y C02 N03 9BE sing 128 n n C06 C05 9BE sing 129 n y C08 C09 9BE doub 130 n y C05 C04 9BE sing 131 n n C05 C10 9BE doub 132 n y N03 C04 9BE sing 133 n n C09 C10 9BE sing 134 n y C02 H2 9BE sing 135 n n C04 H3 9BE sing 136 n n C04 H4 9BE sing 137 n n C06 H5 9BE sing 138 n n C07 H6 9BE sing 139 n n C08 H7 9BE sing 140 n n C09 H8 9BE sing 141 n n C10 H9 9BE sing 142 n n N03 H1 9BE sing 143 n n # _atom_sites.entry_id 6PQP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 9BE A 1 1201 1303 9BE 9BE . J 4 6OU A 1 1202 1304 6OU 6OU . K 4 6OU A 1 1203 1306 6OU 6OU . L 4 6OU A 1 1204 1307 6OU 6OU . M 4 6OU A 1 1205 1308 6OU 6OU . N 5 LBN A 1 1206 1310 LBN LBN . O 4 6OU A 1 1209 1305 6OU 6OU . P 3 9BE D 1 1201 1303 9BE 9BE . Q 4 6OU D 1 1202 1304 6OU 6OU . R 4 6OU D 1 1203 1306 6OU 6OU . S 4 6OU D 1 1204 1307 6OU 6OU . T 5 LBN D 1 1205 1310 LBN LBN . U 4 6OU D 1 1208 1305 6OU 6OU . V 4 6OU B 1 1201 1305 6OU 6OU . W 3 9BE B 1 1202 1303 9BE 9BE . X 4 6OU B 1 1203 1304 6OU 6OU . Y 4 6OU B 1 1204 1306 6OU 6OU . Z 4 6OU B 1 1205 1307 6OU 6OU . AA 4 6OU B 1 1206 1308 6OU 6OU . BA 5 LBN B 1 1207 1310 LBN LBN . CA 4 6OU C 1 1201 1308 6OU 6OU . DA 4 6OU C 1 1202 1305 6OU 6OU . EA 3 9BE C 1 1203 1303 9BE 9BE . FA 4 6OU C 1 1204 1304 6OU 6OU . GA 4 6OU C 1 1205 1306 6OU 6OU . HA 4 6OU C 1 1206 1307 6OU 6OU . IA 4 6OU C 1 1207 1308 6OU 6OU . JA 5 LBN C 1 1208 1310 LBN LBN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S01 9BE . . . EA 3 152.811 -169.308 147.102 1 104.34 ? S01 9BE 1203 C 1 HETATM 2 C C02 9BE . . . EA 3 152.597 -168.276 148.258 1 104.34 ? C02 9BE 1203 C 1 HETATM 3 N N03 9BE . . . EA 3 151.448 -168.22 149.048 1 104.34 ? N03 9BE 1203 C 1 HETATM 4 C C04 9BE . . . EA 3 151.378 -169.057 150.238 1 104.34 ? C04 9BE 1203 C 1 HETATM 5 C C05 9BE . . . EA 3 150.427 -170.219 150.091 1 104.34 ? C05 9BE 1203 C 1 HETATM 6 C C06 9BE . . . EA 3 149.504 -170.523 151.082 1 104.34 ? C06 9BE 1203 C 1 HETATM 7 C C07 9BE . . . EA 3 148.647 -171.604 150.922 1 104.34 ? C07 9BE 1203 C 1 HETATM 8 C C08 9BE . . . EA 3 148.685 -172.389 149.781 1 104.34 ? C08 9BE 1203 C 1 HETATM 9 C C09 9BE . . . EA 3 149.599 -172.089 148.792 1 104.34 ? C09 9BE 1203 C 1 HETATM 10 C C10 9BE . . . EA 3 150.459 -171.017 148.948 1 104.34 ? C10 9BE 1203 C 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 10 #