data_6PR9 # _model_server_result.job_id P555O4vuSpKKdQSD-cFWNw _model_server_result.datetime_utc '2025-02-23 04:27:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pr9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 6PR9 # _exptl.entry_id 6PR9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 516.635 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2E)-3-{5-[(2,4-diaminopyrimidin-5-yl)methyl]-2,3-dimethoxyphenyl}-1-[(1S)-1-(pentan-3-yl)-3,4-dihydrophthalazin-2(1H)-yl]prop-2-en-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6PR9 _cell.length_a 78.98 _cell.length_b 78.98 _cell.length_c 107.33 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PR9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H36 N6 O3' _chem_comp.formula_weight 516.635 _chem_comp.id OWV _chem_comp.mon_nstd_flag . _chem_comp.name (2E)-3-{5-[(2,4-diaminopyrimidin-5-yl)methyl]-2,3-dimethoxyphenyl}-1-[(1S)-1-(pentan-3-yl)-3,4-dihydrophthalazin-2(1H)-yl]prop-2-en-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 O22 OWV sing 317 n n C26 O25 OWV sing 318 n n O25 C24 OWV sing 319 n n O22 C21 OWV sing 320 n n C24 C21 OWV doub 321 n y C24 C27 OWV sing 322 n y C21 C20 OWV sing 323 n y C27 C28 OWV doub 324 n y C15 C14 OWV sing 325 n n C20 C19 OWV sing 326 n n C20 C38 OWV doub 327 n y C19 C18 OWV doub 328 e n C28 C38 OWV sing 329 n y C28 C29 OWV sing 330 n n O01 C02 OWV doub 331 n n C14 C13 OWV sing 332 n n C31 N32 OWV doub 333 n y C31 C30 OWV sing 334 n y N32 C33 OWV sing 335 n y C18 C02 OWV sing 336 n n C02 N03 OWV sing 337 n n C29 C30 OWV sing 338 n n C30 C36 OWV doub 339 n y C33 N34 OWV sing 340 n n C33 N35 OWV doub 341 n y C13 C12 OWV sing 342 n n C13 C16 OWV sing 343 n n N03 C12 OWV sing 344 n n N03 N04 OWV sing 345 n n C36 N35 OWV sing 346 n y C36 N37 OWV sing 347 n n C12 C11 OWV sing 348 n n C17 C16 OWV sing 349 n n N04 C05 OWV sing 350 n n C11 C10 OWV doub 351 n y C11 C06 OWV sing 352 n y C10 C09 OWV sing 353 n y C05 C06 OWV sing 354 n n C06 C07 OWV doub 355 n y C09 C08 OWV doub 356 n y C07 C08 OWV sing 357 n y C10 H1 OWV sing 358 n n C15 H2 OWV sing 359 n n C15 H3 OWV sing 360 n n C15 H4 OWV sing 361 n n C16 H5 OWV sing 362 n n C16 H6 OWV sing 363 n n C17 H7 OWV sing 364 n n C17 H8 OWV sing 365 n n C17 H9 OWV sing 366 n n C19 H10 OWV sing 367 n n C23 H11 OWV sing 368 n n C23 H12 OWV sing 369 n n C23 H13 OWV sing 370 n n C18 H14 OWV sing 371 n n C26 H15 OWV sing 372 n n C26 H16 OWV sing 373 n n C26 H17 OWV sing 374 n n C05 H18 OWV sing 375 n n C05 H19 OWV sing 376 n n C07 H20 OWV sing 377 n n C08 H21 OWV sing 378 n n C09 H22 OWV sing 379 n n C12 H23 OWV sing 380 n n C13 H24 OWV sing 381 n n C14 H25 OWV sing 382 n n C14 H26 OWV sing 383 n n C27 H27 OWV sing 384 n n C29 H28 OWV sing 385 n n C29 H29 OWV sing 386 n n C31 H30 OWV sing 387 n n C38 H31 OWV sing 388 n n N04 H32 OWV sing 389 n n N34 H33 OWV sing 390 n n N34 H34 OWV sing 391 n n N37 H35 OWV sing 392 n n N37 H36 OWV sing 393 n n # _atom_sites.entry_id 6PR9 _atom_sites.fract_transf_matrix[1][1] 0.012661 _atom_sites.fract_transf_matrix[1][2] 0.00731 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01462 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009317 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 201 NAP NAP . C 3 OWV A 1 202 301 OWV 69S . D 4 GOL A 1 203 401 GOL GOL . E 4 GOL A 1 204 501 GOL GOL . F 5 HOH A 1 301 29 HOH HOH . F 5 HOH A 2 302 169 HOH HOH . F 5 HOH A 3 303 33 HOH HOH . F 5 HOH A 4 304 94 HOH HOH . F 5 HOH A 5 305 51 HOH HOH . F 5 HOH A 6 306 40 HOH HOH . F 5 HOH A 7 307 43 HOH HOH . F 5 HOH A 8 308 31 HOH HOH . F 5 HOH A 9 309 165 HOH HOH . F 5 HOH A 10 310 152 HOH HOH . F 5 HOH A 11 311 7 HOH HOH . F 5 HOH A 12 312 42 HOH HOH . F 5 HOH A 13 313 59 HOH HOH . F 5 HOH A 14 314 3 HOH HOH . F 5 HOH A 15 315 50 HOH HOH . F 5 HOH A 16 316 37 HOH HOH . F 5 HOH A 17 317 119 HOH HOH . F 5 HOH A 18 318 133 HOH HOH . F 5 HOH A 19 319 68 HOH HOH . F 5 HOH A 20 320 118 HOH HOH . F 5 HOH A 21 321 88 HOH HOH . F 5 HOH A 22 322 57 HOH HOH . F 5 HOH A 23 323 79 HOH HOH . F 5 HOH A 24 324 23 HOH HOH . F 5 HOH A 25 325 92 HOH HOH . F 5 HOH A 26 326 81 HOH HOH . F 5 HOH A 27 327 13 HOH HOH . F 5 HOH A 28 328 90 HOH HOH . F 5 HOH A 29 329 70 HOH HOH . F 5 HOH A 30 330 35 HOH HOH . F 5 HOH A 31 331 101 HOH HOH . F 5 HOH A 32 332 14 HOH HOH . F 5 HOH A 33 333 100 HOH HOH . F 5 HOH A 34 334 48 HOH HOH . F 5 HOH A 35 335 8 HOH HOH . F 5 HOH A 36 336 47 HOH HOH . F 5 HOH A 37 337 65 HOH HOH . F 5 HOH A 38 338 128 HOH HOH . F 5 HOH A 39 339 45 HOH HOH . F 5 HOH A 40 340 124 HOH HOH . F 5 HOH A 41 341 25 HOH HOH . F 5 HOH A 42 342 49 HOH HOH . F 5 HOH A 43 343 156 HOH HOH . F 5 HOH A 44 344 159 HOH HOH . F 5 HOH A 45 345 110 HOH HOH . F 5 HOH A 46 346 115 HOH HOH . F 5 HOH A 47 347 132 HOH HOH . F 5 HOH A 48 348 162 HOH HOH . F 5 HOH A 49 349 2 HOH HOH . F 5 HOH A 50 350 1 HOH HOH . F 5 HOH A 51 351 80 HOH HOH . F 5 HOH A 52 352 72 HOH HOH . F 5 HOH A 53 353 27 HOH HOH . F 5 HOH A 54 354 38 HOH HOH . F 5 HOH A 55 355 63 HOH HOH . F 5 HOH A 56 356 136 HOH HOH . F 5 HOH A 57 357 55 HOH HOH . F 5 HOH A 58 358 177 HOH HOH . F 5 HOH A 59 359 82 HOH HOH . F 5 HOH A 60 360 87 HOH HOH . F 5 HOH A 61 361 36 HOH HOH . F 5 HOH A 62 362 24 HOH HOH . F 5 HOH A 63 363 69 HOH HOH . F 5 HOH A 64 364 20 HOH HOH . F 5 HOH A 65 365 4 HOH HOH . F 5 HOH A 66 366 12 HOH HOH . F 5 HOH A 67 367 178 HOH HOH . F 5 HOH A 68 368 6 HOH HOH . F 5 HOH A 69 369 137 HOH HOH . F 5 HOH A 70 370 16 HOH HOH . F 5 HOH A 71 371 9 HOH HOH . F 5 HOH A 72 372 116 HOH HOH . F 5 HOH A 73 373 105 HOH HOH . F 5 HOH A 74 374 46 HOH HOH . F 5 HOH A 75 375 154 HOH HOH . F 5 HOH A 76 376 76 HOH HOH . F 5 HOH A 77 377 62 HOH HOH . F 5 HOH A 78 378 104 HOH HOH . F 5 HOH A 79 379 161 HOH HOH . F 5 HOH A 80 380 53 HOH HOH . F 5 HOH A 81 381 144 HOH HOH . F 5 HOH A 82 382 130 HOH HOH . F 5 HOH A 83 383 61 HOH HOH . F 5 HOH A 84 384 73 HOH HOH . F 5 HOH A 85 385 21 HOH HOH . F 5 HOH A 86 386 75 HOH HOH . F 5 HOH A 87 387 112 HOH HOH . F 5 HOH A 88 388 11 HOH HOH . F 5 HOH A 89 389 34 HOH HOH . F 5 HOH A 90 390 10 HOH HOH . F 5 HOH A 91 391 41 HOH HOH . F 5 HOH A 92 392 107 HOH HOH . F 5 HOH A 93 393 145 HOH HOH . F 5 HOH A 94 394 5 HOH HOH . F 5 HOH A 95 395 22 HOH HOH . F 5 HOH A 96 396 99 HOH HOH . F 5 HOH A 97 397 91 HOH HOH . F 5 HOH A 98 398 96 HOH HOH . F 5 HOH A 99 399 83 HOH HOH . F 5 HOH A 100 400 168 HOH HOH . F 5 HOH A 101 401 60 HOH HOH . F 5 HOH A 102 402 95 HOH HOH . F 5 HOH A 103 403 148 HOH HOH . F 5 HOH A 104 404 39 HOH HOH . F 5 HOH A 105 405 127 HOH HOH . F 5 HOH A 106 406 172 HOH HOH . F 5 HOH A 107 407 26 HOH HOH . F 5 HOH A 108 408 18 HOH HOH . F 5 HOH A 109 409 108 HOH HOH . F 5 HOH A 110 410 106 HOH HOH . F 5 HOH A 111 411 140 HOH HOH . F 5 HOH A 112 412 170 HOH HOH . F 5 HOH A 113 413 167 HOH HOH . F 5 HOH A 114 414 151 HOH HOH . F 5 HOH A 115 415 175 HOH HOH . F 5 HOH A 116 416 149 HOH HOH . F 5 HOH A 117 417 67 HOH HOH . F 5 HOH A 118 418 121 HOH HOH . F 5 HOH A 119 419 120 HOH HOH . F 5 HOH A 120 420 125 HOH HOH . F 5 HOH A 121 421 166 HOH HOH . F 5 HOH A 122 422 171 HOH HOH . F 5 HOH A 123 423 15 HOH HOH . F 5 HOH A 124 424 117 HOH HOH . F 5 HOH A 125 425 157 HOH HOH . F 5 HOH A 126 426 102 HOH HOH . F 5 HOH A 127 427 32 HOH HOH . F 5 HOH A 128 428 71 HOH HOH . F 5 HOH A 129 429 98 HOH HOH . F 5 HOH A 130 430 74 HOH HOH . F 5 HOH A 131 431 85 HOH HOH . F 5 HOH A 132 432 66 HOH HOH . F 5 HOH A 133 433 143 HOH HOH . F 5 HOH A 134 434 52 HOH HOH . F 5 HOH A 135 435 142 HOH HOH . F 5 HOH A 136 436 155 HOH HOH . F 5 HOH A 137 437 111 HOH HOH . F 5 HOH A 138 438 78 HOH HOH . F 5 HOH A 139 439 86 HOH HOH . F 5 HOH A 140 440 134 HOH HOH . F 5 HOH A 141 441 64 HOH HOH . F 5 HOH A 142 442 19 HOH HOH . F 5 HOH A 143 443 158 HOH HOH . F 5 HOH A 144 444 126 HOH HOH . F 5 HOH A 145 445 141 HOH HOH . F 5 HOH A 146 446 173 HOH HOH . F 5 HOH A 147 447 28 HOH HOH . F 5 HOH A 148 448 97 HOH HOH . F 5 HOH A 149 449 123 HOH HOH . F 5 HOH A 150 450 109 HOH HOH . F 5 HOH A 151 451 135 HOH HOH . F 5 HOH A 152 452 77 HOH HOH . F 5 HOH A 153 453 131 HOH HOH . F 5 HOH A 154 454 138 HOH HOH . F 5 HOH A 155 455 103 HOH HOH . F 5 HOH A 156 456 164 HOH HOH . F 5 HOH A 157 457 122 HOH HOH . F 5 HOH A 158 458 147 HOH HOH . F 5 HOH A 159 459 150 HOH HOH . F 5 HOH A 160 460 146 HOH HOH . F 5 HOH A 161 461 153 HOH HOH . F 5 HOH A 162 462 84 HOH HOH . F 5 HOH A 163 463 176 HOH HOH . F 5 HOH A 164 464 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C20 OWV . . . C 3 -5.616 33.922 -6.259 1 21.72 ? C20 OWV 202 A 1 HETATM 2 C C21 OWV . . . C 3 -4.842 34.241 -7.44 1 21.54 ? C21 OWV 202 A 1 HETATM 3 C C24 OWV . . . C 3 -3.683 33.493 -7.767 1 20.43 ? C24 OWV 202 A 1 HETATM 4 C C10 OWV . A . C 3 -11.442 38.587 -2.107 0.87 52.45 ? C10 OWV 202 A 1 HETATM 5 C C11 OWV . A . C 3 -10.693 37.361 -2.408 0.87 46.45 ? C11 OWV 202 A 1 HETATM 6 C C15 OWV . . . C 3 -11.496 37.798 -6.317 1 43.42 ? C15 OWV 202 A 1 HETATM 7 C C16 OWV . . . C 3 -12.814 35.77 -3.286 1 41.94 ? C16 OWV 202 A 1 HETATM 8 C C17 OWV . . . C 3 -14.09 36.585 -3.462 1 46.03 ? C17 OWV 202 A 1 HETATM 9 C C19 OWV . . . C 3 -6.862 34.688 -5.929 1 27.73 ? C19 OWV 202 A 1 HETATM 10 C C23 OWV . . . C 3 -6.262 34.944 -9.244 1 18.12 ? C23 OWV 202 A 1 HETATM 11 C C18 OWV . A . C 3 -6.899 35.774 -5.077 0.87 32.4 ? C18 OWV 202 A 1 HETATM 12 C C26 OWV . . . C 3 -1.74 33.165 -9.104 1 19.53 ? C26 OWV 202 A 1 HETATM 13 C C02 OWV . A . C 3 -8.238 36.547 -4.95 0.87 32.7 ? C02 OWV 202 A 1 HETATM 14 C C05 OWV . A . C 3 -9.335 35.331 -1.653 0.87 30.24 ? C05 OWV 202 A 1 HETATM 15 C C06 OWV . A . C 3 -10.139 36.608 -1.373 0.87 48.21 ? C06 OWV 202 A 1 HETATM 16 C C07 OWV . A . C 3 -10.325 37.037 -0.002 0.87 40.92 ? C07 OWV 202 A 1 HETATM 17 C C08 OWV . A . C 3 -11.057 38.221 0.296 0.87 41.4 ? C08 OWV 202 A 1 HETATM 18 C C09 OWV . A . C 3 -11.622 38.995 -0.762 0.87 40.91 ? C09 OWV 202 A 1 HETATM 19 C C12 OWV . A . C 3 -10.479 36.904 -3.85 0.87 44.52 ? C12 OWV 202 A 1 HETATM 20 C C13 OWV . A . C 3 -11.702 36.08 -4.392 0.87 46.43 ? C13 OWV 202 A 1 HETATM 21 C C14 OWV . . . C 3 -12.313 36.695 -5.663 1 41.31 ? C14 OWV 202 A 1 HETATM 22 C C27 OWV . . . C 3 -3.276 32.431 -6.934 1 17.16 ? C27 OWV 202 A 1 HETATM 23 C C28 OWV . . . C 3 -4.055 32.102 -5.762 1 21.96 ? C28 OWV 202 A 1 HETATM 24 C C29 OWV . . . C 3 -3.597 30.93 -4.841 1 20.53 ? C29 OWV 202 A 1 HETATM 25 C C30 OWV . . . C 3 -4.597 29.771 -4.824 1 16.52 ? C30 OWV 202 A 1 HETATM 26 C C31 OWV . . . C 3 -5.729 29.721 -5.642 1 16.59 ? C31 OWV 202 A 1 HETATM 27 C C33 OWV . . . C 3 -6.316 27.678 -4.678 1 17.56 ? C33 OWV 202 A 1 HETATM 28 C C36 OWV . . . C 3 -4.392 28.698 -3.937 1 14.99 ? C36 OWV 202 A 1 HETATM 29 C C38 OWV . . . C 3 -5.222 32.87 -5.437 1 18.93 ? C38 OWV 202 A 1 HETATM 30 N N03 OWV . A . C 3 -9.28 36.151 -3.939 0.87 36.68 ? N03 OWV 202 A 1 HETATM 31 N N04 OWV . A . C 3 -9.082 35.066 -3.06 0.87 33.61 ? N04 OWV 202 A 1 HETATM 32 N N32 OWV . . . C 3 -6.543 28.659 -5.528 1 19.96 ? N32 OWV 202 A 1 HETATM 33 N N34 OWV . . . C 3 -7.239 26.578 -4.601 1 17.52 ? N34 OWV 202 A 1 HETATM 34 N N35 OWV . . . C 3 -5.266 27.684 -3.891 1 15.86 ? N35 OWV 202 A 1 HETATM 35 N N37 OWV . . . C 3 -3.275 28.692 -3.117 1 14.78 ? N37 OWV 202 A 1 HETATM 36 O O01 OWV . A . C 3 -8.423 37.506 -5.71 0.87 35.11 ? O01 OWV 202 A 1 HETATM 37 O O22 OWV . . . C 3 -5.23 35.306 -8.317 1 24.05 ? O22 OWV 202 A 1 HETATM 38 O O25 OWV . . . C 3 -2.97 33.845 -8.927 1 19.64 ? O25 OWV 202 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 38 #